S4 generic functions needed by many Bioconductor packages.
| biocViews |
Infrastructure, Software |
| Version |
0.16.1 |
| In Bioconductor since |
BioC 2.10 (R-2.15) (4 years) |
| License |
Artistic-2.0 |
| Depends |
methods, utils, graphics, stats, parallel |
| Imports |
methods, utils, graphics, stats, parallel |
| LinkingTo |
|
| Suggests |
Biobase, S4Vectors, IRanges, GenomicRanges, AnnotationDbi, oligoClasses, oligo, affyPLM, flowClust, affy, DESeq2, MSnbase, annotate, RUnit |
| SystemRequirements |
|
| Enhances |
|
| URL |
|
| Depends On Me |
ACME, affy, affyPLM, altcdfenvs, AnnotationDbi, AnnotationForge, AnnotationHub, beadarray, bioassayR, Biobase, Biostrings, BSgenome, bsseq, Cardinal, Category, categoryCompare, chipseq, ChIPseqR, ChromHeatMap, cleanUpdTSeq, cn.mops, codelink, copynumber, CopyNumber450k, CRISPRseek, cummeRbund, DESeq, dexus, ensembldb, ensemblVEP, FEM, flowQ, FlowSOM, geneplotter, GenomeInfoDb, genomeIntervals, GenomicAlignments, GenomicFeatures, GenomicFiles, GenomicRanges, GenomicTuples, Genominator, genoset, ggbio, girafe, graphite, GSEABase, GUIDEseq, htSeqTools, interactiveDisplay, interactiveDisplayBase, IRanges, MBASED, MeSHDbi, meshr, methyAnalysis, MineICA, minfi, MLInterfaces, MotifDb, MotIV, MSnbase, multtest, oligo, OrganismDbi, Pbase, PICS, plethy, ProtGenerics, PSICQUIC, PWMEnrich, RareVariantVis, REDseq, Repitools, rMAT, RNAprobR, RnBeads, rsbml, S4Vectors, scsR, shinyMethyl, ShortRead, simpleaffy, simulatorZ, soGGi, TEQC, tigre, topGO, UNDO, UniProt.ws, VanillaICE, VariantAnnotation, VariantFiltering, xcms, XVector |
| Imports Me |
affyPLM, AllelicImbalance, annmap, annotate, AnnotationDbi, AnnotationForge, AnnotationHubData, ArrayExpressHTS, bamsignals, biocGraph, Biostrings, biosvd, biovizBase, BiSeq, blima, BrowserViz, BrowserVizDemo, BSgenome, BubbleTree, bumphunter, casper, Category, cgdv17, cghMCR, ChemmineDrugs, ChemmineOB, ChemmineR, ChIPComp, chipenrich.data, ChIPpeakAnno, ChIPQC, ChIPseeker, chipseq, CNPBayes, cobindR, compEpiTools, CoverageView, crlmm, cummeRbund, curatedCRCData, curatedOvarianData, ddCt, DESeq2, destiny, DEXSeq, diffHic, DOQTL, DrugVsDisease, easyRNASeq, EBImage, EDASeq, eiR, eisa, ELMER, epigenomix, erma, fastseg, ffpe, flowBin, flowClust, flowCore, flowFP, flowQ, flowStats, flowWorkspace, fmcsR, frma, gCMAPWeb, GenomeInfoDb, GenomicAlignments, GenomicInteractions, genotypeeval, GGBase, GGtools, goseq, GOTHiC, gQTLBase, gQTLstats, graph, GSVA, Gviz, gwascat, hiReadsProcessor, hopach, HTSeqGenie, INSPEcT, intansv, IONiseR, IVAS, KCsmart, KEGGandMetacoreDzPathwaysGEO, KEGGdzPathwaysGEO, LVSmiRNA, MEAL, metaMS, MethylAid, methylPipe, methylumi, MinimumDistance, MiRaGE, mogsa, monocle, motifbreakR, msa, mzR, NarrowPeaks, npGSEA, nucleR, oligoClasses, parglms, pcaMethods, pdInfoBuilder, phyloseq, piano, PING, plrs, podkat, prada, ProCoNA, pRoloc, pwOmics, QuasR, R453Plus1Toolbox, RCyjs, RCytoscape, REDseq, RefNet, ReportingTools, RGalaxy, RGSEA, RiboProfiling, Ringo, rMAT, Rqc, rqubic, Rsamtools, rsbml, rtracklayer, S4Vectors, SGSeq, simpleaffy, SLGI, SNPhood, SNPlocs.Hsapiens.dbSNP144.GRCh37, SNPlocs.Hsapiens.dbSNP144.GRCh38, snpStats, spliceSites, SplicingGraphs, Streamer, SummarizedExperiment, systemPipeR, systemPipeRdata, TarSeqQC, TCGAbiolinks, TFBSTools, triform, TSSi, unifiedWMWqPCR, VariantTools, XDE, XtraSNPlocs.Hsapiens.dbSNP144.GRCh37, XtraSNPlocs.Hsapiens.dbSNP144.GRCh38, XVector |
