Pierrick Roger
| Snapshot Date: 2024-07-21 14:00 -0400 (Sun, 21 Jul 2024) |
| git_url: https://git.bioconductor.org/packages/biodbChebi |
| git_branch: RELEASE_3_19 |
| git_last_commit: fad38a4 |
| git_last_commit_date: 2024-04-30 11:37:31 -0400 (Tue, 30 Apr 2024) |
| Back to Multiple platform build/check report for BioC 3.19: simplified long |
|
This page was generated on 2024-07-24 09:04 -0400 (Wed, 24 Jul 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4747 |
| palomino7 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4489 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4518 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4467 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 200/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| biodbChebi 1.10.0 (landing page) Pierrick Roger
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
|
To the developers/maintainers of the biodbChebi package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbChebi.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: biodbChebi |
| Version: 1.10.0 |
| Command: E:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:biodbChebi.install-out.txt --library=E:\biocbuild\bbs-3.19-bioc\R\library --no-vignettes --timings biodbChebi_1.10.0.tar.gz |
| StartedAt: 2024-07-21 23:54:35 -0400 (Sun, 21 Jul 2024) |
| EndedAt: 2024-07-21 23:59:11 -0400 (Sun, 21 Jul 2024) |
| EllapsedTime: 276.2 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: biodbChebi.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### E:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:biodbChebi.install-out.txt --library=E:\biocbuild\bbs-3.19-bioc\R\library --no-vignettes --timings biodbChebi_1.10.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'E:/biocbuild/bbs-3.19-bioc/meat/biodbChebi.Rcheck'
* using R version 4.4.1 (2024-06-14 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
gcc.exe (GCC) 13.2.0
GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'biodbChebi/DESCRIPTION' ... OK
* this is package 'biodbChebi' version '1.10.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'biodbChebi' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
ChebiConn 4.19 3.02 180.05
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
biodbChebi.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### E:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD INSTALL biodbChebi ### ############################################################################## ############################################################################## * installing to library 'E:/biocbuild/bbs-3.19-bioc/R/library' * installing *source* package 'biodbChebi' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (biodbChebi)
biodbChebi.Rcheck/tests/testthat.Rout
R version 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2024-07-21 23:58:38.599][biodb::testContext]
biodb.INFO [2024-07-21 23:58:38.602][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-21 23:58:38.604][biodb::testContext] Test context - Generic tests
biodb.INFO [2024-07-21 23:58:38.605][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-21 23:58:38.606][biodb::testContext]
biodb.INFO [2024-07-21 23:58:38.613][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.12.0.
biodb.DEBUG[2024-07-21 23:58:38.616][self$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.19-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-07-21 23:58:38.625][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-21 23:58:38.626][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-07-21 23:58:38.628][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-07-21 23:58:38.629][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:38.630][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:38.631][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:38.633][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-07-21 23:58:38.664][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-07-21 23:58:38.665][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:38.666][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:38.668][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:38.669][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-07-21 23:58:38.670][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-07-21 23:58:38.671][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:38.672][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:38.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:38.675][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-07-21 23:58:38.677][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-07-21 23:58:38.678][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-07-21 23:58:38.679][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:38.680][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:38.681][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:38.682][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-07-21 23:58:38.684][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-07-21 23:58:38.685][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-07-21 23:58:38.686][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:38.687][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:38.688][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:38.690][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-07-21 23:58:38.691][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-07-21 23:58:38.692][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:38.693][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:38.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:38.695][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-07-21 23:58:38.697][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-07-21 23:58:38.698][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-07-21 23:58:38.699][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:38.700][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:38.701][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:38.702][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-07-21 23:58:38.704][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-07-21 23:58:38.705][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:38.706][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:38.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:38.708][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-07-21 23:58:38.709][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-07-21 23:58:38.711][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-07-21 23:58:38.712][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:38.713][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:38.714][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:38.715][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-07-21 23:58:38.717][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-07-21 23:58:38.718][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-07-21 23:58:38.719][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-07-21 23:58:38.720][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-07-21 23:58:38.722][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-07-21 23:58:38.723][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:38.724][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:38.725][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:38.727][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-07-21 23:58:38.728][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-07-21 23:58:38.729][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:38.730][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:38.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:38.733][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-07-21 23:58:38.734][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-07-21 23:58:38.735][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:38.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:38.737][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:38.738][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-07-21 23:58:38.740][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-07-21 23:58:38.741][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:38.742][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:38.743][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:38.744][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-07-21 23:58:38.746][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-07-21 23:58:38.747][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:38.748][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:38.749][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:38.750][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-07-21 23:58:38.752][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-07-21 23:58:38.753][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:38.754][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:38.755][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:38.756][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-07-21 23:58:38.757][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-07-21 23:58:38.761][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-07-21 23:58:38.763][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:38.765][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:38.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:38.768][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-07-21 23:58:38.770][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-07-21 23:58:38.772][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-07-21 23:58:38.774][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:38.776][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:38.777][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:38.780][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-07-21 23:58:38.811][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-21 23:58:38.826][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-07-21 23:58:38.827][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-21 23:58:38.829][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-21 23:58:38.830][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-21 23:58:38.832][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-21 23:58:38.833][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-21 23:58:38.834][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-21 23:58:38.836][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-21 23:58:38.837][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-21 23:58:38.838][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-21 23:58:38.840][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-07-21 23:58:38.842][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-21 23:58:38.843][self$setPropertyValue]
biodb.DEBUG[2024-07-21 23:58:38.844][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-21 23:58:38.846][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-21 23:58:38.846][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-21 23:58:38.846][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-21 23:58:38.846][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-21 23:58:38.846][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-21 23:58:38.847][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-21 23:58:38.849][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 23:58:38.850][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 23:58:38.852][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-21 23:58:38.859][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 23:58:38.860][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 23:58:38.862][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-21 23:58:38.863][self$setPropertyValue]
biodb.DEBUG[2024-07-21 23:58:38.864][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-21 23:58:38.865][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-21 23:58:38.867][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-21 23:58:38.868][self$setPropertyValue]
biodb.DEBUG[2024-07-21 23:58:38.870][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-07-21 23:58:38.872][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-21 23:58:38.873][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-07-21 23:58:38.875][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-21 23:58:38.876][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-21 23:58:38.877][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-21 23:58:38.879][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-21 23:58:38.880][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-21 23:58:38.881][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-21 23:58:38.883][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-21 23:58:38.884][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-21 23:58:38.885][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-21 23:58:38.887][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-07-21 23:58:38.888][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-21 23:58:38.889][self$setPropertyValue]
biodb.DEBUG[2024-07-21 23:58:38.891][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-21 23:58:38.892][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-21 23:58:38.892][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-21 23:58:38.892][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-21 23:58:38.892][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-21 23:58:38.892][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-21 23:58:38.893][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-21 23:58:38.895][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 23:58:38.896][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 23:58:38.897][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-21 23:58:38.899][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 23:58:38.900][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 23:58:38.901][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-21 23:58:38.903][self$setPropertyValue]
biodb.DEBUG[2024-07-21 23:58:38.904][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-21 23:58:38.905][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-21 23:58:38.906][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-21 23:58:38.908][self$setPropertyValue]
biodb.DEBUG[2024-07-21 23:58:38.909][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-07-21 23:58:38.912][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-21 23:58:38.913][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-07-21 23:58:38.914][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-21 23:58:38.916][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-21 23:58:38.917][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-21 23:58:38.918][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-21 23:58:38.920][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-21 23:58:38.921][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-21 23:58:38.922][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-21 23:58:38.924][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-21 23:58:38.925][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-21 23:58:38.926][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-07-21 23:58:38.928][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-21 23:58:38.929][self$setPropertyValue]
biodb.DEBUG[2024-07-21 23:58:38.930][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-21 23:58:38.932][self$setPropertyValue]
biodb.DEBUG[2024-07-21 23:58:38.933][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-21 23:58:38.934][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 23:58:38.935][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 23:58:38.937][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-21 23:58:38.938][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 23:58:38.939][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 23:58:38.940][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-21 23:58:38.942][self$setPropertyValue]
biodb.DEBUG[2024-07-21 23:58:38.943][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-21 23:58:38.944][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-21 23:58:38.946][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-21 23:58:38.947][self$setPropertyValue]
biodb.DEBUG[2024-07-21 23:58:38.949][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-07-21 23:58:38.953][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-21 23:58:38.955][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-07-21 23:58:38.958][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-21 23:58:38.960][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-21 23:58:38.962][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-21 23:58:38.965][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-21 23:58:38.967][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-21 23:58:38.969][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-21 23:58:38.971][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-21 23:58:38.974][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-21 23:58:38.976][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-21 23:58:38.979][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-07-21 23:58:38.981][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-21 23:58:38.983][self$setPropertyValue]
biodb.DEBUG[2024-07-21 23:58:38.984][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-21 23:58:38.986][self$setPropertyValue]
biodb.DEBUG[2024-07-21 23:58:38.987][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-21 23:58:38.988][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 23:58:38.990][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 23:58:38.991][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-21 23:58:38.992][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 23:58:38.993][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 23:58:38.995][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-21 23:58:38.996][self$setPropertyValue]
biodb.DEBUG[2024-07-21 23:58:38.997][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-21 23:58:38.999][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-21 23:58:39.000][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-21 23:58:39.001][self$setPropertyValue]
biodb.DEBUG[2024-07-21 23:58:39.005][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-21 23:58:39.007][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:39.008][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:39.009][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:39.010][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:39.012][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:39.013][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:39.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:39.016][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:39.017][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:39.018][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:39.019][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:39.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:39.022][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:39.023][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:39.024][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:39.025][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:39.027][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:39.028][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:39.029][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:39.030][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:39.032][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:39.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:39.034][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:39.036][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:39.038][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:39.040][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:39.042][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:39.044][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:39.046][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:39.048][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:39.050][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:39.051][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:39.052][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:39.054][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:39.055][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:39.056][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:39.057][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:39.059][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:39.060][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:39.061][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:39.062][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:39.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:39.065][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:39.066][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:39.067][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:39.069][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:39.070][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:39.071][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:39.072][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:39.074][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:39.075][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:39.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:39.077][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:39.078][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:39.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:39.081][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:39.082][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:39.083][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:39.085][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:39.086][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:39.087][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:39.088][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:39.089][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:39.091][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:39.092][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:39.093][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:39.094][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:39.096][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:39.097][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:39.098][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:39.099][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:39.101][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:39.102][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:39.103][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:39.104][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:39.106][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:39.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:39.108][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:39.109][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:39.110][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:39.111][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:39.113][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:39.114][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:39.115][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:39.117][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:39.118][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:39.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:39.126][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-07-21 23:58:39.130][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-07-21 23:58:39.132][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-07-21 23:58:39.134][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-07-21 23:58:39.136][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-07-21 23:58:39.138][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-07-21 23:58:39.140][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-07-21 23:58:39.142][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-07-21 23:58:39.143][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-07-21 23:58:39.145][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-07-21 23:58:39.147][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-21 23:58:39.149][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-07-21 23:58:39.150][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-07-21 23:58:39.152][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-07-21 23:58:39.154][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-07-21 23:58:39.156][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-07-21 23:58:39.158][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-07-21 23:58:39.159][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-07-21 23:58:39.161][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-07-21 23:58:39.163][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-07-21 23:58:39.165][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-07-21 23:58:39.167][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-07-21 23:58:39.169][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-07-21 23:58:39.171][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-07-21 23:58:39.172][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-07-21 23:58:39.174][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-07-21 23:58:39.176][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-07-21 23:58:39.178][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-07-21 23:58:39.180][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-07-21 23:58:39.181][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-07-21 23:58:39.184][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-07-21 23:58:39.187][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-07-21 23:58:39.190][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-07-21 23:58:39.192][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-07-21 23:58:39.195][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-07-21 23:58:39.198][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-07-21 23:58:39.199][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-07-21 23:58:39.201][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-07-21 23:58:39.203][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-07-21 23:58:39.205][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-07-21 23:58:39.207][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-07-21 23:58:39.209][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-07-21 23:58:39.210][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-07-21 23:58:39.212][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-07-21 23:58:39.214][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-07-21 23:58:39.216][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-07-21 23:58:39.217][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-07-21 23:58:39.219][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-07-21 23:58:39.221][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-07-21 23:58:39.223][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-07-21 23:58:39.224][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-07-21 23:58:39.226][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-07-21 23:58:39.228][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-07-21 23:58:39.229][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-07-21 23:58:39.231][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-07-21 23:58:39.233][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-07-21 23:58:39.235][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-07-21 23:58:39.236][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-07-21 23:58:39.238][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-07-21 23:58:39.240][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-07-21 23:58:39.242][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-07-21 23:58:39.243][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-07-21 23:58:39.245][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-07-21 23:58:39.247][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-07-21 23:58:39.248][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-07-21 23:58:39.250][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-07-21 23:58:39.252][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-07-21 23:58:39.254][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-07-21 23:58:39.255][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-07-21 23:58:39.257][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-07-21 23:58:39.259][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-07-21 23:58:39.260][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-07-21 23:58:39.262][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-07-21 23:58:39.264][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-07-21 23:58:39.265][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-07-21 23:58:39.267][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-07-21 23:58:39.269][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-07-21 23:58:39.270][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-07-21 23:58:39.272][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-07-21 23:58:39.274][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-07-21 23:58:39.276][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-07-21 23:58:39.277][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-07-21 23:58:39.279][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-07-21 23:58:39.305][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-07-21 23:58:39.308][initialize] This is biodb version 1.12.0.
biodb.DEBUG[2024-07-21 23:58:39.311][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-21 23:58:39.312][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:39.313][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:39.315][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:39.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:39.321][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:39.322][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:39.323][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:39.325][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:39.326][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:39.327][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:39.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:39.329][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:39.330][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:39.332][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:39.333][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:39.334][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:39.335][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:39.337][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:39.338][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:39.339][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:39.340][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:39.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:39.342][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:39.344][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:39.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:39.346][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:39.347][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:39.348][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:39.349][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:39.351][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:39.352][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:39.353][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:39.354][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:39.355][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:39.356][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:39.358][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:39.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:39.360][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:39.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:39.363][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:39.370][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:39.371][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:39.372][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:39.373][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:39.375][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:39.376][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:39.377][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:39.378][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:39.380][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:39.381][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:39.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:39.383][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:39.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:39.386][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:39.387][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:39.388][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:39.389][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:39.391][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:39.392][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:39.393][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:39.394][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:39.396][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:39.397][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:39.398][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:39.399][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:39.401][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:39.402][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:39.403][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:39.404][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:39.406][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:39.407][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:39.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:39.409][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:39.411][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:39.412][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:39.413][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:39.414][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:39.416][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:39.417][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:39.418][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:39.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:39.421][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:39.422][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:39.423][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:39.424][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:39.426][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:39.427][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:39.428][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:39.430][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:39.431][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:39.432][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:39.433][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:39.434][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:39.436][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:39.437][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:39.438][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:39.439][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:39.441][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:39.442][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:39.443][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:39.444][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:39.446][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:39.447][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:39.448][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:39.449][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:39.451][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:39.452][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:39.453][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:39.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:39.456][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:39.457][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:39.458][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:39.459][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:39.460][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:39.462][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:39.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:39.464][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:39.465][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:39.467][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:39.468][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:39.469][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:39.470][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:39.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:39.475][biodb$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.19-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2024-07-21 23:58:39.485][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2024-07-21 23:58:39.488][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-21 23:58:39.490][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-07-21 23:58:39.491][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-21 23:58:39.492][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-21 23:58:39.494][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-21 23:58:39.495][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-21 23:58:39.496][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-07-21 23:58:39.498][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2024-07-21 23:58:39.499][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-07-21 23:58:39.500][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-21 23:58:39.502][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-21 23:58:39.503][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2024-07-21 23:58:39.505][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-21 23:58:39.506][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-07-21 23:58:39.506][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2024-07-21 23:58:39.506][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-07-21 23:58:39.506][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-07-21 23:58:39.506][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-07-21 23:58:39.506][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2024-07-21 23:58:39.506][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-07-21 23:58:39.506][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-07-21 23:58:39.506][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2024-07-21 23:58:39.506][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2024-07-21 23:58:39.506][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-07-21 23:58:39.508][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-07-21 23:58:39.509][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-21 23:58:39.509][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-21 23:58:39.509][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-21 23:58:39.510][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-07-21 23:58:39.512][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 23:58:39.513][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 23:58:39.514][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-21 23:58:39.516][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 23:58:39.517][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 23:58:39.518][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-21 23:58:39.519][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-07-21 23:58:39.519][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2024-07-21 23:58:39.521][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-21 23:58:39.522][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-21 23:58:39.523][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-07-21 23:58:39.525][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2024-07-21 23:58:39.525][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2024-07-21 23:58:39.535][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-07-21 23:58:39.538][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-21 23:58:39.542][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2024-07-21 23:58:39.545][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-07-21 23:58:39.548][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-07-21 23:58:39.551][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-07-21 23:58:39.587][super$initialize] Initialize connector chebi.
biodb.DEBUG[2024-07-21 23:58:39.590][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2024-07-21 23:58:39.596][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2024-07-21 23:58:39.603][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2024-07-21 23:58:39.609][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-21 23:58:39.611][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-21 23:58:39.614][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2024-07-21 23:58:39.617][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2024-07-21 23:58:39.632][biodb::testThat]
biodb.INFO [2024-07-21 23:58:39.634][biodb::testThat] Running test function test.entry.fields (" Entry fields have a correct value ").
biodb.INFO [2024-07-21 23:58:39.636][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-21 23:58:39.639][biodb::testThat]
biodb.TRACE[2024-07-21 23:58:39.691][loadFileContents] Loaded 1 files from cache: [1]: "E:/biocbuild/bbs-3.19-bioc/R/library/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2024-07-21 23:58:39.694][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-21 23:58:39.697][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-21 23:58:39.705][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:39.706][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:39.707][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:39.732][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:39.734][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:39.736][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:39.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:39.751][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:39.753][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:39.755][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:39.757][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:39.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:39.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:39.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:39.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:39.786][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 23:58:39.788][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 23:58:39.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:39.792][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:39.832][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 23:58:39.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 23:58:39.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:39.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:39.840][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 23:58:39.842][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 23:58:39.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:39.846][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:39.849][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 23:58:39.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 23:58:39.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:39.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:39.857][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 23:58:39.859][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 23:58:39.861][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:39.863][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:39.865][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 23:58:39.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 23:58:39.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:39.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:39.873][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 23:58:39.875][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 23:58:39.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:39.879][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:39.881][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 23:58:39.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 23:58:39.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:39.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:39.889][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:39.891][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:39.893][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:39.895][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:39.898][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:39.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:39.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:39.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:39.906][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 23:58:39.908][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:39.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:39.911][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:39.914][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 23:58:39.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:39.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:39.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:39.922][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:39.924][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:39.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:39.928][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:39.930][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:39.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:39.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:39.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:39.939][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:39.941][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:39.942][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:39.943][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:39.945][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:39.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:39.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:39.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:39.987][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 23:58:39.988][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 23:58:39.989][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:39.991][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:39.992][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 23:58:39.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 23:58:39.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:39.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:39.997][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 23:58:39.998][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 23:58:40.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.001][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.002][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 23:58:40.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 23:58:40.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.007][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:40.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:40.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.012][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:40.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:40.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:40.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:40.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.022][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:40.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:40.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:40.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:40.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:40.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:40.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:40.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:40.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:40.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:40.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:40.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:40.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:40.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:40.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:40.084][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2024-07-21 23:58:40.092][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 23:58:40.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 23:58:40.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.097][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 23:58:40.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 23:58:40.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.126][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 23:58:40.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 23:58:40.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.132][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 23:58:40.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 23:58:40.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.137][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:40.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:40.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.141][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:40.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:40.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.146][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-21 23:58:40.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-21 23:58:40.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.151][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-21 23:58:40.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-21 23:58:40.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.156][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-07-21 23:58:40.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-07-21 23:58:40.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.161][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-07-21 23:58:40.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-07-21 23:58:40.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:40.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:40.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.222][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:40.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:40.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.309][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:40.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:40.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.314][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:40.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:40.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:40.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:40.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:40.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:40.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.331][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:40.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:40.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:40.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:40.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.340][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:40.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:40.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.345][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:40.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:40.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.350][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:40.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:40.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:40.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:40.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:40.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:40.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.398][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:40.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:40.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.403][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:40.404][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:40.405][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.407][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:40.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:40.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.429][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:40.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:40.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.436][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:40.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:40.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.441][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:40.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:40.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.445][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:40.447][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:40.448][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.449][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.450][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:40.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:40.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.471][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:40.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:40.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.476][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:40.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:40.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.482][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:40.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:40.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.487][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:40.488][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:40.489][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.490][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.492][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:40.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:40.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.511][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 23:58:40.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 23:58:40.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.516][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 23:58:40.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 23:58:40.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.521][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 23:58:40.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 23:58:40.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.526][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 23:58:40.527][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 23:58:40.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.530][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.531][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 23:58:40.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 23:58:40.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.552][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:40.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:40.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.557][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:40.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:40.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.562][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:40.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:40.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.567][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:40.568][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:40.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.571][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.572][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:40.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:40.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.589][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:40.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:40.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.595][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:40.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:40.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.600][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:40.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:40.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.605][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:40.607][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:40.608][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.609][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.610][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:40.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:40.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.636][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 23:58:40.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 23:58:40.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.646][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 23:58:40.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 23:58:40.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.651][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 23:58:40.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 23:58:40.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.656][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 23:58:40.657][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 23:58:40.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.660][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.661][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 23:58:40.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 23:58:40.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.681][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-07-21 23:58:40.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 23:58:40.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.686][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-07-21 23:58:40.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 23:58:40.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.691][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-07-21 23:58:40.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 23:58:40.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.696][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-07-21 23:58:40.697][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 23:58:40.698][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.699][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.701][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-07-21 23:58:40.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 23:58:40.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.724][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:40.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:40.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.730][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:40.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:40.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.735][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:40.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:40.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.740][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:40.741][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:40.742][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.743][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.744][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:40.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:40.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.776][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 23:58:40.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 23:58:40.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.786][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 23:58:40.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 23:58:40.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.792][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 23:58:40.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 23:58:40.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.797][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 23:58:40.798][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 23:58:40.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.800][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.802][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 23:58:40.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 23:58:40.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.826][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 23:58:40.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 23:58:40.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.832][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 23:58:40.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 23:58:40.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.837][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 23:58:40.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 23:58:40.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.842][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 23:58:40.844][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 23:58:40.845][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.846][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.847][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 23:58:40.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 23:58:40.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.873][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 23:58:40.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 23:58:40.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.883][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 23:58:40.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 23:58:40.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.888][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 23:58:40.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 23:58:40.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.893][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 23:58:40.895][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 23:58:40.896][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.897][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.898][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 23:58:40.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 23:58:40.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.914][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:40.916][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:40.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.918][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.925][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 23:58:40.927][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 23:58:40.928][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.929][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.948][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 23:58:40.950][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 23:58:40.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.953][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.961][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 23:58:40.963][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 23:58:40.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.965][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.976][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 23:58:40.977][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 23:58:40.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.980][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:40.987][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:40.988][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:40.990][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:40.991][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:41.000][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:41.002][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:41.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:41.004][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:41.016][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:41.017][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:41.018][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:41.020][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:41.032][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-07-21 23:58:41.033][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 23:58:41.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:41.035][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:41.042][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:41.044][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:41.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:41.046][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:41.053][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 23:58:41.054][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 23:58:41.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:41.057][ef$get] fields variable is a list.
biodb.INFO [2024-07-21 23:58:41.075][biodb::testThat]
biodb.INFO [2024-07-21 23:58:41.077][biodb::testThat] Running test function test.rt.unit (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-07-21 23:58:41.078][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-21 23:58:41.079][biodb::testThat]
biodb.DEBUG[2024-07-21 23:58:41.092][private$loadEntries] Creating entries from ids [1]: "15440".
biodb.DEBUG[2024-07-21 23:58:41.099][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-21 23:58:41.105][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15440".
biodb.TRACE[2024-07-21 23:58:41.107][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 23:58:41.109][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15440.xml".
biodb.DEBUG[2024-07-21 23:58:41.116][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-21 23:58:41.138][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-21 23:58:41.139][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-21 23:58:41.141][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:41.142][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:41.144][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:41.160][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:41.162][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:41.163][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:41.164][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:41.167][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:41.169][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:41.171][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:41.173][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:41.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:41.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:41.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:41.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:41.205][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 23:58:41.207][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 23:58:41.209][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:41.211][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:41.213][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 23:58:41.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 23:58:41.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:41.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:41.221][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 23:58:41.223][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 23:58:41.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:41.227][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:41.229][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 23:58:41.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 23:58:41.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:41.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:41.237][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 23:58:41.239][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 23:58:41.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:41.243][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:41.245][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 23:58:41.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 23:58:41.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:41.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:41.253][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 23:58:41.255][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 23:58:41.256][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:41.258][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:41.261][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 23:58:41.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 23:58:41.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:41.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:41.268][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:41.270][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:41.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:41.274][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:41.276][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:41.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:41.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:41.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:41.284][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 23:58:41.286][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:41.288][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:41.290][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:41.292][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 23:58:41.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:41.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:41.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:41.300][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:41.302][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:41.304][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:41.306][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:41.308][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:41.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:41.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:41.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:41.316][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:41.318][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:41.326][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:41.327][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:41.329][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:41.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:41.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:41.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:41.334][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 23:58:41.335][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 23:58:41.336][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:41.338][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:41.339][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 23:58:41.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 23:58:41.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:41.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:41.346][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 23:58:41.349][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 23:58:41.351][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:41.352][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:41.355][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 23:58:41.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 23:58:41.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:41.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:41.364][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:41.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:41.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:41.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:41.369][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:41.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:41.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:41.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:41.374][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:41.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:41.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:41.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:41.379][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:41.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:41.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:41.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:41.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:41.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:41.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:41.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:41.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:41.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:41.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:41.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:41.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:41.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:41.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:41.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:41.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:41.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:41.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:41.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:41.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:41.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:41.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:41.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:41.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:41.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:41.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:41.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:41.415][self$createEntryFromContent] Accession numbers: 15440.
biodb.TRACE[2024-07-21 23:58:41.416][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-07-21 23:58:41.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-07-21 23:58:41.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:41.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:41.421][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-07-21 23:58:41.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-07-21 23:58:41.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:41.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:41.426][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-07-21 23:58:41.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-07-21 23:58:41.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:41.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-07-21 23:58:41.455][biodb::testThat]
biodb.INFO [2024-07-21 23:58:41.456][biodb::testThat] Running test function test.searchForEntries (" We can search for an entry by searchable field ").
biodb.INFO [2024-07-21 23:58:41.458][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-21 23:58:41.459][biodb::testThat]
biodb.TRACE[2024-07-21 23:58:41.463][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:41.464][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:41.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:41.466][ef$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:41.468][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
biodb.TRACE[2024-07-21 23:58:41.498][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:41.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:41.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:41.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:41.503][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:41.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:41.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:41.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:41.508][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:41.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:41.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:41.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:41.521][function(conn, opt)] With value "squalene".
biodb.DEBUG[2024-07-21 23:58:41.526][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2024-07-21 23:58:41.545][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 23:58:41.560][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2024-07-21 23:58:41.562][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 23:58:41.564][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2024-07-21 23:58:41.586][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-21 23:58:41.591][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 23:58:41.593][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-07-21 23:58:41.595][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 23:58:41.609][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-07-21 23:58:41.612][function(conn, opt)] With found IDs [1]: "15440".
biodb.TRACE[2024-07-21 23:58:41.654][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:41.656][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:41.657][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:41.658][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:41.660][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:41.661][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:41.662][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:41.663][ef$get] fields variable is a list.
biodb.INFO [2024-07-21 23:58:41.673][biodb::testThat]
biodb.INFO [2024-07-21 23:58:41.675][biodb::testThat] Running test function test.searchByName (" We can search for an entry by name. ").
biodb.INFO [2024-07-21 23:58:41.676][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-21 23:58:41.677][biodb::testThat]
biodb.TRACE[2024-07-21 23:58:41.715][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:41.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:41.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:41.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:41.720][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:41.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:41.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:41.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:41.725][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:41.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:41.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:41.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:41.796][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-21 23:58:41.800][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 23:58:41.802][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-07-21 23:58:41.804][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 23:58:41.806][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.INFO [2024-07-21 23:58:41.843][biodb::testThat]
biodb.INFO [2024-07-21 23:58:41.845][biodb::testThat] Running test function testEntryLoading (" We can load an entry from the database. ").
biodb.INFO [2024-07-21 23:58:41.846][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-21 23:58:41.847][biodb::testThat]
biodb.TRACE[2024-07-21 23:58:41.882][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 23:58:41.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 23:58:41.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:41.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:41.888][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 23:58:41.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 23:58:41.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:41.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:41.893][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 23:58:41.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 23:58:41.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:41.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:41.900][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 23:58:41.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 23:58:41.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:41.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:41.906][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:41.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:41.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:41.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:41.911][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:41.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:41.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:41.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:41.916][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-21 23:58:41.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-21 23:58:41.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:41.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:41.921][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-21 23:58:41.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-21 23:58:41.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:41.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:41.927][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-07-21 23:58:41.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-07-21 23:58:41.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:41.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:41.932][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-07-21 23:58:41.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-07-21 23:58:41.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:41.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:41.953][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 23:58:41.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 23:58:41.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:41.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:41.959][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 23:58:41.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 23:58:41.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:41.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:41.964][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 23:58:41.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 23:58:41.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:41.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:41.969][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 23:58:41.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 23:58:41.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:41.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:41.974][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:41.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:41.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:41.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:41.979][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:41.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:41.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:41.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:41.984][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-21 23:58:41.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-21 23:58:41.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:41.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:41.989][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-21 23:58:41.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-21 23:58:41.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:41.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:41.994][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-07-21 23:58:41.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-07-21 23:58:41.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:41.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:42.000][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-07-21 23:58:42.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-07-21 23:58:42.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:42.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-07-21 23:58:42.014][biodb::testThat]
biodb.INFO [2024-07-21 23:58:42.015][biodb::testThat] Running test function test.entry.page.url (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-07-21 23:58:42.016][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-21 23:58:42.018][biodb::testThat]
biodb.INFO [2024-07-21 23:58:42.030][biodb::testThat]
biodb.INFO [2024-07-21 23:58:42.031][biodb::testThat] Running test function test.entry.image.url (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-07-21 23:58:42.033][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-21 23:58:42.034][biodb::testThat]
biodb.INFO [2024-07-21 23:58:42.055][biodb::testThat]
biodb.INFO [2024-07-21 23:58:42.057][biodb::testThat] Running test function test.entry.page.url.download (" The entry page URL can be downloaded. ").
biodb.INFO [2024-07-21 23:58:42.058][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-21 23:58:42.059][biodb::testThat]
biodb.DEBUG[2024-07-21 23:58:42.064][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
biodb.DEBUG[2024-07-21 23:58:42.735][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440.
biodb.INFO [2024-07-21 23:58:43.602][biodb::testThat]
biodb.INFO [2024-07-21 23:58:43.604][biodb::testThat] Running test function test.entry.image.url.download (" The entry image URL can be downloaded. ").
biodb.INFO [2024-07-21 23:58:43.605][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-21 23:58:43.607][biodb::testThat]
biodb.DEBUG[2024-07-21 23:58:43.998][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/displayImage.do?defaultImage=true&imageIndex=0&chebiId=15440&dimensions=400.
biodb.TRACE[2024-07-21 23:58:44.557][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:44.558][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:44.560][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:44.561][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:44.563][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:44.564][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:44.565][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:44.567][ef$get] fields variable is a list.
biodb.INFO [2024-07-21 23:58:44.570][biodb::testThat]
biodb.INFO [2024-07-21 23:58:44.571][biodb::testThat] Running test function test.searchCompound (" We can search for a compound ").
biodb.INFO [2024-07-21 23:58:44.572][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-21 23:58:44.573][biodb::testThat]
biodb.TRACE[2024-07-21 23:58:44.596][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:44.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:44.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:44.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:44.602][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:44.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:44.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:44.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:44.608][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:44.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:44.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:44.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:44.719][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-21 23:58:44.723][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 23:58:44.725][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-07-21 23:58:44.727][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 23:58:44.729][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-07-21 23:58:44.810][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-21 23:58:44.816][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 23:58:44.818][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-07-21 23:58:44.820][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 23:58:44.823][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.TRACE[2024-07-21 23:58:44.854][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-21 23:58:44.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-21 23:58:44.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:44.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:44.867][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:44.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:44.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:44.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:44.873][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:44.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:44.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:44.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:44.881][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:44.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:44.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:44.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:44.887][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:44.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:44.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:44.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:44.892][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:44.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:44.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:44.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:44.906][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-21 23:58:44.912][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 23:58:44.914][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-07-21 23:58:44.916][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 23:58:44.956][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-07-21 23:58:44.959][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:44.961][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:44.962][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:44.975][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:44.976][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:44.977][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:44.978][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:44.980][private$loadEntries] Creating entries from ids [1]: "192288".
biodb.DEBUG[2024-07-21 23:58:45.030][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-21 23:58:45.032][cch$loadFileContent] Trying to load 1 files from cache: [1]: "192288".
biodb.TRACE[2024-07-21 23:58:45.035][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 23:58:45.054][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/192288.xml".
biodb.DEBUG[2024-07-21 23:58:45.056][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-21 23:58:45.057][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-21 23:58:45.059][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-21 23:58:45.061][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:45.062][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:45.063][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:45.076][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:45.077][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:45.078][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:45.079][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:45.082][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:45.083][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:45.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.086][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.087][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:45.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:45.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.092][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 23:58:45.094][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 23:58:45.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.096][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.098][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 23:58:45.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 23:58:45.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.103][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 23:58:45.104][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 23:58:45.106][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.108][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.110][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 23:58:45.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 23:58:45.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.115][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 23:58:45.116][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 23:58:45.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.118][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.120][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 23:58:45.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 23:58:45.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.131][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 23:58:45.133][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 23:58:45.134][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.135][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.136][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 23:58:45.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 23:58:45.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.142][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:45.143][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:45.144][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.145][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.147][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 23:58:45.148][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:45.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.151][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.152][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 23:58:45.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:45.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.157][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:45.159][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:45.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.161][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.163][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:45.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:45.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.169][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:45.171][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:45.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.173][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.175][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:45.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:45.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.180][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 23:58:45.181][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 23:58:45.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.184][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.185][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 23:58:45.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 23:58:45.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.190][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 23:58:45.192][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 23:58:45.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.194][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.196][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 23:58:45.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 23:58:45.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:45.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:45.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:45.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:45.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:45.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:45.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.216][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:45.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:45.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:45.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:45.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:45.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:45.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:45.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:45.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:45.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:45.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:45.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:45.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:45.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:45.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:45.256][self$createEntryFromContent] Accession numbers: 192288.
biodb.TRACE[2024-07-21 23:58:45.266][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:45.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:45.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.273][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:45.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:45.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.278][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:45.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:45.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:45.284][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-21 23:58:45.289][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 23:58:45.291][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-07-21 23:58:45.292][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 23:58:45.304][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-07-21 23:58:45.318][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:45.320][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:45.321][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:45.333][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:45.335][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:45.336][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:45.338][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:45.339][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:45.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:45.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.346][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:45.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:45.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.353][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:45.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:45.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:45.359][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:45.360][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:45.365][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:45.373][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:45.374][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:45.375][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:45.376][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:45.378][private$loadEntries] Creating entries from ids [1]: "209892".
biodb.DEBUG[2024-07-21 23:58:45.379][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-21 23:58:45.382][cch$loadFileContent] Trying to load 1 files from cache: [1]: "209892".
biodb.TRACE[2024-07-21 23:58:45.384][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 23:58:45.401][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/209892.xml".
biodb.DEBUG[2024-07-21 23:58:45.403][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-21 23:58:45.405][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-21 23:58:45.406][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-21 23:58:45.408][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:45.409][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:45.410][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:45.418][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:45.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:45.420][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:45.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:45.424][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:45.426][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:45.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.428][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:45.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:45.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.435][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 23:58:45.436][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 23:58:45.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.438][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.440][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 23:58:45.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 23:58:45.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.445][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 23:58:45.446][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 23:58:45.448][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.449][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.450][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 23:58:45.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 23:58:45.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.456][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 23:58:45.457][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 23:58:45.458][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.459][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.461][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 23:58:45.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 23:58:45.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.466][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 23:58:45.467][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 23:58:45.469][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.470][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.472][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 23:58:45.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 23:58:45.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.477][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:45.478][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:45.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.480][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.482][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 23:58:45.483][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:45.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.486][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.487][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 23:58:45.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:45.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.492][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:45.493][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:45.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.496][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.497][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:45.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:45.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.502][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:45.504][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:45.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.506][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.508][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:45.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:45.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.513][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 23:58:45.514][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 23:58:45.516][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.517][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.519][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 23:58:45.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 23:58:45.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.530][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 23:58:45.531][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 23:58:45.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.534][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.536][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 23:58:45.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 23:58:45.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.541][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:45.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:45.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.546][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:45.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:45.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:45.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:45.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.556][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:45.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:45.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.561][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:45.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:45.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:45.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:45.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:45.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:45.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:45.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:45.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.582][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:45.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:45.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:45.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:45.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:45.592][self$createEntryFromContent] Accession numbers: 209892.
