To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("TitanCNA")
In most cases, you don't need to download the package archive at all.
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Bioconductor version: Release (3.4)
Hidden Markov model to segment and predict regions of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH), and estimate cellular prevalenece of clonal clusters in tumour whole genome sequencing data.
Author: Gavin Ha, Sohrab P Shah
Maintainer: Gavin Ha <gavinha at broadinstitute.org>, Sohrab P Shah <sshah at bccrc.ca>
Citation (from within R,
enter citation("TitanCNA")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("TitanCNA")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TitanCNA")
R Script | TitanCNA | |
Reference Manual | ||
Text | README |
biocViews | CopyNumberVariation, DNASeq, ExomeSeq, Genetics, GenomicVariation, HiddenMarkovModel, Sequencing, Software, StatisticalMethod, WholeGenome |
Version | 1.12.0 |
In Bioconductor since | BioC 2.14 (R-3.1) (3 years) |
License | GPL-3 |
Depends | R (>= 3.2.0), foreach (>= 1.4.2), IRanges(>= 2.2.4), GenomicRanges(>= 1.20.5), Rsamtools(>= 1.20.4), GenomeInfoDb(>= 1.4.0) |
Imports | |
LinkingTo | |
Suggests | |
SystemRequirements | |
Enhances | |
URL | https://github.com/gavinha/TitanCNA |
Depends On Me | |
Imports Me | |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | TitanCNA_1.12.0.tar.gz |
Windows Binary | TitanCNA_1.12.0.zip (32- & 64-bit) |
Mac OS X 10.9 (Mavericks) | TitanCNA_1.12.0.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/TitanCNA/tree/release-3.4 |
Package Short Url | http://bioconductor.org/packages/TitanCNA/ |
Package Downloads Report | Download Stats |
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