To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("AnnotationForge")

In most cases, you don't need to download the package archive at all.

AnnotationForge

Code for Building Annotation Database Packages

Bioconductor version: 3.2

Provides code for generating Annotation packages and their databases. Packages produced are intended to be used with AnnotationDbi.

Author: Marc Carlson, Herve Pages

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("AnnotationForge")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("AnnotationForge")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("AnnotationForge")

PDF		AnnotationForge: Creating select Interfaces for custom Annotation resources
PDF		Creating probe packages
PDF		SQLForge: An easy way to create a new annotation package with a standard database schema.
HTML		Making New Organism Packages
PDF		Reference Manual
Text		NEWS

biocViews	Annotation, Infrastructure, Software
Version	1.12.2
In Bioconductor since	BioC 2.11 (R-2.15) (3.5 years)
License	Artistic-2.0
Depends	R (>= 2.7.0), methods, utils, BiocGenerics(>= 0.15.10), Biobase(>= 1.17.0), AnnotationDbi(>= 1.31.19), org.Hs.eg.db
Imports	methods, utils, DBI, RSQLite, BiocGenerics, S4Vectors, Biobase
LinkingTo
Suggests	DBI (>= 0.2-4), RSQLite (>= 0.6-4), XML, RCurl, hgu95av2.db, human.db0, affy, Homo.sapiens, hom.Hs.inp.db, GO.db, BiocStyle, knitr
SystemRequirements
Enhances
URL
Depends On Me
Imports Me	AnnotationHubData, GGHumanMethCancerPanelv1.db, GOstats
Suggests Me	AnnotationDbi, AnnotationHub
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	AnnotationForge_1.12.2.tar.gz
Windows Binary	AnnotationForge_1.12.2.zip
Mac OS X 10.6 (Snow Leopard)	AnnotationForge_1.12.0.tgz
Mac OS X 10.9 (Mavericks)	AnnotationForge_1.12.2.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/AnnotationForge/tree/release-3.2
Package Short Url	http://bioconductor.org/packages/AnnotationForge/
Package Downloads Report	Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Please read the posting guide. Post questions about Bioconductor to one of the following locations: