To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RCy3")
In most cases, you don't need to download the package archive at all.
RCy3
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Display and manipulate graphs in Cytoscape >= 3.3.0
Bioconductor version: Release (3.4)
Vizualize, analyze and explore graphs, connecting R to Cytoscape (>= 3.3.0).
Author: Tanja Muetze, Georgi Kolishovski, Paul Shannon
Maintainer: Tanja Muetze <tanja.muetze14 at alumni.imperial.ac.uk>, Georgi Kolishovski <g_kolishv at yahoo.com>, Paul Shannon <pshannon at systemsbiology.org>
Citation (from within R,
enter citation("RCy3")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RCy3")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RCy3")
| R Script | RCy3 Overview | |
| Reference Manual | ||
| Text | README | |
| Text | NEWS |
Details
| biocViews | GraphAndNetwork, Network, Software, ThirdPartyClient, Visualization |
| Version | 1.5.2 |
| In Bioconductor since | BioC 3.2 (R-3.2) (1.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.2), graph(>= 1.48.0) |
| Imports | httr, methods, RCurl, RJSONIO |
| LinkingTo | |
| Suggests | BiocGenerics, RUnit, knitr, igraph, RColorBrewer, paxtoolsr, rmarkdown |
| SystemRequirements | Cytoscape (>= 3.3.0), CyREST (>= 3.3.7), Java (>=8) |
| Enhances | |
| URL | https://github.com/tmuetze/Bioconductor_RCy3_the_new_RCytoscape |
| BugReports | https://github.com/tmuetze/Bioconductor_RCy3_the_new_RCytoscape/issues |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | RCy3_1.5.2.tar.gz |
| Windows Binary | RCy3_1.5.2.zip |
| Mac OS X 10.9 (Mavericks) | RCy3_1.5.2.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/RCy3/tree/release-3.4 |
| Package Short Url | http://bioconductor.org/packages/RCy3/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
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Support »
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