brgedata
This is the development version of brgedata; for the stable release version, see brgedata.
Exposures, Gene Expression and Methylation data for ilustration purpouses
Bioconductor version: Development (3.21)
This package contains several sets of omics data including Gene Expression (ExpressionSet), Methylation (GenomicRatioSet), Proteome and Exposome (ExposomeSet). This data is used in vignettes and exaples at MEAL, MultiDataSet and omicRexposome.
Author: Dolors Pelegri-Siso [aut, cre], Carlos Ruiz-Arenas [aut], Carles Hernandez-Ferrer [aut], Juan R. Gonzalez [aut]
Maintainer: Dolors Pelegri-Siso <dolors.pelegri at isglobal.org>
citation("brgedata")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("brgedata")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("brgedata")| brgedata -- data R package with three omic data-set and exposome data-set from the same Spanish pupulation | HTML | R Script |
| Reference Manual | ||
| LICENSE | Text |
Details
| biocViews | ExperimentData, Homo_sapiens_Data, MethylationArrayData, MicroarrayData |
| Version | 1.29.0 |
| License | MIT + file LICENSE |
| Depends | R (>= 3.5.0), Biobase |
| Imports | SummarizedExperiment |
| System Requirements | |
| URL |
See More
| Suggests | minfi, MultiAssayExperiment, knitr, rmarkdown, rexposome, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | MEAL, MultiDataSet, omicRexposome |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | brgedata_1.29.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/brgedata |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/brgedata |
| Package Short Url | https://bioconductor.org/packages/brgedata/ |
| Package Downloads Report | Download Stats |