| Suggests Me |
acde, AIMS, ArrayTV, ASSET, baySeq, bigmemoryExtras, BiocCheck, BiocInstaller, BiocParallel, BiocStyle, biocViews, BiRewire, CAFE, CAMERA, CAnD, CausalR, ccrepe, CellNOptR, CexoR, ChIPXpress, clipper, clonotypeR, CNEr, CNORfeeder, CNORfuzzy, CNVPanelizer, coMET, ConnectivityMap, cosmiq, COSNet, cpvSNP, cytofkit, dagLogo, DAPAR, DBChIP, DEGreport, DMRcaller, DMRcate, ENCODExplorer, ENmix, FGNet, flowCL, FlowRepositoryR, focalCall, gCMAP, gdsfmt, GENE.E, GeneNetworkBuilder, GeneOverlap, geneRxCluster, GENESIS, geNetClassifier, genomation, GEOquery, GOstats, GraphPAC, GreyListChIP, grndata, GWASTools, h5vc, hiAnnotator, hierGWAS, hypergraph, iClusterPlus, illuminaio, InPAS, INPower, inSilicoMerging, kebabs, KEGGREST, ldblock, LOLA, M3D, mAPKL, massiR, MatrixRider, mdgsa, MeSH.Aca.eg.db, MeSH.Aga.PEST.eg.db, MeSH.Ame.eg.db, MeSH.Aml.eg.db, MeSH.Ana.eg.db, MeSH.Ani.FGSC.eg.db, MeSH.AOR.db, MeSH.Ath.eg.db, MeSH.Bfl.eg.db, MeSH.Bsu.168.eg.db, MeSH.Bsu.TUB10.eg.db, MeSH.Bta.eg.db, MeSH.Cal.SC5314.eg.db, MeSH.Cbr.eg.db, MeSH.Cel.eg.db, MeSH.Cfa.eg.db, MeSH.Cin.eg.db, MeSH.Cja.eg.db, MeSH.Cpo.eg.db, MeSH.Cre.eg.db, MeSH.Dan.eg.db, MeSH.db, MeSH.Dda.3937.eg.db, MeSH.Ddi.AX4.eg.db, MeSH.Der.eg.db, MeSH.Dgr.eg.db, MeSH.Dme.eg.db, MeSH.Dmo.eg.db, MeSH.Dpe.eg.db, MeSH.Dre.eg.db, MeSH.Dse.eg.db, MeSH.Dsi.eg.db, MeSH.Dvi.eg.db, MeSH.Dya.eg.db, MeSH.Eco.55989.eg.db, MeSH.Eco.CFT073.eg.db, MeSH.Eco.ED1a.eg.db, MeSH.Eco.HS.eg.db, MeSH.Eco.IAI1.eg.db, MeSH.Eco.IAI39.eg.db, MeSH.Eco.K12.DH10B.eg.db, MeSH.Eco.K12.MG1655.eg.db, MeSH.Eco.O127.H6.E2348.69.eg.db, MeSH.Eco.O157.H7.EDL933.eg.db, MeSH.Eco.O157.H7.Sakai.eg.db, MeSH.Eco.S88.eg.db, MeSH.Eco.UMN026.eg.db, MeSH.Eqc.eg.db, MeSH.Gga.eg.db, MeSH.Gma.eg.db, MeSH.Hsa.eg.db, MeSH.Laf.eg.db, MeSH.Lma.eg.db, MeSH.Mdo.eg.db, MeSH.Mes.eg.db, MeSH.Mga.eg.db, MeSH.Miy.eg.db, MeSH.Mml.eg.db, MeSH.Mmu.eg.db, MeSH.Mtr.eg.db, MeSH.Nle.eg.db, MeSH.Oan.eg.db, MeSH.Ocu.eg.db, MeSH.Oni.eg.db, MeSH.Osa.eg.db, MeSH.Pab.eg.db, MeSH.Pae.PAO1.eg.db, MeSH.PCR.db, MeSH.Pfa.3D7.eg.db, MeSH.Pto.eg.db, MeSH.Ptr.eg.db, MeSH.Rno.eg.db, MeSH.Sau.USA300TCH1516.eg.db, MeSH.Sce.S288c.eg.db, MeSH.Sco.A32.eg.db, MeSH.Sil.eg.db, MeSH.Spo.972h.eg.db, MeSH.Spu.eg.db, MeSH.Ssc.eg.db, MeSH.Syn.eg.db, MeSH.Tbr.9274.eg.db, MeSH.Tgo.ME49.eg.db, MeSH.Tgu.eg.db, MeSH.Vvi.eg.db, MeSH.Xla.eg.db, MeSH.Xtr.eg.db, MeSH.Zma.eg.db, Metab, metagene, metagenomeSeq, metaseqR, metaX, miRcomp, mirIntegrator, miRLAB, Mirsynergy, motifStack, MSnID, MultiMed, netbenchmark, netbiov, NetSAM, nondetects, PAA, Path2PPI, PathNet, pathview, pepXMLTab, PGA, PhenStat, Prize, proBAMr, pRolocGUI, proteoQC, qpgraph, quantro, QuartPAC, RBGL, rBiopaxParser, Rcade, rcellminer, rCGH, Rcpi, RCy3, Rgraphviz, rgsepd, riboSeqR, roar, ROntoTools, ropls, RTN, rTRM, sangerseqR, SANTA, sapFinder, segmentSeq, SeqArray, seqPattern, seqTools, SeqVarTools, SICtools, sigsquared, SIMAT, similaRpeak, SNPRelate, SpacePAC, specL, STATegRa, STRINGdb, TCC, TIN, ToPASeq, trackViewer, traseR, TRONCO |
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