To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("trackViewer")

In most cases, you don't need to download the package archive at all.

trackViewer

A bioconductor package with minimalist design for plotting elegant track layers

Bioconductor version: 3.2

visualize mapped reads along with annotation as track layers for NGS dataset such as ChIP-seq, RNA-seq, miRNA-seq, DNA-seq.

Author: Jianhong Ou, Yong-Xu Wang, Lihua Julie Zhu

Maintainer: Jianhong Ou <jianhong.ou at umassmed.edu>

Citation (from within R, enter citation("trackViewer")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("trackViewer")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("trackViewer")

biocViews	Software, Visualization
Version	1.6.1
In Bioconductor since	BioC 2.14 (R-3.1) (2 years)
License	GPL (>= 2)
Depends	R (>= 3.1.0), methods, GenomicRanges, grid
Imports	GenomicAlignments, GenomicFeatures, Gviz, pbapply, Rsamtools, rtracklayer, scales, tools, IRanges
LinkingTo
Suggests	biomaRt, TxDb.Hsapiens.UCSC.hg19.knownGene, RUnit, BiocGenerics, BiocStyle, knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me	coMET
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	trackViewer_1.6.1.tar.gz
Windows Binary	trackViewer_1.6.1.zip
Mac OS X 10.6 (Snow Leopard)	trackViewer_1.6.1.tgz
Mac OS X 10.9 (Mavericks)	trackViewer_1.6.1.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/trackViewer/tree/release-3.2
Package Short Url	http://bioconductor.org/packages/trackViewer/
Package Downloads Report	Download Stats

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