To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("cghMCR")

In most cases, you don't need to download the package archive at all.

cghMCR

   

Find chromosome regions showing common gains/losses

Bioconductor version: 3.2

This package provides functions to identify genomic regions of interests based on segmented copy number data from multiple samples.

Author: J. Zhang and B. Feng

Maintainer: J. Zhang <jzhang at jimmy.harvard.edu>

Citation (from within R, enter citation("cghMCR")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("cghMCR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cghMCR")

 

PDF cghMCR findMCR
PDF   Reference Manual

Details

biocViews CopyNumberVariation, Microarray, Software
Version 1.28.0
In Bioconductor since BioC 1.8 (R-2.3) (10 years)
License LGPL
Depends methods, DNAcopy, CNTools, limma
Imports BiocGenerics(>= 0.1.6), stats4
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me TCGAbiolinks
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source cghMCR_1.28.0.tar.gz
Windows Binary cghMCR_1.28.0.zip
Mac OS X 10.6 (Snow Leopard) cghMCR_1.28.0.tgz
Mac OS X 10.9 (Mavericks) cghMCR_1.28.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/cghMCR/tree/release-3.2
Package Short Url http://bioconductor.org/packages/cghMCR/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

Fred Hutchinson Cancer Research Center