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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("OrganismDbi")
In most cases, you don't need to download the package archive at all.
OrganismDbi
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Software to enable the smooth interfacing of different database packages
Bioconductor version: Release (3.4)
The package enables a simple unified interface to several annotation packages each of which has its own schema by taking advantage of the fact that each of these packages implements a select methods.
Author: Marc Carlson, Herve Pages, Martin Morgan, Valerie Obenchain
Maintainer: Biocore Data Team <maintainer at bioconductor.org>
Citation (from within R,
enter citation("OrganismDbi")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("OrganismDbi")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("OrganismDbi")
| R Script | OrganismDbi: A meta framework for Annotation Packages | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Annotation, Infrastructure, Software |
| Version | 1.16.0 |
| In Bioconductor since | BioC 2.11 (R-2.15) (4.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.14.0), methods, BiocGenerics(>= 0.15.10), AnnotationDbi(>= 1.33.15), GenomicFeatures(>= 1.23.31) |
| Imports | Biobase, BiocInstaller, GenomicRanges, graph, IRanges, RBGL, RSQLite, S4Vectors(>= 0.9.25), stats |
| LinkingTo | |
| Suggests | Homo.sapiens, Rattus.norvegicus, BSgenome.Hsapiens.UCSC.hg19, AnnotationHub, FDb.UCSC.tRNAs, rtracklayer, biomaRt, RUnit |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | Homo.sapiens, Mus.musculus, Rattus.norvegicus |
| Imports Me | AnnotationHubData, epivizrData, ggbio |
| Suggests Me | ChIPpeakAnno, epivizrStandalone |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | OrganismDbi_1.16.0.tar.gz |
| Windows Binary | OrganismDbi_1.16.0.zip |
| Mac OS X 10.9 (Mavericks) | OrganismDbi_1.16.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/OrganismDbi/tree/release-3.4 |
| Package Short Url | http://bioconductor.org/packages/OrganismDbi/ |
| Package Downloads Report | Download Stats |
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