biodb.TRACE[2024-07-21 23:58:45.593][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:45.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:45.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.598][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:45.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:45.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.603][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:45.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:45.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:45.665][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-21 23:58:45.671][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 23:58:45.674][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-07-21 23:58:45.676][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 23:58:45.678][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-07-21 23:58:45.682][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:45.689][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:45.690][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:45.701][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:45.702][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:45.704][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:45.705][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:45.707][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:45.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:45.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.715][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:45.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:45.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.722][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:45.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:45.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:45.727][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:45.728][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:45.729][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:45.754][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:45.756][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:45.757][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:45.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:45.759][private$loadEntries] Creating entries from ids [1]: "26747".
biodb.DEBUG[2024-07-21 23:58:45.761][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-21 23:58:45.763][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26747".
biodb.TRACE[2024-07-21 23:58:45.765][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 23:58:45.782][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26747.xml".
biodb.DEBUG[2024-07-21 23:58:45.784][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-21 23:58:45.785][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-21 23:58:45.787][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-21 23:58:45.789][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:45.790][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:45.791][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:45.806][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:45.808][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:45.810][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:45.812][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:45.815][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:45.817][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:45.818][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.819][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.821][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:45.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:45.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.826][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 23:58:45.827][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 23:58:45.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.829][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.831][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 23:58:45.832][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 23:58:45.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.836][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.839][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 23:58:45.841][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 23:58:45.843][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.845][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.847][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 23:58:45.848][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 23:58:45.850][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.851][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.852][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:45.854][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:45.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.856][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.858][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 23:58:45.859][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:45.861][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.862][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.864][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:45.865][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:45.866][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.867][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.869][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:45.876][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:45.878][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.881][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.883][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:45.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:45.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.892][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 23:58:45.894][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 23:58:45.896][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.898][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.900][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 23:58:45.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 23:58:45.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.909][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 23:58:45.911][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 23:58:45.913][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.915][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.917][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:45.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:45.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.925][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:45.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:45.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.934][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:45.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:45.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.942][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:45.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:45.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.950][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:45.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:45.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:45.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:45.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:45.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:45.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:45.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:45.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:45.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:45.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:45.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:45.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:45.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:45.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:45.999][self$createEntryFromContent] Accession numbers: 26747.
biodb.TRACE[2024-07-21 23:58:46.001][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:46.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:46.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.009][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:46.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:46.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.017][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:46.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:46.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.022][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:46.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:46.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.027][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:46.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:46.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:46.033][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:46.034][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:46.035][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:46.042][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:46.043][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:46.044][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:46.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:46.072][private$loadEntries] Creating entries from ids [1]: "59285".
biodb.DEBUG[2024-07-21 23:58:46.074][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-21 23:58:46.076][cch$loadFileContent] Trying to load 1 files from cache: [1]: "59285".
biodb.TRACE[2024-07-21 23:58:46.078][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 23:58:46.095][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/59285.xml".
biodb.DEBUG[2024-07-21 23:58:46.097][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-21 23:58:46.100][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-21 23:58:46.103][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-21 23:58:46.106][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:46.108][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:46.110][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:46.129][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:46.131][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:46.132][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:46.134][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:46.136][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:46.138][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:46.139][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.140][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:46.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:46.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.147][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 23:58:46.148][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 23:58:46.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.151][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.153][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 23:58:46.155][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 23:58:46.156][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.157][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.159][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 23:58:46.160][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 23:58:46.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.162][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.164][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 23:58:46.165][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 23:58:46.166][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.168][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.169][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:46.171][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:46.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.173][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.175][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 23:58:46.176][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:46.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.178][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.180][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:46.181][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:46.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.184][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.185][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:46.187][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:46.188][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.189][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.191][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:46.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:46.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.196][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 23:58:46.198][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 23:58:46.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.200][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.202][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 23:58:46.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 23:58:46.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.207][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 23:58:46.208][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 23:58:46.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.211][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.212][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:46.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:46.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.220][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:46.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:46.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:46.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:46.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.232][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:46.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:46.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.249][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:46.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:46.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:46.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:46.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:46.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:46.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:46.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:46.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.284][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:46.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:46.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:46.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:46.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:46.301][self$createEntryFromContent] Accession numbers: 59285.
biodb.TRACE[2024-07-21 23:58:46.303][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:46.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:46.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.312][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:46.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:46.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.320][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:46.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:46.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.329][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:46.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:46.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.338][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:46.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:46.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:46.346][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:46.348][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:46.350][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:46.380][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:46.381][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:46.382][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:46.384][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:46.385][private$loadEntries] Creating entries from ids [1]: "75174".
biodb.DEBUG[2024-07-21 23:58:46.386][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-21 23:58:46.388][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75174".
biodb.TRACE[2024-07-21 23:58:46.390][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 23:58:46.439][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75174.xml".
biodb.DEBUG[2024-07-21 23:58:46.441][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-21 23:58:46.442][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-21 23:58:46.444][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-21 23:58:46.446][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:46.447][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:46.448][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:46.455][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:46.456][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:46.457][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:46.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:46.461][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:46.462][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:46.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.465][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.466][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:46.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:46.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.472][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 23:58:46.474][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 23:58:46.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.476][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.477][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 23:58:46.479][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 23:58:46.485][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.487][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.489][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 23:58:46.490][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 23:58:46.491][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.492][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.494][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 23:58:46.495][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 23:58:46.496][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.497][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.499][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:46.500][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:46.501][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.502][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.504][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 23:58:46.505][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:46.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.507][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.509][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:46.510][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:46.511][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.513][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.514][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:46.515][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:46.516][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.518][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.520][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:46.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:46.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.525][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 23:58:46.526][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 23:58:46.527][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.528][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.530][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 23:58:46.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 23:58:46.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.535][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 23:58:46.536][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 23:58:46.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.538][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.540][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:46.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:46.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.545][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:46.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:46.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:46.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:46.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.555][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:46.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:46.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:46.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:46.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:46.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:46.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.570][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:46.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:46.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:46.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:46.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:46.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:46.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.586][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:46.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:46.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:46.591][self$createEntryFromContent] Accession numbers: 75174.
biodb.TRACE[2024-07-21 23:58:46.592][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:46.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:46.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.597][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:46.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:46.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.607][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:46.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:46.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.612][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:46.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:46.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.617][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:46.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:46.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:46.622][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:46.623][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:46.624][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:46.641][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:46.643][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:46.645][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:46.647][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:46.649][private$loadEntries] Creating entries from ids [1]: "15441".
biodb.DEBUG[2024-07-21 23:58:46.651][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-21 23:58:46.654][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15441".
biodb.TRACE[2024-07-21 23:58:46.657][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 23:58:46.730][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15441.xml".
biodb.DEBUG[2024-07-21 23:58:46.731][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-21 23:58:46.733][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-21 23:58:46.734][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-21 23:58:46.736][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:46.737][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:46.738][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:46.755][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:46.756][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:46.757][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:46.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:46.761][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:46.762][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:46.763][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.765][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:46.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:46.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.771][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 23:58:46.772][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 23:58:46.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.775][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.776][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 23:58:46.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 23:58:46.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.781][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 23:58:46.783][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 23:58:46.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.785][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.787][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 23:58:46.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 23:58:46.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.792][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 23:58:46.793][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 23:58:46.794][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.795][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.797][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 23:58:46.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 23:58:46.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.802][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 23:58:46.803][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 23:58:46.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.805][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.807][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 23:58:46.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 23:58:46.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.812][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:46.813][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:46.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.816][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.817][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:46.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:46.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.828][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 23:58:46.829][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:46.831][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.832][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.833][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 23:58:46.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:46.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.838][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:46.840][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:46.841][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.842][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.844][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:46.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:46.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.849][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:46.850][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:46.851][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.852][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.854][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:46.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:46.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.859][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 23:58:46.861][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 23:58:46.862][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.863][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.865][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 23:58:46.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 23:58:46.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.870][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 23:58:46.871][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 23:58:46.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.873][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.875][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 23:58:46.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 23:58:46.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.880][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:46.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:46.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.885][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:46.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:46.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.890][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:46.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:46.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.895][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:46.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:46.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:46.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:46.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:46.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:46.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.909][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:46.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:46.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:46.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:46.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:46.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:46.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:46.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:46.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:46.929][self$createEntryFromContent] Accession numbers: 15441.
biodb.TRACE[2024-07-21 23:58:46.930][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:46.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:46.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.935][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:46.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:46.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:46.940][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:46.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:46.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:46.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:46.951][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:46.952][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:46.954][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:46.973][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:46.975][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:46.976][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:46.977][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:46.979][private$loadEntries] Creating entries from ids [1]: "15442".
biodb.DEBUG[2024-07-21 23:58:46.980][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-21 23:58:46.982][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15442".
biodb.TRACE[2024-07-21 23:58:46.983][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 23:58:47.044][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15442.xml".
biodb.DEBUG[2024-07-21 23:58:47.046][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-21 23:58:47.048][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-21 23:58:47.049][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-21 23:58:47.051][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:47.052][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:47.053][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:47.125][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:47.126][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:47.128][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:47.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:47.134][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:47.137][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:47.139][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.140][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:47.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:47.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.151][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 23:58:47.153][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 23:58:47.155][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.156][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.157][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 23:58:47.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 23:58:47.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.162][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 23:58:47.163][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 23:58:47.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.166][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.168][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 23:58:47.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 23:58:47.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.172][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 23:58:47.174][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 23:58:47.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.176][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.178][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 23:58:47.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 23:58:47.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.183][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 23:58:47.184][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 23:58:47.185][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.186][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.188][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 23:58:47.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 23:58:47.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.193][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:47.194][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:47.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.196][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.198][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:47.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:47.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.204][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 23:58:47.206][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:47.208][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.210][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.212][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 23:58:47.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:47.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.217][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:47.224][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:47.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.227][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.229][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:47.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:47.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.237][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:47.239][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:47.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.243][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.245][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:47.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:47.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.250][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 23:58:47.251][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 23:58:47.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.254][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.255][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 23:58:47.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 23:58:47.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.260][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 23:58:47.261][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 23:58:47.263][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.264][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.265][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 23:58:47.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 23:58:47.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.271][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:47.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:47.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.275][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:47.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:47.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:47.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:47.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.285][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:47.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:47.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:47.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:47.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:47.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:47.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:47.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:47.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.305][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:47.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:47.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:47.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:47.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:47.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:47.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:47.319][self$createEntryFromContent] Accession numbers: 15442.
biodb.TRACE[2024-07-21 23:58:47.321][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:47.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:47.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.326][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:47.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:47.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.331][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:47.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:47.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:47.335][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:47.336][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:47.338][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:47.350][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:47.351][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:47.352][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:47.354][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:47.355][private$loadEntries] Creating entries from ids [1]: "57310".
biodb.DEBUG[2024-07-21 23:58:47.357][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-21 23:58:47.358][cch$loadFileContent] Trying to load 1 files from cache: [1]: "57310".
biodb.TRACE[2024-07-21 23:58:47.361][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 23:58:47.374][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/57310.xml".
biodb.DEBUG[2024-07-21 23:58:47.376][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-21 23:58:47.377][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-21 23:58:47.379][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-21 23:58:47.381][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:47.382][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:47.383][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:47.396][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:47.398][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:47.399][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:47.400][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:47.402][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:47.404][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:47.405][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.406][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:47.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:47.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.413][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 23:58:47.414][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 23:58:47.415][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.416][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.418][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 23:58:47.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 23:58:47.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.423][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 23:58:47.424][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 23:58:47.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.427][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.428][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 23:58:47.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 23:58:47.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.433][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 23:58:47.435][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 23:58:47.436][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.437][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.438][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 23:58:47.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 23:58:47.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.443][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 23:58:47.444][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 23:58:47.446][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.447][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.448][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 23:58:47.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 23:58:47.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.453][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:47.454][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:47.456][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.457][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.458][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 23:58:47.460][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:47.461][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.462][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.463][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 23:58:47.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:47.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.469][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:47.470][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:47.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.472][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.474][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:47.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:47.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.479][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:47.480][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:47.482][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.483][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.484][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:47.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:47.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.495][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 23:58:47.497][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 23:58:47.498][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.499][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.500][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 23:58:47.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 23:58:47.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.506][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 23:58:47.507][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 23:58:47.508][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.509][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.511][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 23:58:47.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 23:58:47.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.516][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:47.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:47.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.521][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:47.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:47.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:47.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:47.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.531][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:47.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:47.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:47.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:47.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:47.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:47.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.547][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:47.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:47.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.552][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:47.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:47.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:47.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:47.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:47.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:47.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:47.568][self$createEntryFromContent] Accession numbers: 57310.
biodb.TRACE[2024-07-21 23:58:47.569][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:47.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:47.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.574][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:47.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:47.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.579][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:47.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:47.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:47.585][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:47.586][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:47.587][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:47.690][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:47.692][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:47.693][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:47.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:47.695][private$loadEntries] Creating entries from ids [1]: "66216".
biodb.DEBUG[2024-07-21 23:58:47.697][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-21 23:58:47.699][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66216".
biodb.TRACE[2024-07-21 23:58:47.701][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 23:58:47.715][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66216.xml".
biodb.DEBUG[2024-07-21 23:58:47.717][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-21 23:58:47.718][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-21 23:58:47.720][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-21 23:58:47.728][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:47.730][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:47.731][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:47.747][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:47.749][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:47.750][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:47.751][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:47.754][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:47.756][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:47.757][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.758][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:47.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:47.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.765][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 23:58:47.767][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 23:58:47.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.769][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.771][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 23:58:47.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 23:58:47.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.776][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 23:58:47.777][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 23:58:47.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.780][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.781][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 23:58:47.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 23:58:47.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.787][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 23:58:47.788][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 23:58:47.789][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.790][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.792][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 23:58:47.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 23:58:47.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.797][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 23:58:47.798][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 23:58:47.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.801][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.802][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 23:58:47.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 23:58:47.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.808][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:47.809][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:47.810][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.812][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.813][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 23:58:47.815][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:47.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.817][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.819][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 23:58:47.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:47.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.824][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:47.825][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:47.827][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.828][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.829][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:47.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:47.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.835][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:47.836][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:47.837][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.839][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.840][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:47.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:47.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.846][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 23:58:47.847][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 23:58:47.848][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.850][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.851][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 23:58:47.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 23:58:47.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.856][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 23:58:47.858][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 23:58:47.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.866][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.868][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 23:58:47.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 23:58:47.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.874][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:47.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:47.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.879][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:47.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:47.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.886][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:47.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:47.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.891][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:47.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:47.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:47.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:47.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.902][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:47.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:47.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:47.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:47.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:47.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:47.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:47.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:47.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:47.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:47.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:47.930][self$createEntryFromContent] Accession numbers: 66216.
biodb.TRACE[2024-07-21 23:58:47.932][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:47.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:47.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.937][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:47.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:47.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:47.943][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:47.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:47.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:47.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:47.948][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:47.949][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:47.950][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:47.958][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:47.959][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:47.961][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:47.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:47.963][private$loadEntries] Creating entries from ids [1]: "70860".
biodb.DEBUG[2024-07-21 23:58:47.965][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-21 23:58:47.967][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70860".
biodb.TRACE[2024-07-21 23:58:47.969][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 23:58:47.982][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70860.xml".
biodb.DEBUG[2024-07-21 23:58:47.983][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-21 23:58:47.985][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-21 23:58:47.987][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-21 23:58:47.988][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:47.989][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:47.991][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:47.998][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:47.999][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:48.000][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:48.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:48.004][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:48.011][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:48.012][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.014][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:48.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:48.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.022][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 23:58:48.023][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 23:58:48.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.026][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.028][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 23:58:48.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 23:58:48.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.033][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 23:58:48.034][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 23:58:48.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.037][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.038][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 23:58:48.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 23:58:48.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.044][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 23:58:48.045][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 23:58:48.046][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.047][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.049][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 23:58:48.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 23:58:48.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.057][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 23:58:48.059][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 23:58:48.061][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.063][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.065][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 23:58:48.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 23:58:48.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.070][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:48.072][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:48.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.074][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.076][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 23:58:48.077][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:48.078][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.080][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.082][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 23:58:48.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:48.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.090][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:48.091][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:48.092][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.093][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.095][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:48.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:48.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.100][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:48.102][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:48.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.104][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.106][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:48.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:48.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.111][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 23:58:48.112][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 23:58:48.113][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.115][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.116][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 23:58:48.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 23:58:48.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.121][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 23:58:48.123][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 23:58:48.124][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.125][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.127][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 23:58:48.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 23:58:48.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.132][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:48.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:48.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.137][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:48.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:48.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:48.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:48.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.153][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:48.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:48.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:48.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:48.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:48.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:48.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:48.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:48.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:48.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:48.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:48.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:48.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.184][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:48.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:48.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:48.189][self$createEntryFromContent] Accession numbers: 70860.
biodb.TRACE[2024-07-21 23:58:48.191][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:48.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:48.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.196][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:48.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:48.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.201][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:48.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:48.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:48.206][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:48.207][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:48.208][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:48.220][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:48.221][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:48.222][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:48.223][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:48.225][private$loadEntries] Creating entries from ids [1]: "70861".
biodb.DEBUG[2024-07-21 23:58:48.226][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-21 23:58:48.228][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70861".
biodb.TRACE[2024-07-21 23:58:48.230][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 23:58:48.244][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70861.xml".
biodb.DEBUG[2024-07-21 23:58:48.245][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-21 23:58:48.247][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-21 23:58:48.249][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-21 23:58:48.251][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:48.252][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:48.253][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:48.263][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:48.264][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:48.265][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:48.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:48.269][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:48.271][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:48.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.273][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:48.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:48.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.280][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 23:58:48.281][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 23:58:48.283][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.284][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.286][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 23:58:48.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 23:58:48.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.297][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 23:58:48.299][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 23:58:48.300][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.301][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.303][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 23:58:48.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 23:58:48.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.308][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 23:58:48.309][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 23:58:48.311][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.312][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.313][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 23:58:48.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 23:58:48.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.319][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 23:58:48.320][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 23:58:48.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.323][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.324][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 23:58:48.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 23:58:48.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.330][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:48.331][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:48.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.334][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.335][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 23:58:48.337][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:48.338][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.339][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.341][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 23:58:48.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:48.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.346][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:48.347][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:48.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.350][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.352][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:48.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:48.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.357][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:48.358][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:48.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.361][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.362][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:48.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:48.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.368][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 23:58:48.369][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 23:58:48.370][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.372][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.373][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 23:58:48.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 23:58:48.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.379][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 23:58:48.380][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 23:58:48.381][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.383][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.384][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 23:58:48.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 23:58:48.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.390][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:48.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:48.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.395][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:48.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:48.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.400][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:48.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:48.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.406][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:48.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:48.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:48.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:48.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.422][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:48.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:48.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:48.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:48.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.433][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:48.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:48.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:48.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:48.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:48.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:48.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:48.449][self$createEntryFromContent] Accession numbers: 70861.
