healthyControlsPresenceChecker
This is the development version of healthyControlsPresenceChecker; for the stable release version, see healthyControlsPresenceChecker.
Dowloads A Gene Expression Dataset From GEO And Checks If It Contains Data Of Healthy Controls Or Not
Bioconductor version: Development (3.21)
A function that reads in the GEO accession code of a gene expression dataset, retrieves its data from GEO, and checks if data of healthy controls are present in the dataset. It returns true if healthy controls data are found, and false otherwise. GEO: Gene Expression Omnibus. ID: identifier code. The GEO datasets are downloaded from the URL
Author: Davide Chicco [aut, cre] (ORCID:
Maintainer: Davide Chicco <davide.chicco at gmail.com>
citation("healthyControlsPresenceChecker")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("healthyControlsPresenceChecker")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("healthyControlsPresenceChecker")| healthyControlsPresenceChecker vignette | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ExperimentData, ExpressionData, GEO, RepositoryData |
| Version | 1.11.0 |
| License | GPL-3 |
| Depends | R (>= 4.0.0) |
| Imports | xml2, GEOquery, geneExpressionFromGEO, magrittr |
| System Requirements | |
| URL | https://github.com/davidechicco/healthyControlsPresenceChecker |
| Bug Reports | https://github.com/davidechicco/healthyControlsPresenceChecker/issues |
See More
| Suggests | RUnit, BiocGenerics, markdown, BiocStyle, knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | healthyControlsPresenceChecker_1.11.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/healthyControlsPresenceChecker |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/healthyControlsPresenceChecker |
| Package Short Url | https://bioconductor.org/packages/healthyControlsPresenceChecker/ |
| Package Downloads Report | Download Stats |