To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("cytofkit")

In most cases, you don't need to download the package archive at all.

cytofkit

cytofkit: an integrated analysis pipeline for mass cytometry data

Bioconductor version: 3.2

An integrated mass cytometry data analysis pipeline that enables simultaneous illustration of cellular diversity and progression.

Author: Jinmiao Chen, Hao Chen

Maintainer: Jinmiao Chen <Chen_Jinmiao at immunol.a-star.edu.sg>, Hao Chen <chen_hao at immunol.a-star.edu.sg>

Citation (from within R, enter citation("cytofkit")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("cytofkit")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cytofkit")

HTML		Cytofkit: Integrated Mass Cytometry Data Analysis Pipeline
HTML		Cytofkit: Quick Start
PDF		Reference Manual
Text		NEWS

biocViews	BiomedicalInformatics, CellBiology, Clustering, DimensionReduction, FlowCytometry, GUI, Software
Version	1.2.4
In Bioconductor since	BioC 3.1 (R-3.2) (1 year)
License	Artistic-2.0
Depends	R (>= 2.10.0), ggplot2 (>= 0.9.3.1), plyr
Imports	tcltk, stats, Rtsne, e1071, flowCore, gplots, VGAM, reshape, reshape2, shiny, vegan, Biobase, doParallel, pdist, igraph (>= 1.0.1), RANN (>= 2.5), Rcpp (>= 0.12.0)
LinkingTo	Rcpp
Suggests	knitr, RUnit, testthat, BiocGenerics
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	cytofkit_1.2.4.tar.gz
Windows Binary	cytofkit_1.2.4.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	cytofkit_1.2.0.tgz
Mac OS X 10.9 (Mavericks)	cytofkit_1.2.4.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/cytofkit/tree/release-3.2
Package Short Url	http://bioconductor.org/packages/cytofkit/
Package Downloads Report	Download Stats

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