biodb.TRACE[2024-07-21 23:58:48.450][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:48.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:48.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.456][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:48.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:48.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.461][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:48.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:48.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:48.466][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:48.467][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:48.468][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:48.516][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:48.517][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:48.519][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:48.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:48.521][private$loadEntries] Creating entries from ids [1]: "78662".
biodb.DEBUG[2024-07-21 23:58:48.523][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-21 23:58:48.525][cch$loadFileContent] Trying to load 1 files from cache: [1]: "78662".
biodb.TRACE[2024-07-21 23:58:48.527][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 23:58:48.539][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78662.xml".
biodb.DEBUG[2024-07-21 23:58:48.541][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-21 23:58:48.542][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-21 23:58:48.544][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-21 23:58:48.546][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:48.547][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:48.548][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:48.556][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:48.557][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:48.559][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:48.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:48.563][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:48.564][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:48.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.567][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.568][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:48.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:48.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.574][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 23:58:48.575][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 23:58:48.577][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.578][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.580][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 23:58:48.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 23:58:48.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.585][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 23:58:48.587][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 23:58:48.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.589][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.591][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 23:58:48.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 23:58:48.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.596][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 23:58:48.604][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 23:58:48.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.607][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.609][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 23:58:48.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 23:58:48.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.615][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 23:58:48.616][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 23:58:48.617][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.619][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.620][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 23:58:48.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 23:58:48.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.626][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:48.627][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:48.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.630][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.632][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 23:58:48.633][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:48.634][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.635][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.637][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 23:58:48.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:48.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.642][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:48.644][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:48.645][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.646][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.648][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:48.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:48.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.653][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:48.655][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:48.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.657][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.659][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:48.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:48.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.664][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 23:58:48.666][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 23:58:48.667][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.668][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.670][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 23:58:48.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 23:58:48.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.675][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 23:58:48.677][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 23:58:48.678][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.679][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.681][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 23:58:48.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 23:58:48.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.686][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:48.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:48.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.691][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:48.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:48.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:48.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:48.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.702][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:48.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:48.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:48.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:48.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:48.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:48.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:48.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:48.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:48.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:48.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:48.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:48.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:48.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:48.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:48.744][self$createEntryFromContent] Accession numbers: 78662.
biodb.TRACE[2024-07-21 23:58:48.746][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:48.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:48.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.751][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:48.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:48.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.757][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:48.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:48.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:48.762][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:48.763][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:48.764][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:48.786][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:48.788][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:48.789][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:48.790][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:48.792][private$loadEntries] Creating entries from ids [1]: "85084".
biodb.DEBUG[2024-07-21 23:58:48.793][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-21 23:58:48.795][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85084".
biodb.TRACE[2024-07-21 23:58:48.797][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 23:58:48.811][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85084.xml".
biodb.DEBUG[2024-07-21 23:58:48.813][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-21 23:58:48.814][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-21 23:58:48.816][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-21 23:58:48.818][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:48.819][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:48.820][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:48.834][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:48.836][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:48.837][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:48.838][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:48.841][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:48.843][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:48.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.845][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:48.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:48.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.852][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 23:58:48.854][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 23:58:48.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.856][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.858][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 23:58:48.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 23:58:48.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.863][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 23:58:48.865][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 23:58:48.866][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.867][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.869][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 23:58:48.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 23:58:48.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.874][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 23:58:48.876][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 23:58:48.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.878][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.880][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 23:58:48.881][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 23:58:48.882][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.884][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.885][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:48.887][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:48.888][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.894][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.896][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 23:58:48.898][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:48.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.901][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.902][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 23:58:48.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:48.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.908][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:48.909][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:48.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.912][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.914][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:48.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:48.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.919][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:48.920][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:48.922][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.923][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.925][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:48.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:48.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.930][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 23:58:48.932][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 23:58:48.933][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.934][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.936][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 23:58:48.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 23:58:48.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.941][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 23:58:48.943][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 23:58:48.944][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.945][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.947][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:48.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:48.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.952][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:48.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:48.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:48.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:48.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.963][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:48.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:48.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.968][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:48.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:48.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:48.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:48.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:48.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:48.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:48.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:48.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.990][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:48.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:48.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:48.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:48.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:48.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:48.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:49.000][self$createEntryFromContent] Accession numbers: 85084.
biodb.TRACE[2024-07-21 23:58:49.002][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:49.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:49.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.007][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:49.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:49.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.012][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:49.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:49.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:49.023][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:49.024][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:49.025][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:49.043][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:49.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:49.046][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:49.047][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:49.049][private$loadEntries] Creating entries from ids [1]: "85086".
biodb.DEBUG[2024-07-21 23:58:49.050][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-21 23:58:49.052][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85086".
biodb.TRACE[2024-07-21 23:58:49.054][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 23:58:49.067][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85086.xml".
biodb.DEBUG[2024-07-21 23:58:49.069][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-21 23:58:49.071][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-21 23:58:49.072][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-21 23:58:49.074][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:49.075][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:49.077][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:49.088][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:49.089][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:49.090][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:49.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:49.094][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:49.096][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:49.097][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.098][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:49.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:49.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.105][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 23:58:49.106][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 23:58:49.108][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.109][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.111][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 23:58:49.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 23:58:49.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.116][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 23:58:49.117][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 23:58:49.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.120][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.121][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 23:58:49.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 23:58:49.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.126][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 23:58:49.128][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 23:58:49.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.130][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.132][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 23:58:49.133][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 23:58:49.135][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.136][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.137][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:49.139][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:49.140][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.141][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.143][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 23:58:49.144][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:49.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.147][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.148][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 23:58:49.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:49.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.154][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:49.155][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:49.156][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.157][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.159][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:49.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:49.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.164][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:49.166][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:49.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.168][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.170][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:49.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:49.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.182][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 23:58:49.183][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 23:58:49.185][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.186][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.187][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 23:58:49.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 23:58:49.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.193][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 23:58:49.194][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 23:58:49.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.196][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.198][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:49.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:49.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.203][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:49.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:49.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.209][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:49.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:49.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.214][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:49.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:49.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:49.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:49.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:49.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:49.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:49.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:49.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:49.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:49.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.240][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:49.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:49.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:49.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:49.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:49.250][self$createEntryFromContent] Accession numbers: 85086.
biodb.TRACE[2024-07-21 23:58:49.251][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:49.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:49.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.257][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:49.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:49.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.262][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:49.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:49.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:49.267][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:49.268][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:49.269][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:49.281][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:49.282][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:49.283][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:49.285][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:49.286][private$loadEntries] Creating entries from ids [1]: "88123".
biodb.DEBUG[2024-07-21 23:58:49.287][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-21 23:58:49.289][cch$loadFileContent] Trying to load 1 files from cache: [1]: "88123".
biodb.TRACE[2024-07-21 23:58:49.291][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 23:58:49.305][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88123.xml".
biodb.DEBUG[2024-07-21 23:58:49.306][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-21 23:58:49.308][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-21 23:58:49.309][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-21 23:58:49.311][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:49.313][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:49.319][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:49.333][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:49.334][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:49.336][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:49.337][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:49.339][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:49.341][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:49.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.343][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.345][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:49.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:49.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.350][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 23:58:49.352][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 23:58:49.353][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.354][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.356][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 23:58:49.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 23:58:49.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.361][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 23:58:49.362][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 23:58:49.364][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.365][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.367][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 23:58:49.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 23:58:49.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.372][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 23:58:49.373][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 23:58:49.375][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.376][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.377][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 23:58:49.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 23:58:49.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.383][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 23:58:49.384][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 23:58:49.385][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.387][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.388][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 23:58:49.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 23:58:49.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.394][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:49.395][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:49.396][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.397][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.399][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 23:58:49.400][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:49.402][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.403][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.404][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 23:58:49.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:49.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.410][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:49.411][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:49.412][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.414][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.415][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:49.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:49.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.421][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:49.424][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:49.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.428][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.431][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:49.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:49.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.439][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 23:58:49.441][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 23:58:49.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.444][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.446][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 23:58:49.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 23:58:49.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.451][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 23:58:49.453][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 23:58:49.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.463][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.465][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 23:58:49.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 23:58:49.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.471][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:49.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:49.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.476][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:49.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:49.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:49.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:49.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.487][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:49.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:49.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.492][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:49.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:49.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:49.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:49.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:49.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:49.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:49.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:49.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:49.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:49.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:49.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:49.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:49.522][self$createEntryFromContent] Accession numbers: 88123.
biodb.TRACE[2024-07-21 23:58:49.523][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:49.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:49.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.528][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:49.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:49.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.533][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:49.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:49.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:49.538][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:49.539][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:49.540][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:49.555][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:49.556][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:49.557][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:49.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:49.560][private$loadEntries] Creating entries from ids [1]: "134117".
biodb.DEBUG[2024-07-21 23:58:49.561][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-21 23:58:49.563][cch$loadFileContent] Trying to load 1 files from cache: [1]: "134117".
biodb.TRACE[2024-07-21 23:58:49.565][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 23:58:49.579][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/134117.xml".
biodb.DEBUG[2024-07-21 23:58:49.580][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-21 23:58:49.582][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-21 23:58:49.583][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-21 23:58:49.585][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:49.586][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:49.587][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:49.601][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:49.602][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:49.603][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:49.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:49.607][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:49.608][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:49.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.616][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:49.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:49.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.623][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 23:58:49.624][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 23:58:49.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.627][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.628][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 23:58:49.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 23:58:49.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.633][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 23:58:49.634][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 23:58:49.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.637][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.638][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 23:58:49.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 23:58:49.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.643][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 23:58:49.644][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 23:58:49.646][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.647][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.648][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 23:58:49.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 23:58:49.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.653][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 23:58:49.655][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 23:58:49.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.657][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.659][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 23:58:49.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 23:58:49.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.664][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:49.665][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:49.666][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.667][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.669][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 23:58:49.670][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:49.671][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.672][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.674][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 23:58:49.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:49.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.679][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:49.680][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:49.681][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.683][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.684][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:49.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:49.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.689][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:49.691][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:49.693][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.695][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.697][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:49.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:49.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.705][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 23:58:49.707][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 23:58:49.709][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.711][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.713][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 23:58:49.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 23:58:49.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.721][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 23:58:49.723][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 23:58:49.725][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.726][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.729][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 23:58:49.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 23:58:49.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.737][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:49.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:49.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.744][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:49.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:49.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:49.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:49.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.769][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:49.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:49.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:49.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:49.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:49.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:49.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:49.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:49.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:49.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:49.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:49.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:49.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:49.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:49.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:49.822][self$createEntryFromContent] Accession numbers: 134117.
biodb.TRACE[2024-07-21 23:58:49.824][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:49.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:49.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.831][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:49.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:49.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.839][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:49.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:49.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:49.846][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:49.848][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:49.850][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:49.892][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:49.895][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:49.897][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:49.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:49.901][private$loadEntries] Creating entries from ids [1]: "138307".
biodb.DEBUG[2024-07-21 23:58:49.903][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-21 23:58:49.907][cch$loadFileContent] Trying to load 1 files from cache: [1]: "138307".
biodb.TRACE[2024-07-21 23:58:49.909][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 23:58:49.921][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/138307.xml".
biodb.DEBUG[2024-07-21 23:58:49.923][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-21 23:58:49.924][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-21 23:58:49.927][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-21 23:58:49.930][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:49.932][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:49.934][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:49.951][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:49.953][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:49.954][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:49.955][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:49.958][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:49.959][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:49.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.962][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:49.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:49.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.968][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 23:58:49.970][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 23:58:49.971][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.972][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.974][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 23:58:49.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 23:58:49.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.985][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 23:58:49.986][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 23:58:49.988][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.989][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.991][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 23:58:49.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 23:58:49.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:49.996][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 23:58:49.997][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 23:58:49.998][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:49.999][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.001][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 23:58:50.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 23:58:50.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.006][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 23:58:50.007][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 23:58:50.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.010][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.011][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 23:58:50.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 23:58:50.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.016][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:50.018][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:50.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.020][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.022][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 23:58:50.023][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:50.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.025][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.027][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 23:58:50.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:50.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.032][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:50.033][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:50.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.036][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.037][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:50.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:50.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.042][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:50.044][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:50.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.046][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.047][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:50.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:50.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.053][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 23:58:50.054][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 23:58:50.055][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.056][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.058][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 23:58:50.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 23:58:50.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.063][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 23:58:50.064][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 23:58:50.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.066][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.068][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 23:58:50.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 23:58:50.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.073][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:50.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:50.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.078][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:50.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:50.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:50.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:50.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.088][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:50.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:50.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.093][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:50.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:50.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:50.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:50.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:50.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:50.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.114][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:50.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:50.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.119][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:50.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:50.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:50.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:50.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:50.129][self$createEntryFromContent] Accession numbers: 138307.
biodb.TRACE[2024-07-21 23:58:50.131][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:50.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:50.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.136][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:50.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:50.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.141][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:50.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:50.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:50.146][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:50.147][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:50.148][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:50.162][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:50.163][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:50.164][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:50.165][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:50.167][private$loadEntries] Creating entries from ids [1]: "176803".
biodb.DEBUG[2024-07-21 23:58:50.168][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-21 23:58:50.170][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176803".
biodb.TRACE[2024-07-21 23:58:50.172][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 23:58:50.183][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176803.xml".
biodb.DEBUG[2024-07-21 23:58:50.185][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-21 23:58:50.187][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-21 23:58:50.188][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-21 23:58:50.190][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:50.191][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:50.193][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:50.205][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:50.206][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:50.207][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:50.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:50.211][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:50.213][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:50.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.215][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:50.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:50.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.222][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 23:58:50.224][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 23:58:50.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.226][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.228][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 23:58:50.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 23:58:50.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.233][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 23:58:50.234][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 23:58:50.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.237][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.239][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 23:58:50.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 23:58:50.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.244][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 23:58:50.245][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 23:58:50.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.253][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.255][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 23:58:50.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 23:58:50.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.261][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 23:58:50.262][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 23:58:50.263][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.264][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.266][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 23:58:50.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 23:58:50.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.271][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:50.273][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:50.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.275][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.277][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 23:58:50.278][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:50.279][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.280][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.282][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 23:58:50.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:50.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.287][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:50.289][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:50.290][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.291][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.293][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:50.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:50.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.298][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:50.299][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:50.300][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.302][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.303][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:50.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:50.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.309][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 23:58:50.310][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 23:58:50.311][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.313][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.314][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 23:58:50.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 23:58:50.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.320][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 23:58:50.321][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 23:58:50.322][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.324][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.325][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 23:58:50.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 23:58:50.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.330][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:50.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:50.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.336][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:50.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:50.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:50.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:50.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.346][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:50.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:50.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:50.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:50.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:50.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:50.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.362][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:50.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:50.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.367][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:50.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:50.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.378][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:50.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:50.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:50.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:50.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:50.389][self$createEntryFromContent] Accession numbers: 176803.
biodb.TRACE[2024-07-21 23:58:50.391][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:50.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:50.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.396][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:50.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:50.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.401][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:50.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:50.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:50.407][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:50.408][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:50.409][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:50.417][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:50.418][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:50.419][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:50.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:50.422][private$loadEntries] Creating entries from ids [1]: "176962".
biodb.DEBUG[2024-07-21 23:58:50.423][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-21 23:58:50.425][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176962".
biodb.TRACE[2024-07-21 23:58:50.427][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 23:58:50.441][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176962.xml".
biodb.DEBUG[2024-07-21 23:58:50.442][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-21 23:58:50.444][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-21 23:58:50.446][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-21 23:58:50.448][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:50.449][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:50.450][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:50.465][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:50.466][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:50.467][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:50.468][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:50.471][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:50.472][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:50.473][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.475][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.476][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:50.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:50.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.481][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 23:58:50.483][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 23:58:50.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.485][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.487][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 23:58:50.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 23:58:50.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.492][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 23:58:50.493][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 23:58:50.494][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.495][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.497][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 23:58:50.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 23:58:50.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.502][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 23:58:50.503][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 23:58:50.504][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.506][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.507][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 23:58:50.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 23:58:50.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.512][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 23:58:50.513][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 23:58:50.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.516][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.517][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 23:58:50.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 23:58:50.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.529][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:50.530][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:50.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.533][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.534][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 23:58:50.536][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:50.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.538][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.540][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 23:58:50.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:50.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.545][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:50.546][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:50.547][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.548][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.550][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:50.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:50.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.555][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:50.556][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:50.557][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.559][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.560][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:50.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:50.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.565][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 23:58:50.567][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 23:58:50.568][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.569][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.571][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 23:58:50.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 23:58:50.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.576][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 23:58:50.577][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 23:58:50.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.579][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.581][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 23:58:50.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 23:58:50.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.586][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:50.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:50.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.591][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:50.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:50.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:50.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:50.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.601][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:50.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:50.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:50.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:50.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:50.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:50.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:50.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:50.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.621][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:50.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:50.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:50.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:50.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:50.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:50.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:50.636][self$createEntryFromContent] Accession numbers: 176962.
biodb.TRACE[2024-07-21 23:58:50.637][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:50.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:50.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.648][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:50.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:50.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.653][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:50.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:50.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:50.658][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:50.659][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:50.660][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:50.668][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:50.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:50.670][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:50.671][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:50.672][private$loadEntries] Creating entries from ids [1]: "198655".
biodb.DEBUG[2024-07-21 23:58:50.674][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-21 23:58:50.676][cch$loadFileContent] Trying to load 1 files from cache: [1]: "198655".
biodb.TRACE[2024-07-21 23:58:50.678][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 23:58:50.689][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/198655.xml".
