- Home
- Bioconductor 3.2
- Software Packages
- EBImage
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("EBImage")
In most cases, you don't need to download the package archive at all.
EBImage
|
Image processing and analysis toolbox for R
Bioconductor version: 3.2
EBImage provides general purpose functionality for image processing and analysis. In the context of (high-throughput) microscopy-based cellular assays, EBImage offers tools to segment cells and extract quantitative cellular descriptors. This allows the automation of such tasks using the R programming language and facilitates the use of other tools in the R environment for signal processing, statistical modeling, machine learning and visualization with image data.
Author: Andrzej Oleś, Gregoire Pau, Mike Smith, Oleg Sklyar, Wolfgang Huber, with contributions from Joseph Barry and Philip A. Marais
Maintainer: Andrzej Oleś <andrzej.oles at embl.de>
Citation (from within R,
enter citation("EBImage")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("EBImage")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("EBImage")
| HTML | Introduction to EBImage | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Software, Visualization |
| Version | 4.12.2 |
| In Bioconductor since | BioC 1.8 (R-2.3) (10 years) |
| License | LGPL |
| Depends | |
| Imports | BiocGenerics(>= 0.7.1), methods, graphics, grDevices, stats, abind, tiff, jpeg, png, locfit, fftwtools (>= 0.9-7) |
| LinkingTo | |
| Suggests | BiocStyle, digest, knitr, rmarkdown |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | CRImage, DonaPLLP2013, FISHalyseR, flowcatchR, HD2013SGI, imageHTS |
| Imports Me | flowCHIC |
| Suggests Me | DmelSGI, ggtree, HilbertVis |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | EBImage_4.12.2.tar.gz |
| Windows Binary | EBImage_4.12.2.zip (32- & 64-bit) |
| Mac OS X 10.6 (Snow Leopard) | EBImage_4.12.0.tgz |
| Mac OS X 10.9 (Mavericks) | EBImage_4.12.2.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/EBImage/tree/release-3.2 |
| Package Short Url | http://bioconductor.org/packages/EBImage/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
