To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("Chicago")
In most cases, you don't need to download the package archive at all.
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Bioconductor version: Release (3.4)
A pipeline for analysing Capture Hi-C data.
Author: Jonathan Cairns, Paula Freire Pritchett, Steven Wingett, Mikhail Spivakov
Maintainer: Mikhail Spivakov <spivakov at babraham.ac.uk>
Citation (from within R,
enter citation("Chicago")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("Chicago")
HTML | R Script | CHiCAGO Vignette |
Reference Manual | ||
Text | NEWS |
biocViews | Epigenetics, HiC, Sequencing, Software |
Version | 1.2.0 |
In Bioconductor since | BioC 3.3 (R-3.3) (1 year) |
License | Artistic-2.0 |
Depends | R (>= 3.2), data.table |
Imports | matrixStats, MASS, Hmisc, Delaporte, methods, grDevices, graphics, stats, utils |
LinkingTo | |
Suggests | argparser, BiocStyle, knitr, rmarkdown, PCHiCdata, testthat, Rsamtools, GenomicInteractions, GenomicRanges, IRanges, AnnotationHub |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | PCHiCdata |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | Chicago_1.2.0.tar.gz |
Windows Binary | Chicago_1.2.0.zip |
Mac OS X 10.9 (Mavericks) | Chicago_1.2.0.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/Chicago/tree/release-3.4 |
Package Short Url | http://bioconductor.org/packages/Chicago/ |
Package Downloads Report | Download Stats |
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