biodb.DEBUG[2024-07-21 23:58:50.691][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-21 23:58:50.692][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-21 23:58:50.694][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-21 23:58:50.696][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:50.697][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:50.698][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:50.705][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:50.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:50.708][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:50.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:50.712][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:50.714][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:50.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.716][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.718][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:50.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:50.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.723][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 23:58:50.725][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 23:58:50.726][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.727][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.728][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 23:58:50.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 23:58:50.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.734][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 23:58:50.735][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 23:58:50.736][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.737][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.739][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 23:58:50.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 23:58:50.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.745][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 23:58:50.746][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 23:58:50.747][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.748][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.750][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 23:58:50.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 23:58:50.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.755][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 23:58:50.756][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 23:58:50.757][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.758][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.760][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 23:58:50.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 23:58:50.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.765][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:50.766][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:50.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.769][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.770][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 23:58:50.772][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:50.773][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.780][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.782][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 23:58:50.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:50.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.787][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:50.789][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:50.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.791][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.792][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:50.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:50.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.797][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:50.799][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:50.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.801][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.803][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:50.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:50.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.808][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 23:58:50.809][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 23:58:50.810][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.812][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.813][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 23:58:50.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 23:58:50.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.818][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 23:58:50.820][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 23:58:50.821][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.822][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.823][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 23:58:50.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 23:58:50.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.829][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:50.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:50.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.833][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:50.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:50.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:50.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:50.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.843][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:50.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:50.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:50.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:50.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.853][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:50.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:50.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:50.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:50.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:50.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:50.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:50.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:50.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:50.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:50.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:50.878][self$createEntryFromContent] Accession numbers: 198655.
biodb.TRACE[2024-07-21 23:58:50.879][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:50.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:50.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.884][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:50.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:50.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.889][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:50.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:50.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:50.900][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:50.901][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:50.903][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:50.911][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:50.913][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:50.915][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:50.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:50.919][private$loadEntries] Creating entries from ids [1]: "215045".
biodb.DEBUG[2024-07-21 23:58:50.921][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-21 23:58:50.924][cch$loadFileContent] Trying to load 1 files from cache: [1]: "215045".
biodb.TRACE[2024-07-21 23:58:50.927][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 23:58:50.948][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/215045.xml".
biodb.DEBUG[2024-07-21 23:58:50.950][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-21 23:58:50.952][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-21 23:58:50.953][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-21 23:58:50.955][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:50.957][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:50.958][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:50.971][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:50.972][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:50.974][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:50.975][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:50.978][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:50.979][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:50.980][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.982][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:50.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:50.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.988][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 23:58:50.990][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 23:58:50.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.992][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:50.994][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 23:58:50.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 23:58:50.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:50.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.000][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 23:58:51.001][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 23:58:51.002][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.004][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.006][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 23:58:51.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 23:58:51.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.011][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 23:58:51.012][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 23:58:51.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.015][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.017][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 23:58:51.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 23:58:51.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.022][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 23:58:51.023][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 23:58:51.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.025][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.027][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 23:58:51.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 23:58:51.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.032][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:51.033][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:51.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.036][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.037][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 23:58:51.039][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.040][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.042][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.044][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 23:58:51.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.049][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:51.051][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:51.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.053][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.060][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:51.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:51.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.067][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:51.068][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:51.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.071][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.073][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:51.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:51.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.078][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 23:58:51.080][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 23:58:51.081][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.082][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.084][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 23:58:51.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 23:58:51.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.089][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 23:58:51.091][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 23:58:51.092][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.093][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.095][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 23:58:51.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 23:58:51.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.100][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:51.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:51.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.106][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:51.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:51.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:51.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:51.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.116][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:51.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:51.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:51.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:51.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:51.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:51.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.132][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:51.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:51.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:51.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:51.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:51.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:51.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:51.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:51.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:51.153][self$createEntryFromContent] Accession numbers: 215045.
biodb.TRACE[2024-07-21 23:58:51.155][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.160][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.165][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:51.213][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-21 23:58:51.217][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 23:58:51.219][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-07-21 23:58:51.221][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 23:58:51.223][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-07-21 23:58:51.227][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:51.228][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:51.230][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:51.308][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:51.309][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:51.310][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:51.312][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:51.313][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.318][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.323][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:51.328][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:51.329][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:51.331][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:51.344][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:51.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:51.346][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:51.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:51.349][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.354][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.360][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.365][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.370][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:51.375][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:51.376][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:51.377][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:51.389][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:51.390][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:51.391][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:51.393][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:51.394][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.400][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.405][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.416][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.422][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:51.427][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:51.428][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:51.429][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:51.440][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:51.441][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:51.443][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:51.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:51.445][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.450][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.455][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.460][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.465][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:51.470][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:51.471][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:51.473][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:51.480][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:51.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:51.482][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:51.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:51.485][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.490][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.494][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:51.499][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:51.500][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:51.502][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:51.515][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:51.517][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:51.518][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:51.519][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:51.520][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.525][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.530][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:51.535][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:51.537][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:51.538][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:51.556][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:51.557][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:51.559][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:51.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:51.562][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.567][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.571][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:51.576][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:51.577][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:51.579][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:51.586][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:51.587][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:51.588][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:51.589][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:51.591][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.596][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.601][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:51.606][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:51.607][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:51.608][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:51.618][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:51.620][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:51.621][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:51.622][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:51.623][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.628][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.633][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:51.638][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:51.639][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:51.640][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:51.658][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:51.660][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:51.661][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:51.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:51.663][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.668][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.673][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:51.678][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:51.680][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:51.681][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:51.697][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:51.699][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:51.705][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:51.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:51.709][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.714][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.719][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:51.724][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:51.725][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:51.726][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:51.735][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:51.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:51.737][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:51.739][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:51.740][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.745][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.750][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:51.756][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:51.757][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:51.758][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:51.765][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:51.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:51.767][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:51.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:51.770][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.774][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.779][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:51.784][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:51.785][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:51.786][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:51.794][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:51.795][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:51.796][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:51.797][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:51.799][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.804][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.809][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:51.814][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:51.815][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:51.816][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:51.829][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:51.831][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:51.832][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:51.833][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:51.840][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.846][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.851][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:51.856][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:51.857][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:51.859][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:51.872][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:51.873][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:51.875][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:51.876][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:51.877][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.882][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.887][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:51.892][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:51.894][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:51.895][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:51.908][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:51.910][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:51.911][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:51.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:51.914][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.919][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.924][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:51.929][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:51.930][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:51.931][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:51.938][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:51.940][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:51.941][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:51.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:51.944][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.950][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.955][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:51.960][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:51.962][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:51.963][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:51.974][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:51.976][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:51.977][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:51.978][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:51.980][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.992][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:51.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:51.998][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:51.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:52.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:52.003][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:52.004][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:52.005][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:52.013][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:52.014][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:52.015][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:52.016][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:52.018][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:52.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:52.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.023][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:52.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:52.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.028][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:52.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:52.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.065][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:52.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:52.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.070][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:52.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:52.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.075][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:52.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:52.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.080][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:52.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:52.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.085][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:52.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:52.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:52.119][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-21 23:58:52.124][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 23:58:52.126][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c5171beada848a87ef2ffa10427d9be3".
biodb.TRACE[2024-07-21 23:58:52.127][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 23:58:52.143][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c5171beada848a87ef2ffa10427d9be3.content".
biodb.DEBUG[2024-07-21 23:58:52.148][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-21 23:58:52.152][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 23:58:52.154][cch$loadFileContent] Trying to load 1 files from cache: [1]: "750e63ff76a843f016511fa71c89113e".
biodb.TRACE[2024-07-21 23:58:52.155][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 23:58:52.193][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/750e63ff76a843f016511fa71c89113e.content".
biodb.DEBUG[2024-07-21 23:58:52.196][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:52.197][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:52.198][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:52.211][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:52.212][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:52.214][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:52.215][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:52.216][private$loadEntries] Creating entries from ids [1]: "4648".
biodb.DEBUG[2024-07-21 23:58:52.218][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-21 23:58:52.219][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4648".
biodb.TRACE[2024-07-21 23:58:52.222][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 23:58:52.234][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4648.xml".
biodb.DEBUG[2024-07-21 23:58:52.236][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-21 23:58:52.238][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-21 23:58:52.240][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-21 23:58:52.242][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:52.243][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:52.244][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:52.251][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:52.252][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:52.253][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:52.255][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:52.257][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:52.259][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:52.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.261][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:52.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:52.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.268][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 23:58:52.269][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 23:58:52.270][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.272][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.273][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 23:58:52.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 23:58:52.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.278][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 23:58:52.279][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 23:58:52.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.282][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.283][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 23:58:52.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 23:58:52.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.289][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 23:58:52.290][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 23:58:52.291][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.292][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.294][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 23:58:52.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 23:58:52.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.305][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 23:58:52.306][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 23:58:52.308][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.309][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.311][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 23:58:52.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 23:58:52.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.316][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:52.317][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:52.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.320][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.321][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:52.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:52.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.326][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 23:58:52.328][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:52.329][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.330][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.332][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 23:58:52.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:52.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.337][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:52.338][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:52.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.341][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.342][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:52.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:52.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.348][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:52.349][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:52.350][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.351][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.353][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:52.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:52.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.358][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 23:58:52.359][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 23:58:52.361][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.362][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.363][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 23:58:52.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 23:58:52.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.371][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 23:58:52.373][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 23:58:52.375][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.377][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.379][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 23:58:52.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 23:58:52.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.386][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:52.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:52.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.394][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:52.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:52.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:52.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:52.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.409][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:52.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:52.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.418][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:52.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:52.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:52.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:52.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:52.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:52.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:52.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:52.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:52.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:52.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:52.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:52.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:52.476][self$createEntryFromContent] Accession numbers: 4648.
biodb.TRACE[2024-07-21 23:58:52.479][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:52.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:52.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.486][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:52.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:52.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.494][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:52.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:52.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:52.502][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:52.504][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:52.505][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:52.529][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:52.531][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:52.532][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:52.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:52.535][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:52.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:52.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.541][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:52.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:52.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.546][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:52.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:52.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:52.551][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:52.553][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:52.554][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:52.565][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:52.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:52.568][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:52.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:52.571][private$loadEntries] Creating entries from ids [1]: "62447".
biodb.DEBUG[2024-07-21 23:58:52.573][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-21 23:58:52.575][cch$loadFileContent] Trying to load 1 files from cache: [1]: "62447".
biodb.TRACE[2024-07-21 23:58:52.577][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 23:58:52.608][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62447.xml".
biodb.DEBUG[2024-07-21 23:58:52.610][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-21 23:58:52.612][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-21 23:58:52.613][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-21 23:58:52.615][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:52.616][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:52.617][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:52.634][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:52.636][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:52.637][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:52.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:52.641][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:52.642][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:52.643][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.644][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.646][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:52.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:52.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.654][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 23:58:52.656][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 23:58:52.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.659][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.660][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 23:58:52.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 23:58:52.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.824][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 23:58:52.825][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 23:58:52.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.827][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.829][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 23:58:52.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 23:58:52.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.834][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 23:58:52.835][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 23:58:52.837][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.838][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.839][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 23:58:52.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 23:58:52.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.844][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 23:58:52.845][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 23:58:52.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.848][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.849][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 23:58:52.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 23:58:52.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.854][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:52.855][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:52.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.858][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.859][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 23:58:52.860][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:52.862][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.863][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.864][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 23:58:52.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:52.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.869][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:52.870][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:52.871][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.873][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.874][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:52.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:52.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.879][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:52.880][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:52.881][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.883][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.884][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:52.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:52.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.889][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 23:58:52.890][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 23:58:52.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.893][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.894][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 23:58:52.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 23:58:52.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.900][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 23:58:52.901][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 23:58:52.903][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.904][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.905][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 23:58:52.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 23:58:52.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.911][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:52.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:52.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.916][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:52.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:52.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:52.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:52.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.926][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:52.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:52.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.931][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:52.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:52.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.936][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:52.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:52.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:52.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:52.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.946][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:52.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:52.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:52.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:52.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:52.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:52.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:52.962][self$createEntryFromContent] Accession numbers: 62447.
biodb.TRACE[2024-07-21 23:58:52.964][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:52.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:52.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.969][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:52.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:52.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:52.975][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:52.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:52.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:52.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:53.023][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-21 23:58:53.028][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 23:58:53.030][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-07-21 23:58:53.032][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 23:58:53.034][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-07-21 23:58:53.039][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:53.040][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:53.041][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:53.054][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:53.055][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:53.057][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:53.058][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:53.060][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:53.066][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:53.071][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:53.077][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:53.079][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:53.080][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:53.090][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:53.091][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:53.093][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:53.094][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:53.096][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:53.101][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:53.107][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:53.113][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:53.119][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:53.124][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:53.126][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:53.127][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:53.135][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:53.137][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:53.138][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:53.139][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:53.141][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:53.147][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:53.153][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:53.159][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:53.165][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:53.171][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:53.172][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:53.173][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:53.189][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:53.192][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:53.194][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:53.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:53.199][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:53.208][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:53.217][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:53.223][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:53.229][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:53.235][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:53.236][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:53.237][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:53.256][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:53.258][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:53.259][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:53.260][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:53.262][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:53.268][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:53.274][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:53.279][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:53.281][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:53.282][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:53.290][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:53.291][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:53.293][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:53.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:53.296][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:53.302][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:53.307][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:53.313][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:53.314][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:53.316][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:53.324][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:53.325][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:53.326][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:53.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:53.329][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:53.335][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:53.341][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:53.347][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:53.348][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:53.349][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:53.357][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:53.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:53.360][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:53.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:53.363][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:53.369][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:53.382][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:53.386][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:53.388][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:53.389][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:53.416][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:53.417][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:53.418][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:53.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:53.421][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:53.426][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:53.430][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:53.435][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:53.436][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:53.437][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:53.485][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:53.486][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:53.487][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:53.488][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:53.490][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:53.495][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:53.500][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:53.504][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:53.505][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:53.507][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:53.520][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:53.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:53.522][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:53.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:53.525][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:53.530][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:53.535][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:53.539][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:53.541][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:53.542][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:53.549][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:53.550][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:53.551][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:53.552][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:53.554][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:53.558][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:53.563][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:53.568][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:53.569][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:53.570][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:53.585][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:53.587][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:53.588][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:53.589][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:53.591][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:53.596][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:53.601][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:53.606][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:53.607][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:53.608][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:53.621][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:53.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:53.624][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:53.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:53.626][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:53.631][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:53.636][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:53.641][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:53.642][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:53.643][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:53.651][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:53.652][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:53.653][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:53.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:53.656][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:53.661][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:53.666][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:53.671][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:53.672][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:53.673][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:53.687][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:53.688][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:53.689][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:53.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:53.692][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:53.697][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:53.702][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:53.707][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:53.708][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:53.709][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:53.721][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:53.722][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:53.723][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:53.725][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:53.726][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:53.732][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:53.737][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:53.742][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:53.743][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:53.744][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:53.754][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:53.756][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:53.758][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:53.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:53.762][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:53.770][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:53.777][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:53.782][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:53.783][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:53.784][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:53.800][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:53.802][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:53.803][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:53.804][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:53.806][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:53.813][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:53.821][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:53.830][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:53.832][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:53.834][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:53.849][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:53.851][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:53.852][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:53.853][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:53.855][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:53.863][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:53.872][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:53.922][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-21 23:58:53.925][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 23:58:53.927][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-07-21 23:58:53.929][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 23:58:53.931][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-07-21 23:58:53.935][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:53.936][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:53.937][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:53.951][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:53.952][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:53.953][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:53.954][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:53.956][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:53.961][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:53.966][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:53.971][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:53.973][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:53.974][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:53.984][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:53.985][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:53.986][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:53.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:53.989][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:53.994][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:53.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:53.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:53.999][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:54.004][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:54.009][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:54.014][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:54.015][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:54.017][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:54.029][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:54.031][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:54.032][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:54.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:54.035][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:54.043][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:54.050][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:54.054][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:54.059][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:54.064][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:54.066][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:54.067][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:54.089][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:54.090][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:54.091][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:54.093][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:54.094][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:54.099][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:54.105][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:54.110][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:54.115][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:54.120][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:54.121][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:54.123][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:54.143][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:54.144][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:54.145][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:54.146][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:54.148][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:54.153][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:54.158][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:54.163][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:54.164][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:54.165][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:54.172][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:54.173][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:54.174][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:54.175][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:54.177][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:54.182][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:54.187][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:54.192][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:54.193][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:54.194][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:54.211][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:54.212][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:54.213][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:54.214][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:54.216][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:54.221][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:54.226][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:54.231][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:54.232][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:54.233][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:54.240][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:54.241][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:54.242][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:54.243][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:54.245][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:54.250][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:54.255][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:54.259][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:54.260][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:54.262][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:54.272][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:54.274][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:54.275][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:54.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:54.278][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:54.283][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:54.288][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:54.293][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:54.294][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:54.295][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:54.306][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:54.308][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:54.309][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:54.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:54.311][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:54.316][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:54.321][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:54.326][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:54.327][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:54.328][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:54.341][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:54.343][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:54.344][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:54.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:54.346][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:54.351][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:54.358][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:54.366][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:54.367][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:54.369][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:54.378][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:54.380][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:54.381][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:54.382][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:54.383][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:54.388][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:54.393][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:54.398][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:54.399][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:54.400][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:54.409][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:54.410][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:54.411][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:54.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:54.414][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:54.420][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:54.428][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:54.435][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:54.437][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:54.439][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:54.452][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:54.453][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:54.454][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:54.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:54.457][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:54.462][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:54.467][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:54.472][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:54.473][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:54.474][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:54.484][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:54.485][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:54.486][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:54.487][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:54.489][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:54.494][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:54.499][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:54.504][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:54.505][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:54.506][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:54.513][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:54.514][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:54.515][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:54.516][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:54.518][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:54.523][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:54.528][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:54.533][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:54.534][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:54.535][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:54.542][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:54.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:54.545][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:54.547][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:54.548][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:54.553][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:54.558][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:54.563][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:54.564][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:54.565][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:54.583][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:54.584][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:54.585][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:54.587][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:54.588][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:54.593][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:54.598][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:54.602][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:54.604][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:54.605][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:54.617][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:54.618][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:54.620][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:54.621][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:54.622][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:54.627][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:54.632][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:54.637][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:54.638][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:54.639][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:54.651][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:54.652][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:54.653][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:54.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:54.656][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:54.660][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:54.665][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:54.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:54.708][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-07-21 23:58:54.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-07-21 23:58:54.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-07-21 23:58:54.725][biodb::testThat]
