To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("Rsamtools")
In most cases, you don't need to download the package archive at all.
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Bioconductor version: Release (3.4)
This package provides an interface to the 'samtools', 'bcftools', and 'tabix' utilities (see 'LICENCE') for manipulating SAM (Sequence Alignment / Map), FASTA, binary variant call (BCF) and compressed indexed tab-delimited (tabix) files.
Author: Martin Morgan, Herv\'e Pag\`es, Valerie Obenchain, Nathaniel Hayden
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
Citation (from within R,
enter citation("Rsamtools")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("Rsamtools")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Rsamtools")
R Script | An introduction to Rsamtools | |
R Script | Using samtools C libraries | |
Reference Manual | ||
Text | NEWS | |
Text | LICENSE | |
Video | pileup in Rsamtools |
Follow Installation instructions to use this package in your R session.
Package Source | Rsamtools_1.26.2.tar.gz |
Windows Binary | Rsamtools_1.26.2.zip (32- & 64-bit) |
Mac OS X 10.9 (Mavericks) | Rsamtools_1.26.2.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/Rsamtools/tree/release-3.4 |
Package Short Url | http://bioconductor.org/packages/Rsamtools/ |
Package Downloads Report | Download Stats |
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