To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("GeneNetworkBuilder")
In most cases, you don't need to download the package archive at all.
Bioconductor version: 3.2
Appliation for discovering direct or indirect targets of transcription factors using ChIP-chip or ChIP-seq, and microarray or RNA-seq gene expression data. Inputting a list of genes of potential targets of one TF from ChIP-chip or ChIP-seq, and the gene expression results, GeneNetworkBuilder generates a regulatory network of the TF.
Author: Jianhong Ou , Haibo Liu, Heidi A Tissenbaum and Lihua Julie Zhu
Maintainer: Jianhong Ou <jianhong.ou at umassmed.edu>
Citation (from within R,
enter citation("GeneNetworkBuilder")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("GeneNetworkBuilder")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GeneNetworkBuilder")
GeneNetworkBuilder Vignette | ||
Reference Manual | ||
Text | NEWS |
biocViews | GraphAndNetwork, Microarray, Sequencing, Software |
Version | 1.12.0 |
In Bioconductor since | BioC 2.11 (R-2.15) (3.5 years) |
License | GPL (>= 2) |
Depends | R (>= 2.15.1), Rcpp (>= 0.9.13), graph |
Imports | plyr, graph |
LinkingTo | Rcpp |
Suggests | RUnit, BiocGenerics, Rgraphviz, XML, RCytoscape, RBGL, knitr |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | GeneNetworkBuilder_1.12.0.tar.gz |
Windows Binary | GeneNetworkBuilder_1.12.0.zip (32- & 64-bit) |
Mac OS X 10.6 (Snow Leopard) | GeneNetworkBuilder_1.12.0.tgz |
Mac OS X 10.9 (Mavericks) | GeneNetworkBuilder_1.12.0.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/GeneNetworkBuilder/tree/release-3.2 |
Package Short Url | http://bioconductor.org/packages/GeneNetworkBuilder/ |
Package Downloads Report | Download Stats |
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