To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Chicago")

In most cases, you don't need to download the package archive at all.

Chicago

CHiCAGO: Capture Hi-C Analysis of Genomic Organization

Bioconductor version: Release (3.4)

A pipeline for analysing Capture Hi-C data.

Author: Jonathan Cairns, Paula Freire Pritchett, Steven Wingett, Mikhail Spivakov

Maintainer: Mikhail Spivakov <spivakov at babraham.ac.uk>

Citation (from within R, enter citation("Chicago")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("Chicago")

biocViews	Epigenetics, HiC, Sequencing, Software
Version	1.2.0
In Bioconductor since	BioC 3.3 (R-3.3) (1 year)
License	Artistic-2.0
Depends	R (>= 3.2), data.table
Imports	matrixStats, MASS, Hmisc, Delaporte, methods, grDevices, graphics, stats, utils
LinkingTo
Suggests	argparser, BiocStyle, knitr, rmarkdown, PCHiCdata, testthat, Rsamtools, GenomicInteractions, GenomicRanges, IRanges, AnnotationHub
SystemRequirements
Enhances
URL
Depends On Me	PCHiCdata
Imports Me
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	Chicago_1.2.0.tar.gz
Windows Binary	Chicago_1.2.0.zip
Mac OS X 10.9 (Mavericks)	Chicago_1.2.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/Chicago/tree/release-3.4
Package Short Url	http://bioconductor.org/packages/Chicago/
Package Downloads Report	Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Please read the posting guide. Post questions about Bioconductor to one of the following locations: