To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("CHRONOS")
In most cases, you don't need to download the package archive at all.
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Bioconductor version: Release (3.4)
A package used for efficient unraveling of the inherent dynamic properties of pathways. MicroRNA-mediated subpathway topologies are extracted and evaluated by exploiting the temporal transition and the fold change activity of the linked genes/microRNAs.
Author: Aristidis G. Vrahatis, Konstantina Dimitrakopoulou, Panos Balomenos
Maintainer: Panos Balomenos <balomenos at upatras.gr>
Citation (from within R,
enter citation("CHRONOS")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("CHRONOS")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CHRONOS")
R Script | CHRONOS | |
Reference Manual | ||
Text | NEWS |
biocViews | GraphAndNetwork, KEGG, Pathways, Software, SystemsBiology |
Version | 1.2.1 |
In Bioconductor since | BioC 3.3 (R-3.3) (1 year) |
License | GPL-2 |
Depends | R (>= 3.3) |
Imports | XML, RCurl, RBGL, parallel, foreach, doParallel, openxlsx, circlize, graph, stats, utils, grDevices, graphics, methods, biomaRt |
LinkingTo | |
Suggests | RUnit, BiocGenerics, knitr |
SystemRequirements | Java version >= 1.7, Pandoc |
Enhances | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | CHRONOS_1.2.1.tar.gz |
Windows Binary | CHRONOS_1.2.1.zip |
Mac OS X 10.9 (Mavericks) | CHRONOS_1.2.1.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/CHRONOS/tree/release-3.4 |
Package Short Url | http://bioconductor.org/packages/CHRONOS/ |
Package Downloads Report | Download Stats |
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