Rvisdiff
This is the development version of Rvisdiff; for the stable release version, see Rvisdiff.
Interactive Graphs for Differential Expression
Bioconductor version: Development (3.21)
Creates a muti-graph web page which allows the interactive exploration of differential expression results. The graphical web interface presents results as a table which is integrated with five interactive graphs: MA-plot, volcano plot, box plot, lines plot and cluster heatmap. Graphical aspect and information represented in the graphs can be customized by means of user controls. Final graphics can be exported as PNG format.
Author: Carlos Prieto [aut] (ORCID:
Maintainer: David Barrios <metal at usal.es>
citation("Rvisdiff")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("Rvisdiff")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Rvisdiff")| Visualize Differential Expression results | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataRepresentation, DifferentialExpression, RNASeq, Software, Visualization |
| Version | 1.5.0 |
| In Bioconductor since | BioC 3.18 (R-4.3) (1 year) |
| License | GPL-2 | GPL-3 |
| Depends | R (>= 4.3.0) |
| Imports | edgeR, utils |
| System Requirements | |
| URL | https://github.com/BioinfoUSAL/Rvisdiff/ |
| Bug Reports | https://github.com/BioinfoUSAL/Rvisdiff/issues/ |
See More
| Suggests | knitr, rmarkdown, DESeq2, limma, SummarizedExperiment, airway, BiocStyle, matrixTests, BiocManager |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | Rvisdiff_1.5.0.tar.gz |
| Windows Binary (x86_64) | Rvisdiff_1.5.0.zip (64-bit only) |
| macOS Binary (x86_64) | Rvisdiff_1.5.0.tgz |
| macOS Binary (arm64) | Rvisdiff_1.5.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/Rvisdiff |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Rvisdiff |
| Bioc Package Browser | https://code.bioconductor.org/browse/Rvisdiff/ |
| Package Short Url | https://bioconductor.org/packages/Rvisdiff/ |
| Package Downloads Report | Download Stats |