To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("graph")

In most cases, you don't need to download the package archive at all.

graph

graph: A package to handle graph data structures

Bioconductor version: Release (3.4)

A package that implements some simple graph handling capabilities.

Author: R. Gentleman, Elizabeth Whalen, W. Huber, S. Falcon

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("graph")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("graph")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("graph")

PDF	R Script	Attributes for Graph Objects
PDF	R Script	clusterGraph and distGraph
PDF	R Script	Graph
PDF	R Script	Graph Design
PDF	R Script	graphBAM and MultiGraph classes
PDF		Reference Manual

Details

biocViews	GraphAndNetwork, Software
Version	1.52.0
In Bioconductor since	BioC 1.6 (R-2.1) or earlier (> 12 years)
License	Artistic-2.0
Depends	R (>= 2.10), methods, BiocGenerics(>= 0.13.11)
Imports	stats, stats4, utils
LinkingTo
Suggests	SparseM (>= 0.36), XML, RBGL, RUnit, cluster
SystemRequirements
Enhances	Rgraphviz
URL
Depends On Me	apComplex, biocGraph, BioMVCClass, BioNet, CellNOptR, clipper, CNORfeeder, ddgraph, FEM, flowMerge, gaggle, gaucho, GOFunction, GOstats, GraphAT, GSEABase, hypergraph, keggorthology, maigesPack, MineICA, NCIgraph, NetSAM, pathRender, Pigengene, pkgDepTools, ppiData, RbcBook1, RBGL, RBioinf, RCy3, RCyjs, RCytoscape, RDAVIDWebService, Rgraphviz, ROntoTools, RpsiXML, SNAData, SRAdb, ToPASeq, topGO, vtpnet, yeastExpData
Imports Me	alpine, AnalysisPageServer, BgeeDB, BiocCheck, biocGraph, biocViews, CAMERA, Category, categoryCompare, ChIPpeakAnno, CHRONOS, CytoML, DEGraph, DEsubs, EnrichmentBrowser, FEM, flowCL, flowClust, flowCore, flowUtils, flowWorkspace, gage, GeneNetworkBuilder, GENESIS, GOFunction, GOSim, GOstats, GraphAT, graphite, gwascat, HTSanalyzeR, hyperdraw, KEGGgraph, keggorthology, keggorthology, mirIntegrator, mvGST, NCIgraph, nem, netresponse, OncoSimulR, openCyto, OrganismDbi, pathview, PCpheno, pkgDepTools, ppiStats, qpgraph, RamiGO, RchyOptimyx, RGraph2js, rsbml, Rtreemix, SplicingGraphs, Streamer, VariantFiltering
Suggests Me	AnnotationDbi, BiocCaseStudies, DEGraph, EBcoexpress, ecolitk, GeneAnswers, KEGGlincs, mmnet, MmPalateMiRNA, netbenchmark, NetPathMiner, rBiopaxParser, rTRM, S4Vectors, SPIA, VariantTools
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	graph_1.52.0.tar.gz
Windows Binary	graph_1.52.0.zip (32- & 64-bit)
Mac OS X 10.9 (Mavericks)	graph_1.52.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/graph/tree/release-3.4
Package Short Url	http://bioconductor.org/packages/graph/
Package Downloads Report	Download Stats

Documentation »

Bioconductor

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Workflows for learning and use.
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Videos.
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