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ACE, ADAM, ADAMgui, ADImpute, AffiXcan, affycoretools, aggregateBioVar, AHMassBank, alabaster, alabaster.base, alabaster.bumpy, alabaster.files, alabaster.mae, alabaster.matrix, alabaster.ranges, alabaster.sce, alabaster.schemas, alabaster.se, alabaster.spatial, alabaster.string, alabaster.vcf, ALDEx2, alevinQC, AllelicImbalance, AlpsNMR, AMARETTO, AMOUNTAIN, amplican, AneuFinder, animalcules, annotate, AnnotationDbi, AnnotationFilter, AnnotationForge, AnnotationHub, AnnotationHubData, annotationTools, annotatr, AnVIL, AnVILAz, AnVILBase, AnVILBilling, AnVILGCP, AnVILPublish, AnVILWorkflow, APAlyzer, APL, arrayQualityMetrics, artMS, ASGSCA, ASICS, AssessORF, ASSIGN, assorthead, ATACseqQC, ATACseqTFEA, atena, atSNP, AUCell, autonomics, awst, BaalChIP, bacon, bamsignals, BANDITS, Banksy, banocc, barcodetrackR, basecallQC, BASiCS, basilisk, basilisk.utils, batchelor, BatchQC, bayNorm, baySeq, beachmat, beachmat.hdf5, beadarray, BeadDataPackR, BEclear, beer, BERT, betaHMM, bettr, BG2, 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profileplyr, profileScoreDist, progeny, projectR, pRoloc, pRolocGUI, PRONE, Prostar, ProteoDisco, ProteoMM, PSMatch, ptairMS, PureCN, PWMEnrich, qcmetrics, QDNAseq, QFeatures, qmtools, qpgraph, qsea, qsmooth, QSutils, qsvaR, QTLExperiment, Qtlizer, quantiseqr, quantro, QuasR, R3CPET, RadioGx, raer, RaggedExperiment, RAIDS, rain, ramwas, randRotation, RAREsim, Rarr, rawDiag, rawrr, RBGL, RBioFormats, Rbowtie, Rbwa, rcellminer, rCGH, RcisTarget, Rcollectl, RCSL, Rcwl, RcwlPipelines, RCX, RCy3, RCyjs, ReactomePA, recount, recount3, recountmethylation, recoup, RedeR, RedisParam, regionalpcs, regioneR, regioneReloaded, regsplice, regutools, ResidualMatrix, RESOLVE, retrofit, ReUseData, rexposome, rfaRm, Rfastp, rfPred, RgnTX, rgoslin, RGraph2js, RGSEA, rhdf5, rhdf5client, rhdf5filters, Rhdf5lib, rhinotypeR, Rhisat2, Rhtslib, RiboCrypt, RiboProfiling, riboSeqR, ribosomeProfilingQC, rifi, rifiComparative, RIVER, RJMCMCNucleosomes, RMassBank, RNAmodR, RNAmodR.AlkAnilineSeq, RNAmodR.ML, RNAmodR.RiboMethSeq, rnaseqcomp, RNAseqCovarImpute, RnaSeqSampleSize, Rnits, roastgsa, ROC, ROCpAI, rols, ropls, rprimer, rpx, rqt, rrvgo, Rsamtools, rScudo, rsemmed, rSWeeP, RTCGAToolbox, RTN, RTNduals, RTNsurvival, Rtpca, rTRM, RUVSeq, Rvisdiff, RVS, rWikiPathways, S4Arrays, S4Vectors, sampleClassifier, sangerseqR, satuRn, SC3, ScaledMatrix, scanMiR, scanMiRApp, SCArray.sat, scater, scBubbletree, scCB2, scClassify, sccomp, scDblFinder, scDD, scDDboost, scDesign3, scDiagnostics, scDotPlot, scds, SCFA, scFeatureFilter, scFeatures, scifer, scmap, scMerge, scMitoMut, SCnorm, scone, scoreInvHap, scoup, scp, scPCA, scPipe, scran, scrapper, scReClassify, screenCounter, ScreenR, scRepertoire, scRNAseqApp, scruff, scTHI, scTreeViz, scuttle, scviR, seahtrue, sechm, segmentSeq, selectKSigs, seq.hotSPOT, seqCAT, SeqGate, seqLogo, seqPattern, seqsetvis, SeqSQC, SeqVarTools, sesame, SEtools, sevenC, SGCP, SGSeq, SharedObject, shinyepico, shinyMethyl, ShortRead, SigFuge, signatureSearch, SigsPack, SIMD, SimFFPE, similaRpeak, SIMLR, simPIC, simpleSeg, sincell, SingleCellAlleleExperiment, SingleCellExperiment, singleCellTK, SingleR, singscore, SiPSiC, sitadela, sitePath, sketchR, slalom, slingshot, SMAD, smartid, smoothclust, snapcount, snifter, SNPediaR, SNPhood, soGGi, SpaceMarkers, SpaNorm, sparrow, SparseArray, sparseMatrixStats, sparsenetgls, SparseSignatures, spaSim, SpatialCPie, spatialDE, SpatialExperiment, SpatialFeatureExperiment, spatialHeatmap, speckle, specL, Spectra, SpectralTAD, SpectraQL, SPIAT, spicyR, spillR, splatter, SplineDV, splots, SpotClean, SPOTlight, SpotSweeper, spqn, SQLDataFrame, squallms, sRACIPE, sSNAPPY, ssrch, StabMap, stageR, STATegRa, Statial, statTarget, stJoincount, strandCheckR, struct, Structstrings, structToolbox, SubCellBarCode, SUITOR, SummarizedExperiment, sva, svaRetro, SVMDO, swfdr, switchde, synapsis, synapter, SynExtend, synlet, syntenet, systemPipeR, systemPipeShiny, systemPipeTools, tadar, TADCompare, tanggle, TAPseq, TargetDecoy, 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curatedMetagenomicData, curatedOvarianData, curatedPCaData, curatedTBData, curatedTCGAData, CytoMethIC, DAPARdata, depmap, derfinderData, DExMAdata, DNAZooData, dorothea, DropletTestFiles, DuoClustering2018, easierData, ELMER.data, emtdata, eoPredData, epimutacionsData, ewceData, fourDNData, furrowSeg, gDNAinRNAseqData, gDRtestData, GenomicDistributionsData, GeuvadisTranscriptExpr, GSE103322, GSE13015, GSE159526, GSE62944, HarmanData, HCAData, HCATonsilData, HD2013SGI, HDCytoData, healthyControlsPresenceChecker, HelloRangesData, HiCDataHumanIMR90, HiContactsData, HighlyReplicatedRNASeq, HMP16SData, HumanAffyData, humanHippocampus2024, IHWpaper, imcdatasets, JohnsonKinaseData, LegATo, LRcellTypeMarkers, mCSEAdata, mcsurvdata, MerfishData, MetaGxOvarian, MetaGxPancreas, MethylAidData, methylclockData, MethylSeqData, MicrobiomeBenchmarkData, microbiomeDataSets, minionSummaryData, MOFAdata, MouseAgingData, MouseGastrulationData, MouseThymusAgeing, msigdb, MSMB, msqc1, multiWGCNAdata, muscData, nanotubes, NestLink, NetActivityData, OnassisJavaLibs, optimalFlowData, orthosData, parathyroidSE, PasillaTranscriptExpr, PCHiCdata, PepsNMRData, preciseTADhub, ProteinGymR, ptairData, raerdata, rcellminerData, RforProteomics, RGMQLlib, RNAmodR.Data, RnaSeqSampleSizeData, sampleClassifierData, scaeData, scanMiRData, scATAC.Explorer, SCLCBam, scMultiome, scpdata, scRNAseq, seventyGeneData, SFEData, SimBenchData, Single.mTEC.Transcriptomes, SingleCellMultiModal, smokingMouse, SpatialDatasets, spatialDmelxsim, spatialLIBD, STexampleData, SubcellularSpatialData, systemPipeRdata, TabulaMurisData, TabulaMurisSenisData, tartare, TCGAbiolinksGUI.data, TCGAWorkflowData, TENxBrainData, TENxBUSData, TENxPBMCData, TENxVisiumData, TENxXeniumData, timecoursedata, TimerQuant, tissueTreg, TMExplorer, TransOmicsData, tuberculosis, tweeDEseqCountData, VariantToolsData, VectraPolarisData, WeberDivechaLCdata, zebrafishRNASeq, annotation, arrays, BiocMetaWorkflow, CAGEWorkflow, chipseqDB, csawUsersGuide, EGSEA123, ExpressionNormalizationWorkflow, generegulation, highthroughputassays, liftOver, maEndToEnd, recountWorkflow, RNAseq123, seqpac, sequencing, SingscoreAMLMutations, spicyWorkflow, variants, aIc, asteRisk, BiocManager, corrmeta, cyjShiny, DEHOGT, EHRtemporalVariability, genetic.algo.optimizeR, ggBubbles, GSEMA, ipsRdbs, magmaR, MarZIC, multiclassPairs, MVN, net4pg, NutrienTrackeR, openSkies, PlackettLuce, Rediscover, rjsoncons, rworkflows, SCIntRuler, StepReg, TFactSR |