biodb.INFO [2024-07-21 23:58:54.727][biodb::testThat] Running test function test_annotateMzValues_input_vector (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2024-07-21 23:58:54.728][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-21 23:58:54.729][biodb::testThat]
biodb.TRACE[2024-07-21 23:58:54.733][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-21 23:58:54.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-21 23:58:54.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:54.738][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:54.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:54.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:54.743][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:54.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:54.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:54.748][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:54.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:54.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:54.753][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:54.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:54.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:54.761][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:54.762][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:54.763][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:54.770][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:54.771][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:54.773][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:54.774][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:54.777][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-21 23:58:54.781][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 23:58:54.782][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-07-21 23:58:54.784][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 23:58:54.786][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-07-21 23:58:54.789][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:54.790][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:54.791][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:54.803][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:54.804][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:54.806][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:54.807][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:54.809][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:54.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:54.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:54.817][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:54.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:54.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:54.825][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:54.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:54.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:54.834][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-21 23:58:54.840][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 23:58:54.843][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-07-21 23:58:54.845][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 23:58:54.847][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-07-21 23:58:54.849][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:54.850][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:54.852][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:54.869][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:54.870][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:54.871][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:54.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:54.874][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:54.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:54.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:54.879][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:54.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:54.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:54.884][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:54.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:54.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:54.889][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:54.890][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:54.891][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:54.906][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:54.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:54.909][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:54.910][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:54.912][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:54.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:54.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:54.916][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:54.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:54.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:54.921][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:54.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:54.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:54.927][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-21 23:58:54.928][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:54.929][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:54.931][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:54.941][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:54.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:54.943][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:54.944][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:54.946][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:54.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:54.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:54.951][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:54.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:54.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:54.956][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:54.957][private$selectFields]
biodb.TRACE[2024-07-21 23:58:54.958][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-21 23:58:54.959][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-21 23:58:54.961][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:54.962][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:54.963][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:54.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.965][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:54.967][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:54.968][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:54.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.970][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:54.971][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:54.973][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:54.974][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:54.975][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:54.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.977][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:54.979][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-21 23:58:54.980][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:54.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:54.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:54.985][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:54.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:54.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:54.990][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:54.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:54.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:54.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:55.002][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2024-07-21 23:58:55.004][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:55.005][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:55.006][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:55.018][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:55.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:55.021][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:55.022][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:55.023][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:55.029][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:55.034][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:55.035][private$selectFields]
biodb.TRACE[2024-07-21 23:58:55.036][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-21 23:58:55.037][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-21 23:58:55.038][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:55.040][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.041][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.044][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:55.045][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.046][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.047][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.049][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:55.050][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:55.051][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:55.052][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.053][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.055][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.056][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:55.057][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-21 23:58:55.059][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:55.064][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:55.069][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:55.074][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-07-21 23:58:55.076][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:55.077][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:55.078][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:55.091][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:55.093][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:55.094][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:55.095][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:55.097][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:55.102][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:55.107][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:55.108][private$selectFields]
biodb.TRACE[2024-07-21 23:58:55.109][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-21 23:58:55.111][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-21 23:58:55.112][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:55.119][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.120][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.123][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:55.124][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.125][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.126][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.127][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:55.129][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:55.130][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:55.131][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.133][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.134][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.135][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:55.136][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-21 23:58:55.137][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:55.143][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:55.147][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:55.153][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2024-07-21 23:58:55.154][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-21 23:58:55.155][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-07-21 23:58:55.175][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:55.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:55.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:55.181][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:55.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:55.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:55.185][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:55.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:55.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:55.190][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:55.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:55.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:55.240][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:55.242][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:55.243][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:55.253][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:55.254][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:55.256][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:55.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:55.260][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-21 23:58:55.264][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 23:58:55.266][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-07-21 23:58:55.267][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 23:58:55.271][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-07-21 23:58:55.274][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-21 23:58:55.278][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 23:58:55.280][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-07-21 23:58:55.282][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 23:58:55.285][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-07-21 23:58:55.289][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:55.290][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:55.291][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:55.298][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:55.300][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:55.301][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:55.302][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:55.304][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:55.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:55.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:55.309][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:55.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:55.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:55.314][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:55.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:55.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:55.319][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:55.320][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:55.321][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:55.333][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:55.335][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:55.337][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:55.338][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:55.339][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:55.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:55.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:55.345][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:55.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:55.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:55.350][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:55.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:55.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:55.355][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:55.356][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:55.358][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:55.373][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:55.375][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:55.376][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:55.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:55.379][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:55.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:55.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:55.384][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:55.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:55.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:55.389][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:55.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:55.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:55.415][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-21 23:58:55.435][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:55.437][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:55.438][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:55.445][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:55.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:55.447][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:55.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:55.450][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:55.454][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:55.459][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:55.461][private$selectFields]
biodb.TRACE[2024-07-21 23:58:55.462][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-21 23:58:55.463][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-21 23:58:55.464][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:55.465][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.467][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.469][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:55.470][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.471][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.473][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.474][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:55.475][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:55.476][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:55.478][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.479][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.480][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.481][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:55.482][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-21 23:58:55.484][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:55.489][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:55.493][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:55.499][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-07-21 23:58:55.500][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:55.501][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:55.502][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:55.509][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:55.510][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:55.511][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:55.513][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:55.529][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:55.535][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:55.556][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:55.557][private$selectFields]
biodb.TRACE[2024-07-21 23:58:55.559][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-21 23:58:55.560][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-21 23:58:55.561][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:55.562][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.563][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.565][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.566][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:55.567][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.568][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.570][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:55.572][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:55.581][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:55.582][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.584][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.586][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:55.587][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-21 23:58:55.588][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:55.593][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:55.598][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:55.603][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-07-21 23:58:55.604][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:55.605][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:55.606][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:55.613][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:55.615][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:55.616][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:55.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:55.618][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:55.625][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:55.630][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:55.631][private$selectFields]
biodb.TRACE[2024-07-21 23:58:55.632][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-21 23:58:55.634][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-21 23:58:55.635][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:55.636][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.638][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.642][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:55.644][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.646][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.650][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:55.652][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:55.654][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:55.656][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.658][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.662][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:55.664][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-21 23:58:55.666][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:55.675][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:55.683][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:55.691][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-07-21 23:58:55.693][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-21 23:58:55.695][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-07-21 23:58:55.713][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-07-21 23:58:55.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-07-21 23:58:55.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-07-21 23:58:55.735][biodb::testThat]
biodb.INFO [2024-07-21 23:58:55.737][biodb::testThat] Running test function test_annotateMzValues_ppm_tol (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2024-07-21 23:58:55.738][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-21 23:58:55.739][biodb::testThat]
biodb.TRACE[2024-07-21 23:58:55.743][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-21 23:58:55.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-21 23:58:55.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:55.748][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:55.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:55.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:55.753][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:55.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:55.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:55.758][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:55.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:55.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:55.763][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:55.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:55.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:55.771][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:55.772][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:55.773][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:55.780][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:55.782][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:55.783][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:55.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:55.787][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-21 23:58:55.791][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 23:58:55.792][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-07-21 23:58:55.794][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 23:58:55.796][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-07-21 23:58:55.799][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:55.800][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:55.801][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:55.809][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:55.810][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:55.811][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:55.812][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:55.814][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:55.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:55.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:55.819][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:55.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:55.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:55.824][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:55.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:55.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:55.830][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-21 23:58:55.833][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 23:58:55.835][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-07-21 23:58:55.837][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 23:58:55.839][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-07-21 23:58:55.842][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:55.843][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:55.844][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:55.851][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:55.853][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:55.854][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:55.855][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:55.856][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:55.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:55.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:55.861][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:55.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:55.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:55.866][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:55.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:55.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:55.872][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:55.874][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:55.876][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:55.887][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:55.889][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:55.891][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:55.893][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:55.895][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:55.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:55.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:55.903][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:55.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:55.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:55.910][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:55.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:55.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:55.915][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-21 23:58:55.917][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:55.918][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:55.919][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:55.926][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:55.928][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:55.929][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:55.930][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:55.931][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:55.937][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:55.942][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:55.943][private$selectFields]
biodb.TRACE[2024-07-21 23:58:55.944][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-21 23:58:55.945][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-21 23:58:55.946][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:55.948][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.949][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.950][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.951][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:55.953][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.954][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.956][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:55.958][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:55.959][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:55.960][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.961][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.964][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:55.965][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-21 23:58:55.966][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:55.971][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:55.976][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:55.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:55.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:55.982][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2024-07-21 23:58:55.983][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:55.984][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:55.985][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:55.998][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:56.000][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:56.001][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:56.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:56.009][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:56.014][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:56.019][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:56.020][private$selectFields]
biodb.TRACE[2024-07-21 23:58:56.021][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-21 23:58:56.022][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-21 23:58:56.023][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:56.025][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.026][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.028][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:56.029][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.031][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.033][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:56.034][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:56.036][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:56.037][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.038][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.040][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:56.042][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-21 23:58:56.043][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:56.048][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:56.053][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:56.058][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-07-21 23:58:56.059][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:56.060][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:56.062][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:56.069][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:56.070][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:56.071][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:56.072][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:56.074][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:56.079][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:56.084][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:56.085][private$selectFields]
biodb.TRACE[2024-07-21 23:58:56.086][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-21 23:58:56.087][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-21 23:58:56.089][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:56.090][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.091][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.094][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:56.095][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.096][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.097][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.099][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:56.100][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:56.101][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:56.102][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.104][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.105][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.106][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:56.107][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-21 23:58:56.109][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:56.114][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:56.118][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:56.124][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2024-07-21 23:58:56.125][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-21 23:58:56.126][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-07-21 23:58:56.144][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:56.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:56.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:56.150][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:56.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:56.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:56.157][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:56.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:56.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:56.165][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:56.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:56.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:56.177][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:56.179][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:56.181][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:56.198][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:56.200][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:56.201][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:56.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:56.205][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-21 23:58:56.209][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 23:58:56.210][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-07-21 23:58:56.212][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 23:58:56.214][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-07-21 23:58:56.218][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-21 23:58:56.221][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 23:58:56.223][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-07-21 23:58:56.224][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 23:58:56.226][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-07-21 23:58:56.229][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:56.230][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:56.231][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:56.245][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:56.247][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:56.248][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:56.249][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:56.250][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:56.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:56.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:56.255][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:56.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:56.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:56.260][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:56.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:56.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:56.265][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:56.266][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:56.267][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:56.287][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:56.288][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:56.289][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:56.290][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:56.292][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:56.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:56.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:56.297][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:56.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:56.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:56.302][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:56.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:56.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:56.307][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:56.308][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:56.309][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:56.322][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:56.323][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:56.324][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:56.325][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:56.327][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:56.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:56.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:56.332][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:56.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:56.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:56.336][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:56.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:56.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:56.341][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-21 23:58:56.343][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:56.344][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:56.345][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:56.358][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:56.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:56.360][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:56.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:56.363][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:56.368][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:56.373][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:56.374][private$selectFields]
biodb.TRACE[2024-07-21 23:58:56.375][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-21 23:58:56.376][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-21 23:58:56.377][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:56.379][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.380][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.381][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.382][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:56.384][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.385][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.386][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.387][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:56.389][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:56.390][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:56.391][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.392][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.393][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.395][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:56.396][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-21 23:58:56.397][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:56.402][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:56.407][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:56.412][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-07-21 23:58:56.413][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:56.414][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:56.415][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:56.426][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:56.427][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:56.429][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:56.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:56.431][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:56.436][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:56.441][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:56.442][private$selectFields]
biodb.TRACE[2024-07-21 23:58:56.443][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-21 23:58:56.444][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-21 23:58:56.445][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:56.447][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.448][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.450][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:56.451][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.453][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.455][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:56.456][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:56.457][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:56.458][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.460][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.461][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.462][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:56.463][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-21 23:58:56.464][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:56.469][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:56.474][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:56.479][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-07-21 23:58:56.481][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:56.482][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:56.483][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:56.508][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:56.509][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:56.511][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:56.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:56.513][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:56.518][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:56.523][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:56.524][private$selectFields]
biodb.TRACE[2024-07-21 23:58:56.526][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-21 23:58:56.527][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-21 23:58:56.528][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:56.529][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.531][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.538][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:56.539][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.541][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.543][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:56.544][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:56.546][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:56.547][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.548][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.549][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.550][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:56.552][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-21 23:58:56.553][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:56.558][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:56.563][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:56.568][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-07-21 23:58:56.569][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-21 23:58:56.571][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-07-21 23:58:56.585][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-07-21 23:58:56.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-07-21 23:58:56.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-07-21 23:58:56.609][biodb::testThat]
biodb.INFO [2024-07-21 23:58:56.610][biodb::testThat] Running test function test_annotateMzValues_input_dataframe_untouched (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2024-07-21 23:58:56.612][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-21 23:58:56.613][biodb::testThat]
biodb.TRACE[2024-07-21 23:58:56.617][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-21 23:58:56.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-21 23:58:56.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:56.622][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:56.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:56.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:56.626][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:56.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:56.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:56.631][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:56.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:56.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:56.636][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:56.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:56.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:56.645][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:56.646][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:56.647][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:56.654][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:56.655][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:56.657][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:56.658][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:56.661][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-21 23:58:56.664][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 23:58:56.666][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-07-21 23:58:56.668][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 23:58:56.670][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-07-21 23:58:56.673][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:56.674][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:56.675][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:56.687][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:56.688][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:56.690][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:56.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:56.692][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:56.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:56.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:56.697][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:56.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:56.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:56.702][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:56.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:56.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:56.708][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-21 23:58:56.712][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 23:58:56.713][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-07-21 23:58:56.715][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 23:58:56.717][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-07-21 23:58:56.720][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:56.721][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:56.722][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:56.799][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:56.800][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:56.802][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:56.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:56.804][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:56.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:56.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:56.809][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:56.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:56.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:56.814][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:56.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:56.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:56.819][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:56.820][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:56.822][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:56.829][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:56.830][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:56.831][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:56.832][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:56.834][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:56.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:56.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:56.839][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:56.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:56.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:56.844][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:56.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:56.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:56.849][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-21 23:58:56.851][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:56.852][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:56.853][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:56.862][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:56.863][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:56.864][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:56.865][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:56.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:56.872][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:56.876][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:56.878][private$selectFields]
biodb.TRACE[2024-07-21 23:58:56.879][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-21 23:58:56.880][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-21 23:58:56.881][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:56.882][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.883][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.886][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:56.887][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.888][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.890][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:56.892][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:56.893][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:56.894][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.895][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.896][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.898][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:56.899][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-21 23:58:56.900][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:56.905][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:56.910][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:56.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:56.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:56.915][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2024-07-21 23:58:56.916][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:56.917][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:56.918][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:57.697][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:57.698][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:57.699][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:57.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:57.702][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:57.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:57.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:57.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:57.707][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:57.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:57.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:57.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:57.713][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:57.714][private$selectFields]
biodb.TRACE[2024-07-21 23:58:57.715][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-21 23:58:57.716][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-21 23:58:57.717][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:57.719][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:57.720][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:57.721][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:57.722][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:57.724][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:57.725][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:57.726][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:57.727][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:57.729][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:57.730][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:57.731][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:57.733][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:57.734][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:57.735][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:57.736][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-21 23:58:57.738][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:57.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:57.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:57.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:57.743][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:57.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:57.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:57.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:57.748][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:57.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:57.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:57.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:57.753][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-07-21 23:58:57.754][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:57.755][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:57.756][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:57.790][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:57.792][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:57.793][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:57.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:57.796][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:57.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:57.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:57.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:57.801][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:57.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:57.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:57.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:57.805][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:57.807][private$selectFields]
biodb.TRACE[2024-07-21 23:58:57.808][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-21 23:58:57.809][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-21 23:58:57.810][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:57.811][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:57.813][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:57.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:57.815][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:57.816][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:57.817][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:57.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:57.820][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:57.821][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:57.822][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:57.823][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:57.825][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:57.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:57.827][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:57.828][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-21 23:58:57.830][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:57.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:57.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:57.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:57.835][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:57.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:57.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:57.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:57.840][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:57.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:57.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:57.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:57.845][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2024-07-21 23:58:57.846][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-21 23:58:57.847][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-07-21 23:58:57.894][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:57.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:57.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:57.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:57.899][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:57.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:57.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:57.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:57.910][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:57.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:57.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:57.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:57.915][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:57.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:57.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:57.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:57.924][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:57.925][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:57.926][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:57.940][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:57.941][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:57.942][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:57.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:57.946][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-21 23:58:57.950][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 23:58:57.952][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-07-21 23:58:57.953][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 23:58:57.955][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-07-21 23:58:57.959][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-21 23:58:57.962][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 23:58:57.964][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-07-21 23:58:57.965][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 23:58:57.967][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-07-21 23:58:57.970][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:57.971][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:57.972][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:57.989][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:57.991][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:57.993][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:57.995][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:57.997][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:57.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:58.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.005][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:58.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:58.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.013][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:58.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:58.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:58.021][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:58.023][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:58.024][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:58.043][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:58.044][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:58.046][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:58.047][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:58.048][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:58.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:58.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.054][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:58.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:58.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.059][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:58.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:58.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:58.064][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:58.065][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:58.067][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:58.132][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:58.133][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:58.134][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:58.135][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:58.137][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:58.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:58.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.142][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:58.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:58.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.148][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:58.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:58.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:58.153][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-21 23:58:58.155][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:58.156][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:58.157][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:58.165][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:58.166][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:58.167][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:58.168][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:58.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:58.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:58.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.175][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:58.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:58.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.180][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:58.182][private$selectFields]
biodb.TRACE[2024-07-21 23:58:58.183][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-21 23:58:58.184][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-21 23:58:58.185][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:58.187][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:58.188][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:58.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.190][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.192][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:58.193][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:58.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.196][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.197][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:58.198][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:58.199][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:58.201][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:58.202][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.203][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.204][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-21 23:58:58.206][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:58.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:58.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.211][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:58.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:58.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.216][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:58.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:58.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.222][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-07-21 23:58:58.223][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:58.224][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:58.226][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:58.245][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:58.247][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:58.248][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:58.249][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:58.251][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:58.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:58.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.256][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:58.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:58.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.261][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:58.262][private$selectFields]
biodb.TRACE[2024-07-21 23:58:58.263][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-21 23:58:58.265][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-21 23:58:58.266][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:58.267][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:58.269][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:58.270][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.271][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.272][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:58.274][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:58.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.276][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.278][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:58.279][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:58.280][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:58.282][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:58.283][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.284][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.286][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-21 23:58:58.288][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:58.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:58.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.293][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:58.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:58.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.299][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:58.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:58.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.304][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-07-21 23:58:58.306][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:58.307][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:58.308][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:58.315][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:58.316][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:58.318][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:58.319][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:58.320][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:58.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:58.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.326][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:58.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:58.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.331][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:58.332][private$selectFields]
biodb.TRACE[2024-07-21 23:58:58.333][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-21 23:58:58.335][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-21 23:58:58.336][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:58.337][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:58.339][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:58.340][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.341][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.342][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:58.344][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:58.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.346][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.348][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:58.349][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 23:58:58.350][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:58.352][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:58.353][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.354][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.355][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-21 23:58:58.357][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:58.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:58.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.362][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:58.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:58.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.369][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:58.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:58.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.375][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-07-21 23:58:58.376][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-21 23:58:58.377][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-07-21 23:58:58.406][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-07-21 23:58:58.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-07-21 23:58:58.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-07-21 23:58:58.417][biodb::testThat]
biodb.INFO [2024-07-21 23:58:58.418][biodb::testThat] Running test function test.wrong.entry (" Wrong entry gives NULL ").
