- Home
- Bioconductor 3.2
- Software Packages
- TarSeqQC
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("TarSeqQC")
In most cases, you don't need to download the package archive at all.
TarSeqQC
|
TARgeted SEQuencing Experiment Quality Control
Bioconductor version: 3.2
The package allows the representation of targeted experiment in R. This is based on current packages and incorporates functions to do a quality control over this kind of experiments and a fast exploration of the sequenced regions. An xlsx file is generated as output.
Author: Gabriela A. Merino, Cristobal Fresno and Elmer A. Fernandez
Maintainer: Gabriela Merino <gmerino at bdmg.com.ar>
Citation (from within R,
enter citation("TarSeqQC")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("TarSeqQC")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TarSeqQC")
| TarSeqQC: Targeted Sequencing Experiment Quality Control | ||
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Alignment, Coverage, DataImport, QualityControl, Sequencing, Software, TargetedResequencing, Visualization |
| Version | 1.0.3 |
| In Bioconductor since | BioC 3.2 (R-3.2) (0.5 years) |
| License | GPL (>=2) |
| Depends | R (>= 3.2.1), methods, GenomicRanges, Rsamtools(>= 1.20.4), ggplot2, plyr, openxlsx |
| Imports | S4Vectors, IRanges, BiocGenerics, reshape2, GenomeInfoDb, BiocParallel, cowplot |
| LinkingTo | |
| Suggests | RUnit |
| SystemRequirements | |
| Enhances | |
| URL | http://www.bdmg.com.ar |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | TarSeqQC_1.0.3.tar.gz |
| Windows Binary | TarSeqQC_1.0.2.zip |
| Mac OS X 10.6 (Snow Leopard) | TarSeqQC_1.0.0.tgz |
| Mac OS X 10.9 (Mavericks) | TarSeqQC_1.0.3.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/TarSeqQC/tree/release-3.2 |
| Package Short Url | http://bioconductor.org/packages/TarSeqQC/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
