To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("AnnotationForge")
In most cases, you don't need to download the package archive at all.
Bioconductor version: Release (3.4)
Provides code for generating Annotation packages and their databases. Packages produced are intended to be used with AnnotationDbi.
Author: Marc Carlson, Herve Pages
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
Citation (from within R,
enter citation("AnnotationForge")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("AnnotationForge")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("AnnotationForge")
R Script | AnnotationForge: Creating select Interfaces for custom Annotation resources | |
R Script | Creating probe packages | |
R Script | SQLForge: An easy way to create a new annotation package with a standard database schema. | |
HTML | R Script | Making New Organism Packages |
Reference Manual | ||
Text | NEWS |
biocViews | Annotation, Infrastructure, Software |
Version | 1.16.1 |
In Bioconductor since | BioC 2.11 (R-2.15) (4.5 years) |
License | Artistic-2.0 |
Depends | R (>= 2.7.0), methods, utils, BiocGenerics(>= 0.15.10), Biobase(>= 1.17.0), AnnotationDbi(>= 1.33.14) |
Imports | DBI, RSQLite, XML, S4Vectors, RCurl |
LinkingTo | |
Suggests | biomaRt, httr, GenomeInfoDb, Biostrings, affy, hgu95av2.db, human.db0, org.Hs.eg.db, Homo.sapiens, hom.Hs.inp.db, GO.db, BiocStyle, knitr |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | |
Imports Me | AnnotationHubData, GGHumanMethCancerPanelv1.db, GOstats |
Suggests Me | AnnotationDbi, AnnotationHub |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | AnnotationForge_1.16.1.tar.gz |
Windows Binary | AnnotationForge_1.16.1.zip |
Mac OS X 10.9 (Mavericks) | AnnotationForge_1.16.1.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/AnnotationForge/tree/release-3.4 |
Package Short Url | http://bioconductor.org/packages/AnnotationForge/ |
Package Downloads Report | Download Stats |
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