To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("AnnotationHubData")

In most cases, you don't need to download the package archive at all.

AnnotationHubData

Transform public data resources into Bioconductor Data Structures

Bioconductor version: Release (3.4)

These recipes convert a wide variety and a growing number of public bioinformatic data sets into easily-used standard Bioconductor data structures.

Author: Martin Morgan [ctb], Marc Carlson [ctb], Dan Tenenbaum [ctb], Sonali Arora [ctb], Paul Shannon [ctb], Bioconductor Package Maintainer [cre]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("AnnotationHubData")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("AnnotationHubData")

HTML	R Script	Introduction to AnnotationHubData
PDF		Reference Manual
Text		NEWS

biocViews	DataImport, Software
Version	1.4.1
In Bioconductor since	BioC 3.2 (R-3.2) (1.5 years)
License	Artistic-2.0
Depends	R (>= 3.2.2), methods, utils, S4Vectors(>= 0.7.21), IRanges(>= 2.3.23), GenomicRanges, AnnotationHub
Imports	GenomicFeatures, Rsamtools, rtracklayer, BiocGenerics, jsonlite, BiocInstaller, httr, AnnotationDbi, Biobase, Biostrings, DBI, GEOquery, GenomeInfoDb, OrganismDbi, RSQLite, rBiopaxParser, AnnotationForge, futile.logger (>= 1.3.0), XML, xml2, curl
LinkingTo
Suggests	RUnit, knitr, RMySQL, BiocStyle, grasp2db
SystemRequirements
Enhances
URL
Depends On Me	ExperimentHubData, ProteomicsAnnotationHubData
Imports Me
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	AnnotationHubData_1.4.1.tar.gz
Windows Binary	AnnotationHubData_1.4.1.zip
Mac OS X 10.9 (Mavericks)	AnnotationHubData_1.4.1.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/AnnotationHubData/tree/release-3.4
Package Short Url	http://bioconductor.org/packages/AnnotationHubData/
Package Downloads Report	Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Please read the posting guide. Post questions about Bioconductor to one of the following locations: