To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("genotypeeval")
In most cases, you don't need to download the package archive at all.
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Bioconductor version: 3.2
Takes in a gVCF or VCF and reports metrics to assess quality of calls.
Author: Jennifer Tom [aut, cre]
Maintainer: Jennifer Tom <tom.jennifer at gene.com>
Citation (from within R,
enter citation("genotypeeval")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("genotypeeval")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("genotypeeval")
HTML | genotypeeval_vignette | |
Reference Manual | ||
Text | NEWS | |
Text | LICENSE |
biocViews | BatchEffect, DataImport, Genetics, SNP, Sequencing, Software, VariantAnnotation |
Version | 1.0.0 |
In Bioconductor since | BioC 3.2 (R-3.2) (0.5 years) |
License | file LICENSE |
Depends | R (>= 3.2.0), VariantAnnotation |
Imports | ggplot2, rtracklayer, BiocGenerics, GenomicRanges, GenomeInfoDb, IRanges, methods, BiocParallel |
LinkingTo | |
Suggests | knitr, testthat, SNPlocs.Hsapiens.dbSNP141.GRCh38, TxDb.Hsapiens.UCSC.hg38.knownGene |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | genotypeeval_1.0.0.tar.gz |
Windows Binary | genotypeeval_1.0.0.zip |
Mac OS X 10.6 (Snow Leopard) | genotypeeval_1.0.0.tgz |
Mac OS X 10.9 (Mavericks) | genotypeeval_1.0.0.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/genotypeeval/tree/release-3.2 |
Package Short Url | http://bioconductor.org/packages/genotypeeval/ |
Package Downloads Report | Download Stats |
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