biodb.INFO [2024-07-21 23:58:58.419][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-21 23:58:58.420][biodb::testThat]
biodb.DEBUG[2024-07-21 23:58:58.422][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2024-07-21 23:58:58.424][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-21 23:58:58.426][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2024-07-21 23:58:58.428][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 23:58:58.440][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/WRONGA.xml".
biodb.DEBUG[2024-07-21 23:58:58.441][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-21 23:58:58.443][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-21 23:58:58.444][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-21 23:58:58.446][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:58.447][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:58.448][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:58.456][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:58.457][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:58.459][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:58.461][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:58.465][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:58.467][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:58.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.470][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:58.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:58.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.480][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 23:58:58.482][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 23:58:58.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.486][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.488][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 23:58:58.490][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 23:58:58.491][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.493][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.496][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 23:58:58.498][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 23:58:58.499][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.501][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.503][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 23:58:58.505][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 23:58:58.507][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.509][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.511][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:58.513][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:58.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.524][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.526][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 23:58:58.528][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:58.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.532][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.534][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:58.536][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:58.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.539][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.541][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:58.543][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:58.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.547][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.549][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 23:58:58.551][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 23:58:58.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.554][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.557][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 23:58:58.558][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 23:58:58.560][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.562][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.564][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:58.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:58.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.572][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:58.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:58.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:58.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:58.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.587][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:58.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:58.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.594][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:58.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:58.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:58.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:58.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:58.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:58.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.617][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:58.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:58.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.625][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:58.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:58.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.633][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:58.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:58.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:58.640][self$createEntryFromContent] Accession numbers: .
biodb.DEBUG[2024-07-21 23:58:58.642][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2024-07-21 23:58:58.671][biodb::testThat]
biodb.INFO [2024-07-21 23:58:58.673][biodb::testThat] Running test function test.wrong.entry.among.good.ones (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2024-07-21 23:58:58.674][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-21 23:58:58.675][biodb::testThat]
biodb.DEBUG[2024-07-21 23:58:58.701][function(conn, opt)] IDS: [4]: "WRONGB, 15440, 2528, 7799"
biodb.DEBUG[2024-07-21 23:58:58.702][private$loadEntries] Creating entries from ids [3]: "WRONGB, 2528, 7799".
biodb.DEBUG[2024-07-21 23:58:58.704][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
biodb.TRACE[2024-07-21 23:58:58.706][cch$loadFileContent] Trying to load 3 files from cache: [3]: "WRONGB, 2528, 7799".
biodb.TRACE[2024-07-21 23:58:58.708][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2024-07-21 23:58:58.742][loadFileContents] Loaded 3 files from cache: [3]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/WRONGB.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2528.xml, C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7799.xml".
biodb.DEBUG[2024-07-21 23:58:58.745][conn$getEntryContent] 3 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-21 23:58:58.747][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2024-07-21 23:58:58.748][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2024-07-21 23:58:58.750][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:58.752][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:58.753][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:58.760][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:58.761][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:58.763][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:58.764][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:58.767][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:58.769][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:58.770][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.771][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:58.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:58.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.779][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 23:58:58.780][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 23:58:58.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.783][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.784][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 23:58:58.786][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 23:58:58.787][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.788][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.790][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 23:58:58.791][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 23:58:58.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.794][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.795][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 23:58:58.797][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 23:58:58.798][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.799][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.801][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:58.803][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:58.805][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.807][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.809][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 23:58:58.811][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:58.813][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.815][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.817][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:58.819][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:58.821][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.823][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.825][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:58.826][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:58.827][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.829][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.830][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 23:58:58.832][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 23:58:58.833][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.834][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.836][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 23:58:58.837][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 23:58:58.838][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.839][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.841][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:58.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:58.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.847][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:58.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:58.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:58.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:58.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.862][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:58.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:58.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:58.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:58.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:58.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:58.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.886][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:58.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:58.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:58.895][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:58.897][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:58.898][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:58.921][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:58.923][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:58.924][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:58.925][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:58.928][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:58.929][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:58.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.932][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.934][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:58.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:58.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.939][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 23:58:58.941][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 23:58:58.942][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.943][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.945][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 23:58:58.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 23:58:58.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.950][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 23:58:58.951][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 23:58:58.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.954][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.956][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 23:58:58.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 23:58:58.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.961][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 23:58:58.963][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 23:58:58.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.965][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.967][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 23:58:58.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 23:58:58.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.972][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 23:58:58.974][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 23:58:58.975][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.976][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.978][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 23:58:58.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 23:58:58.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.983][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:58.985][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:58.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.987][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.989][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:58.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:58.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.994][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 23:58:58.995][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:58.997][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:58.998][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:58.999][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 23:58:59.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:59.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:59.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:59.005][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:59.006][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:59.007][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:59.009][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:59.010][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:59.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:59.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:59.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:59.016][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:59.017][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:59.018][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:59.020][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:59.021][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:59.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:59.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:59.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:59.027][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 23:58:59.028][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 23:58:59.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:59.031][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:59.033][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 23:58:59.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 23:58:59.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:59.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:59.038][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 23:58:59.039][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 23:58:59.041][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:59.042][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:59.043][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 23:58:59.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 23:58:59.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:59.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:59.049][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:59.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:59.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:59.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:59.054][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:59.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:59.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:59.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:59.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:59.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:59.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:59.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:59.064][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:59.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:59.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:59.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:59.069][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:59.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:59.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:59.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:59.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:59.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:59.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:59.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:59.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:59.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:59.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:59.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:59.090][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:58:59.091][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:59.092][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:59.118][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:59.120][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:59.121][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:59.122][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:58:59.125][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:59.126][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:59.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:59.128][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:59.130][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:59.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:59.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:59.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:59.135][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 23:58:59.136][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 23:58:59.137][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:59.138][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:59.140][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 23:58:59.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 23:58:59.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:59.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:59.145][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 23:58:59.146][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 23:58:59.147][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:59.148][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:59.156][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 23:58:59.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 23:58:59.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:59.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:59.161][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 23:58:59.162][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 23:58:59.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:59.164][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:59.166][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 23:58:59.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 23:58:59.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:59.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:59.171][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 23:58:59.172][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 23:58:59.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:59.174][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:59.175][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 23:58:59.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 23:58:59.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:59.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:59.180][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:59.182][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:59.183][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:59.184][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:59.185][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:59.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:58:59.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:59.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:59.190][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 23:58:59.191][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:59.192][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:59.194][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:59.195][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 23:58:59.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:58:59.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:59.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:59.200][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:59.201][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:59.202][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:59.203][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:59.205][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:59.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:59.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:59.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:59.210][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:59.211][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:59.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:59.213][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:59.215][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:59.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:59.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:59.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:59.220][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 23:58:59.221][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 23:58:59.222][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:59.223][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:59.225][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 23:58:59.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 23:58:59.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:59.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:59.230][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 23:58:59.231][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 23:58:59.233][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:59.234][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:59.235][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 23:58:59.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 23:58:59.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:59.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:59.240][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:59.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:59.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:59.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:59.245][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:59.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:59.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:59.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:59.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:59.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:59.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:59.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:59.255][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:58:59.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:58:59.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:59.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:59.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:59.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:59.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:59.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:59.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:59.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:59.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:59.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:59.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:59.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:59.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:59.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:59.276][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:59.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:59.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:59.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:59.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:59.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:59.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:59.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:59.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:59.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:59.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:59.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:59.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:59.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:59.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:59.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:59.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:59.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:59.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:59.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:59.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:59.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:59.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:59.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:59.305][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:59.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:59.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:59.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:59.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:59.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:59.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:59.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:59.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:58:59.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:58:59.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:59.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:58:59.319][self$createEntryFromContent] Accession numbers: , 2528, 7799.
biodb.DEBUG[2024-07-21 23:58:59.321][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2024-07-21 23:58:59.322][function(conn, opt)] Entries: [4]: "NULL, <environment>, <environment>, <environment>"
biodb.INFO [2024-07-21 23:58:59.359][biodb::testThat]
biodb.INFO [2024-07-21 23:58:59.361][biodb::testThat] Running test function test.peak.table (" The peak table is correct. ").
biodb.INFO [2024-07-21 23:58:59.362][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-21 23:58:59.363][biodb::testThat]
biodb.INFO [2024-07-21 23:58:59.409][biodb::testThat]
biodb.INFO [2024-07-21 23:58:59.410][biodb::testThat] Running test function test.nb.entries (" Nb entries is positive. ").
biodb.INFO [2024-07-21 23:58:59.411][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-21 23:58:59.413][biodb::testThat]
biodb.INFO [2024-07-21 23:58:59.471][biodb::testThat]
biodb.INFO [2024-07-21 23:58:59.472][biodb::testThat] Running test function test.entry.ids (" We can get a list of entry ids. ").
biodb.INFO [2024-07-21 23:58:59.473][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-21 23:58:59.475][biodb::testThat]
biodb.DEBUG[2024-07-21 23:58:59.479][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=1*&searchCategory=CHEBI ID&maximumResults=100&starsCategory=ALL".
biodb.DEBUG[2024-07-21 23:58:59.483][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 23:58:59.485][cch$loadFileContent] Trying to load 1 files from cache: [1]: "aed2cd6d5d221333c0a30a9f8dbc41b4".
biodb.TRACE[2024-07-21 23:58:59.486][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 23:58:59.499][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/aed2cd6d5d221333c0a30a9f8dbc41b4.content".
biodb.TRACE[2024-07-21 23:58:59.523][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:58:59.524][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:58:59.526][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:59.527][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:58:59.528][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:59.529][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:58:59.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:58:59.531][ef$get] fields variable is a list.
biodb.INFO [2024-07-21 23:58:59.534][biodb::testThat]
biodb.INFO [2024-07-21 23:58:59.535][biodb::testThat] Running test function test.annotateMzValues (" annotateMzValues() works correctly. ").
biodb.INFO [2024-07-21 23:58:59.536][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-21 23:58:59.538][biodb::testThat]
biodb.ERROR[2024-07-21 23:58:59.562][conn$annotateMzValues] No column named "mz" was found inside data frame.
biodb.ERROR[2024-07-21 23:58:59.580][ef$checkIsDefined] Field(s) "foo" is/are not defined.
biodb.INFO [2024-07-21 23:58:59.604][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-07-21 23:58:59.606][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2024-07-21 23:58:59.608][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2024-07-21 23:58:59.609][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-07-21 23:58:59.610][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:58:59.611][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:58:59.612][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:59.613][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:59.614][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:59.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-07-21 23:58:59.626][biodb::testContext]
biodb.INFO [2024-07-21 23:58:59.628][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-21 23:58:59.629][biodb::testContext] Test context - Test conversions
biodb.INFO [2024-07-21 23:58:59.630][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-21 23:58:59.631][biodb::testContext]
biodb.INFO [2024-07-21 23:58:59.634][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.12.0.
biodb.DEBUG[2024-07-21 23:58:59.637][self$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.19-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-07-21 23:58:59.642][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-21 23:58:59.643][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-07-21 23:58:59.645][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-07-21 23:58:59.646][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:59.647][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:59.648][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:59.650][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-07-21 23:58:59.651][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-07-21 23:58:59.652][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:59.653][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:59.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:59.655][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-07-21 23:58:59.657][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-07-21 23:58:59.658][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:59.659][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:59.660][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:59.661][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-07-21 23:58:59.663][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-07-21 23:58:59.664][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-07-21 23:58:59.665][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:59.666][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:59.668][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:59.669][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-07-21 23:58:59.670][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-07-21 23:58:59.672][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-07-21 23:58:59.673][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:59.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:59.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:59.677][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-07-21 23:58:59.678][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-07-21 23:58:59.679][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:59.680][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:59.681][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:59.683][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-07-21 23:58:59.684][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-07-21 23:58:59.685][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-07-21 23:58:59.687][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:59.688][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:59.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:59.690][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-07-21 23:58:59.692][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-07-21 23:58:59.693][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:59.694][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:59.695][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:59.697][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-07-21 23:58:59.698][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-07-21 23:58:59.699][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-07-21 23:58:59.700][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:59.701][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:59.703][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:59.704][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-07-21 23:58:59.705][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-07-21 23:58:59.713][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-07-21 23:58:59.714][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-07-21 23:58:59.715][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-07-21 23:58:59.716][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-07-21 23:58:59.717][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:59.718][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:59.719][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:59.721][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-07-21 23:58:59.722][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-07-21 23:58:59.723][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:59.724][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:59.725][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:59.726][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-07-21 23:58:59.728][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-07-21 23:58:59.729][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:59.730][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:59.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:59.732][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-07-21 23:58:59.733][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-07-21 23:58:59.735][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:59.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:59.737][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:59.738][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-07-21 23:58:59.739][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-07-21 23:58:59.741][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:59.742][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:59.743][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:59.744][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-07-21 23:58:59.745][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-07-21 23:58:59.746][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:59.747][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:59.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:59.749][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-07-21 23:58:59.751][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-07-21 23:58:59.754][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-07-21 23:58:59.755][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:59.756][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:59.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:59.759][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-07-21 23:58:59.760][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-07-21 23:58:59.761][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-07-21 23:58:59.762][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:59.763][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:59.764][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:59.766][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-07-21 23:58:59.768][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-21 23:58:59.769][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-07-21 23:58:59.770][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-21 23:58:59.772][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-21 23:58:59.773][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-21 23:58:59.774][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-21 23:58:59.776][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-21 23:58:59.777][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-21 23:58:59.778][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-21 23:58:59.780][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-21 23:58:59.781][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-21 23:58:59.783][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-07-21 23:58:59.784][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-21 23:58:59.785][self$setPropertyValue]
biodb.DEBUG[2024-07-21 23:58:59.786][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-21 23:58:59.787][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-21 23:58:59.787][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-21 23:58:59.787][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-21 23:58:59.787][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-21 23:58:59.787][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-21 23:58:59.789][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-21 23:58:59.790][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 23:58:59.791][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 23:58:59.792][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-21 23:58:59.793][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 23:58:59.794][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 23:58:59.796][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-21 23:58:59.797][self$setPropertyValue]
biodb.DEBUG[2024-07-21 23:58:59.798][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-21 23:58:59.799][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-21 23:58:59.800][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-21 23:58:59.801][self$setPropertyValue]
biodb.DEBUG[2024-07-21 23:58:59.803][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-07-21 23:58:59.805][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-21 23:58:59.806][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-07-21 23:58:59.807][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-21 23:58:59.808][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-21 23:58:59.809][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-21 23:58:59.811][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-21 23:58:59.812][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-21 23:58:59.813][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-21 23:58:59.814][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-21 23:58:59.815][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-21 23:58:59.817][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-21 23:58:59.818][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-07-21 23:58:59.819][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-21 23:58:59.820][self$setPropertyValue]
biodb.DEBUG[2024-07-21 23:58:59.821][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-21 23:58:59.823][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-21 23:58:59.823][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-21 23:58:59.823][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-21 23:58:59.823][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-21 23:58:59.823][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-21 23:58:59.824][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-21 23:58:59.825][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 23:58:59.826][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 23:58:59.827][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-21 23:58:59.828][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 23:58:59.829][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 23:58:59.831][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-21 23:58:59.832][self$setPropertyValue]
biodb.DEBUG[2024-07-21 23:58:59.833][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-21 23:58:59.834][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-21 23:58:59.835][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-21 23:58:59.836][self$setPropertyValue]
biodb.DEBUG[2024-07-21 23:58:59.838][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-07-21 23:58:59.840][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-21 23:58:59.841][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-07-21 23:58:59.842][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-21 23:58:59.843][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-21 23:58:59.845][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-21 23:58:59.846][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-21 23:58:59.847][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-21 23:58:59.848][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-21 23:58:59.849][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-21 23:58:59.851][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-21 23:58:59.852][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-21 23:58:59.853][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-07-21 23:58:59.854][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-21 23:58:59.855][self$setPropertyValue]
biodb.DEBUG[2024-07-21 23:58:59.857][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-21 23:58:59.858][self$setPropertyValue]
biodb.DEBUG[2024-07-21 23:58:59.859][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-21 23:58:59.860][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 23:58:59.861][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 23:58:59.862][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-21 23:58:59.864][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 23:58:59.865][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 23:58:59.866][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-21 23:58:59.867][self$setPropertyValue]
biodb.DEBUG[2024-07-21 23:58:59.868][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-21 23:58:59.869][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-21 23:58:59.871][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-21 23:58:59.872][self$setPropertyValue]
biodb.DEBUG[2024-07-21 23:58:59.873][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-07-21 23:58:59.875][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-21 23:58:59.876][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-07-21 23:58:59.877][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-21 23:58:59.879][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-21 23:58:59.880][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-21 23:58:59.881][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-21 23:58:59.882][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-21 23:58:59.883][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-21 23:58:59.885][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-21 23:58:59.886][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-21 23:58:59.887][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-21 23:58:59.888][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-07-21 23:58:59.889][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-21 23:58:59.891][self$setPropertyValue]
biodb.DEBUG[2024-07-21 23:58:59.892][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-21 23:58:59.893][self$setPropertyValue]
biodb.DEBUG[2024-07-21 23:58:59.894][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-21 23:58:59.895][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 23:58:59.896][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 23:58:59.898][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-21 23:58:59.899][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 23:58:59.900][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 23:58:59.901][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-21 23:58:59.902][self$setPropertyValue]
biodb.DEBUG[2024-07-21 23:58:59.903][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-21 23:58:59.904][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-21 23:58:59.906][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-21 23:58:59.907][self$setPropertyValue]
biodb.DEBUG[2024-07-21 23:58:59.908][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-21 23:58:59.909][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:59.911][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:59.912][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:59.913][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:59.914][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:59.915][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:59.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:59.917][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:59.918][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:59.919][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:59.920][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:59.921][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:59.922][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:59.924][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:59.925][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:59.926][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:59.927][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:59.928][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:59.929][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:59.930][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:59.931][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:59.932][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:59.933][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:59.934][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:59.935][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:59.937][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:59.938][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:59.939][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:59.940][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:59.941][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:59.942][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:59.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:59.944][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:59.945][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:59.947][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:59.948][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:59.949][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:59.950][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:59.951][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:59.952][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:59.953][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:59.954][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:59.955][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:59.957][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:59.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:59.959][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:59.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:59.961][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:59.962][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:59.963][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:59.964][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:59.965][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:59.966][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:59.967][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:59.969][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:59.970][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:59.971][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:59.972][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:59.973][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:59.974][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:59.975][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:59.976][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:59.977][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:59.978][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:59.980][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:59.981][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:59.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:59.983][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:59.984][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:59.985][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:59.986][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:59.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:59.988][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:59.989][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:59.990][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:59.992][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:59.993][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:59.994][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:58:59.995][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:58:59.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:58:59.997][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:58:59.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:58:59.999][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:00.000][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:00.001][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:00.002][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:00.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:00.005][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-07-21 23:59:00.006][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-07-21 23:59:00.008][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-07-21 23:59:00.010][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-07-21 23:59:00.011][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-07-21 23:59:00.013][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-07-21 23:59:00.015][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-07-21 23:59:00.016][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-07-21 23:59:00.018][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-07-21 23:59:00.019][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-07-21 23:59:00.021][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-21 23:59:00.023][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-07-21 23:59:00.024][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-07-21 23:59:00.026][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-07-21 23:59:00.027][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-07-21 23:59:00.029][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-07-21 23:59:00.030][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-07-21 23:59:00.032][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-07-21 23:59:00.033][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-07-21 23:59:00.035][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-07-21 23:59:00.037][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-07-21 23:59:00.038][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-07-21 23:59:00.040][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-07-21 23:59:00.041][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-07-21 23:59:00.043][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-07-21 23:59:00.044][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-07-21 23:59:00.046][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-07-21 23:59:00.048][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-07-21 23:59:00.049][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-07-21 23:59:00.051][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-07-21 23:59:00.052][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-07-21 23:59:00.054][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-07-21 23:59:00.055][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-07-21 23:59:00.057][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-07-21 23:59:00.058][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-07-21 23:59:00.060][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-07-21 23:59:00.062][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-07-21 23:59:00.063][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-07-21 23:59:00.065][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-07-21 23:59:00.066][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-07-21 23:59:00.068][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-07-21 23:59:00.070][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-07-21 23:59:00.071][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-07-21 23:59:00.073][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-07-21 23:59:00.074][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-07-21 23:59:00.076][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-07-21 23:59:00.077][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-07-21 23:59:00.079][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-07-21 23:59:00.081][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-07-21 23:59:00.082][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-07-21 23:59:00.084][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-07-21 23:59:00.085][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-07-21 23:59:00.087][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-07-21 23:59:00.088][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-07-21 23:59:00.090][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-07-21 23:59:00.092][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-07-21 23:59:00.093][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-07-21 23:59:00.095][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-07-21 23:59:00.096][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-07-21 23:59:00.098][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-07-21 23:59:00.099][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-07-21 23:59:00.101][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-07-21 23:59:00.103][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-07-21 23:59:00.104][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-07-21 23:59:00.106][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-07-21 23:59:00.107][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-07-21 23:59:00.115][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-07-21 23:59:00.116][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-07-21 23:59:00.118][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-07-21 23:59:00.120][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-07-21 23:59:00.121][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-07-21 23:59:00.123][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-07-21 23:59:00.124][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-07-21 23:59:00.126][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-07-21 23:59:00.127][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-07-21 23:59:00.129][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-07-21 23:59:00.130][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-07-21 23:59:00.132][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-07-21 23:59:00.134][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-07-21 23:59:00.135][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-07-21 23:59:00.137][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-07-21 23:59:00.138][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-07-21 23:59:00.140][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-07-21 23:59:00.141][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-07-21 23:59:00.144][initialize] This is biodb version 1.12.0.
biodb.DEBUG[2024-07-21 23:59:00.145][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-21 23:59:00.146][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:00.147][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:00.148][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:00.149][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:00.151][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:00.152][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:59:00.153][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:59:00.154][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:00.155][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:00.156][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:00.157][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:00.158][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:00.159][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:59:00.160][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:59:00.161][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:00.162][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:00.164][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:00.165][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:00.166][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:00.167][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:59:00.168][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:59:00.169][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:00.170][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:00.171][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:00.172][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:00.173][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:00.174][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:59:00.175][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:59:00.176][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:00.178][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:00.179][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:00.180][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:00.181][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:00.182][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:59:00.183][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:59:00.184][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:00.185][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:00.186][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:00.187][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:00.188][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:00.189][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:59:00.190][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:59:00.192][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:00.194][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:00.195][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:00.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:00.197][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:00.198][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:59:00.199][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:59:00.200][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:00.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:00.202][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:00.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:00.205][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:00.206][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:59:00.207][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:59:00.208][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:00.209][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:00.210][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:00.211][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:00.212][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:00.213][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:59:00.214][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:59:00.215][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:00.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:00.218][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:00.219][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:00.220][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:00.221][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:59:00.222][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:59:00.223][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:00.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:00.225][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:00.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:00.227][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:00.228][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:59:00.230][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:59:00.231][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:00.232][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:00.233][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:00.234][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:00.235][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:00.236][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:59:00.237][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:59:00.239][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:00.240][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:00.241][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:00.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:00.243][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:00.244][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:59:00.245][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:59:00.246][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:00.247][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:00.248][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:00.250][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:00.251][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:00.252][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:59:00.253][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:59:00.254][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:00.255][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:00.256][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:00.257][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:00.258][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:00.259][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:59:00.261][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:59:00.262][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:00.263][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:00.264][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:00.265][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:00.266][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:00.267][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:59:00.268][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:59:00.269][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:00.270][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:00.272][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:00.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:00.274][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:00.275][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:59:00.276][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:59:00.277][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:00.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:00.280][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:00.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:00.284][biodb$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.19-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2024-07-21 23:59:00.286][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2024-07-21 23:59:00.288][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-21 23:59:00.289][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-07-21 23:59:00.290][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-21 23:59:00.292][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-21 23:59:00.293][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-21 23:59:00.294][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-21 23:59:00.295][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-07-21 23:59:00.296][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2024-07-21 23:59:00.298][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-07-21 23:59:00.299][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-21 23:59:00.300][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-21 23:59:00.301][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2024-07-21 23:59:00.303][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-21 23:59:00.305][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-07-21 23:59:00.305][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2024-07-21 23:59:00.305][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-07-21 23:59:00.305][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-07-21 23:59:00.305][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-07-21 23:59:00.305][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2024-07-21 23:59:00.305][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-07-21 23:59:00.305][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-07-21 23:59:00.305][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2024-07-21 23:59:00.305][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2024-07-21 23:59:00.305][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-07-21 23:59:00.308][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-07-21 23:59:00.310][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-21 23:59:00.310][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-21 23:59:00.310][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-21 23:59:00.312][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-07-21 23:59:00.314][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 23:59:00.315][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 23:59:00.317][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-21 23:59:00.319][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 23:59:00.321][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 23:59:00.323][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-21 23:59:00.325][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-07-21 23:59:00.325][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2024-07-21 23:59:00.327][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-21 23:59:00.328][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-21 23:59:00.330][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-07-21 23:59:00.332][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2024-07-21 23:59:00.332][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2024-07-21 23:59:00.334][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-07-21 23:59:00.337][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-21 23:59:00.340][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2024-07-21 23:59:00.342][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-07-21 23:59:00.345][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-07-21 23:59:00.348][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-07-21 23:59:00.353][super$initialize] Initialize connector chebi.
biodb.DEBUG[2024-07-21 23:59:00.355][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2024-07-21 23:59:00.358][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2024-07-21 23:59:00.361][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2024-07-21 23:59:00.363][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-21 23:59:00.365][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-21 23:59:00.368][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2024-07-21 23:59:00.369][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2024-07-21 23:59:00.373][biodb::testThat]
biodb.INFO [2024-07-21 23:59:00.375][biodb::testThat] Running test function test_chebi_convCasToChebi (" convCasToChebi() works. ").
biodb.INFO [2024-07-21 23:59:00.377][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-21 23:59:00.378][biodb::testThat]
biodb.DEBUG[2024-07-21 23:59:00.385][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2024-07-21 23:59:00.392][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 23:59:00.395][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2024-07-21 23:59:00.398][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 23:59:00.401][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2024-07-21 23:59:00.408][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-07-21 23:59:00.414][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 23:59:00.416][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2024-07-21 23:59:00.419][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 23:59:00.432][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2024-07-21 23:59:00.435][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:59:00.436][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:59:00.438][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:59:00.445][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:00.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:00.447][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:00.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:00.450][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-07-21 23:59:00.454][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 23:59:00.456][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2024-07-21 23:59:00.458][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 23:59:00.470][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2024-07-21 23:59:00.472][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:59:00.474][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:59:00.475][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:59:00.491][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:00.492][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:00.494][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:00.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:00.511][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:59:00.513][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:59:00.514][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:59:00.529][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:00.530][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:00.531][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:00.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:00.539][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-07-21 23:59:00.543][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 23:59:00.545][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2024-07-21 23:59:00.547][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 23:59:00.549][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2024-07-21 23:59:00.551][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:59:00.552][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:59:00.553][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:59:00.569][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:00.571][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:00.572][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:00.573][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:00.576][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-07-21 23:59:00.579][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 23:59:00.581][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2024-07-21 23:59:00.583][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 23:59:00.585][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2024-07-21 23:59:00.587][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:59:00.588][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:59:00.589][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:59:00.600][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:00.602][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:00.603][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:00.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:00.605][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:59:00.606][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:59:00.608][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:59:00.615][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:00.616][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:00.617][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:00.618][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:00.623][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-07-21 23:59:00.626][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 23:59:00.628][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2024-07-21 23:59:00.630][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 23:59:00.632][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2024-07-21 23:59:00.634][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:59:00.635][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:59:00.636][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:59:00.650][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:00.651][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:00.652][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:00.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:00.656][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-07-21 23:59:00.659][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 23:59:00.661][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2024-07-21 23:59:00.662][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 23:59:00.665][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2024-07-21 23:59:00.667][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:59:00.668][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:59:00.669][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:59:00.680][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:00.682][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:00.684][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:00.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:00.691][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=14215-68-0&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-07-21 23:59:00.698][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 23:59:00.700][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70e3912746e7e39b39fbbffe6c90b502".
biodb.TRACE[2024-07-21 23:59:00.702][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 23:59:00.713][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70e3912746e7e39b39fbbffe6c90b502.content".
biodb.DEBUG[2024-07-21 23:59:00.715][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:59:00.717][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:59:00.718][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:59:00.732][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:00.733][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:00.735][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:00.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-07-21 23:59:00.745][biodb::testThat]
biodb.INFO [2024-07-21 23:59:00.747][biodb::testThat] Running test function test_chebi_convInchiToChebi (" convInchiToChebi() works. ").
biodb.INFO [2024-07-21 23:59:00.748][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-21 23:59:00.749][biodb::testThat]
biodb.DEBUG[2024-07-21 23:59:00.753][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=InChI=1S/C15H24/c1-9(2)11-7-8-15(4)12-6-5-10(3)14(15)13(11)12/h5,9,11-14H,6-8H2,1-4H3/t11?,12?,13?,14?,15-/m0/s1&searchCategory=INCHI/INCHI KEY&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-07-21 23:59:00.757][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 23:59:00.759][cch$loadFileContent] Trying to load 1 files from cache: [1]: "64007787a4f3864bb479683766386808".
biodb.TRACE[2024-07-21 23:59:00.760][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 23:59:00.772][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64007787a4f3864bb479683766386808.content".
biodb.DEBUG[2024-07-21 23:59:00.775][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:59:00.776][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:59:00.777][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:59:00.791][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:00.792][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:00.793][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:00.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:00.799][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=VLXDPFLIRFYIME-MWHZVNNOSA-N&searchCategory=INCHI/INCHI KEY&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-07-21 23:59:00.805][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 23:59:00.806][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7547b08b3ebd50447d61026ab0af8d63".
biodb.TRACE[2024-07-21 23:59:00.808][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 23:59:00.812][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7547b08b3ebd50447d61026ab0af8d63.content".
biodb.DEBUG[2024-07-21 23:59:00.814][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:59:00.815][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:59:00.816][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:59:00.823][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:00.825][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:00.826][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:00.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-07-21 23:59:00.835][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-07-21 23:59:00.837][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2024-07-21 23:59:00.839][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2024-07-21 23:59:00.840][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-07-21 23:59:00.841][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:59:00.842][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:59:00.843][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:00.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:00.846][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:00.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-07-21 23:59:00.853][biodb::testContext]
biodb.INFO [2024-07-21 23:59:00.855][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-21 23:59:00.856][biodb::testContext] Test context - Test web services
biodb.INFO [2024-07-21 23:59:00.857][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-21 23:59:00.858][biodb::testContext]
biodb.INFO [2024-07-21 23:59:00.861][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.12.0.
biodb.DEBUG[2024-07-21 23:59:00.864][self$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.19-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-07-21 23:59:00.869][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-21 23:59:00.870][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-07-21 23:59:00.872][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-07-21 23:59:00.873][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:00.874][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:00.875][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:00.876][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-07-21 23:59:00.877][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-07-21 23:59:00.879][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:00.880][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:00.881][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:00.882][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-07-21 23:59:00.883][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-07-21 23:59:00.884][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:00.885][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:00.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:00.888][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-07-21 23:59:00.889][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-07-21 23:59:00.890][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-07-21 23:59:00.891][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:00.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:00.893][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:00.895][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-07-21 23:59:00.896][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-07-21 23:59:00.897][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-07-21 23:59:00.898][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:00.900][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:00.901][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:00.902][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-07-21 23:59:00.903][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-07-21 23:59:00.904][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:00.905][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:00.906][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:00.908][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-07-21 23:59:00.909][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-07-21 23:59:00.910][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-07-21 23:59:00.911][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:00.912][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:00.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:00.915][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-07-21 23:59:00.916][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-07-21 23:59:00.917][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:00.918][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:00.919][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:00.920][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-07-21 23:59:00.922][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-07-21 23:59:00.923][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-07-21 23:59:00.924][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:00.925][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:00.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:00.927][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-07-21 23:59:00.929][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-07-21 23:59:00.930][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-07-21 23:59:00.931][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-07-21 23:59:00.932][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-07-21 23:59:00.933][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-07-21 23:59:00.935][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:00.936][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:00.937][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:00.938][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-07-21 23:59:00.939][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-07-21 23:59:00.940][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:00.941][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:00.942][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:00.944][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-07-21 23:59:00.945][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-07-21 23:59:00.946][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:00.947][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:00.948][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:00.949][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-07-21 23:59:00.951][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-07-21 23:59:00.952][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:00.953][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:00.954][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:00.955][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-07-21 23:59:00.956][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-07-21 23:59:00.957][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:00.958][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:00.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:00.961][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-07-21 23:59:00.962][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-07-21 23:59:00.963][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:00.964][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:00.965][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:00.966][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-07-21 23:59:00.968][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-07-21 23:59:00.972][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-07-21 23:59:00.973][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:00.974][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:00.975][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:00.976][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-07-21 23:59:00.977][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-07-21 23:59:00.979][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-07-21 23:59:00.980][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:00.981][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:00.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:00.983][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-07-21 23:59:00.985][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-21 23:59:00.986][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-07-21 23:59:00.988][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-21 23:59:00.989][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-21 23:59:00.990][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-21 23:59:00.991][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-21 23:59:00.993][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-21 23:59:00.994][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-21 23:59:00.995][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-21 23:59:00.996][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-21 23:59:00.997][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-21 23:59:00.999][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-07-21 23:59:01.000][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-21 23:59:01.001][self$setPropertyValue]
biodb.DEBUG[2024-07-21 23:59:01.002][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-21 23:59:01.003][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-21 23:59:01.003][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-21 23:59:01.003][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-21 23:59:01.003][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-21 23:59:01.003][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-21 23:59:01.005][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-21 23:59:01.006][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 23:59:01.007][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 23:59:01.008][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-21 23:59:01.009][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 23:59:01.010][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 23:59:01.011][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-21 23:59:01.012][self$setPropertyValue]
biodb.DEBUG[2024-07-21 23:59:01.014][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-21 23:59:01.015][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-21 23:59:01.016][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-21 23:59:01.017][self$setPropertyValue]
biodb.DEBUG[2024-07-21 23:59:01.019][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-07-21 23:59:01.020][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-21 23:59:01.022][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-07-21 23:59:01.023][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-21 23:59:01.024][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-21 23:59:01.025][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-21 23:59:01.026][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-21 23:59:01.028][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-21 23:59:01.029][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-21 23:59:01.030][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-21 23:59:01.031][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-21 23:59:01.032][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-21 23:59:01.034][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-07-21 23:59:01.035][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-21 23:59:01.036][self$setPropertyValue]
biodb.DEBUG[2024-07-21 23:59:01.037][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-21 23:59:01.038][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-21 23:59:01.038][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-21 23:59:01.038][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-21 23:59:01.038][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-21 23:59:01.038][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-21 23:59:01.040][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-21 23:59:01.041][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 23:59:01.042][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 23:59:01.043][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-21 23:59:01.044][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 23:59:01.045][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 23:59:01.046][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-21 23:59:01.048][self$setPropertyValue]
biodb.DEBUG[2024-07-21 23:59:01.049][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-21 23:59:01.050][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-21 23:59:01.051][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-21 23:59:01.052][self$setPropertyValue]
biodb.DEBUG[2024-07-21 23:59:01.054][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-07-21 23:59:01.056][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-21 23:59:01.057][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-07-21 23:59:01.058][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-21 23:59:01.059][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-21 23:59:01.060][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-21 23:59:01.062][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-21 23:59:01.063][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-21 23:59:01.064][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-21 23:59:01.065][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-21 23:59:01.066][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-21 23:59:01.068][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-21 23:59:01.069][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-07-21 23:59:01.070][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-21 23:59:01.071][self$setPropertyValue]
biodb.DEBUG[2024-07-21 23:59:01.072][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-21 23:59:01.074][self$setPropertyValue]
biodb.DEBUG[2024-07-21 23:59:01.075][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-21 23:59:01.076][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 23:59:01.077][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 23:59:01.078][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-21 23:59:01.079][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 23:59:01.081][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 23:59:01.082][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-21 23:59:01.083][self$setPropertyValue]
biodb.DEBUG[2024-07-21 23:59:01.084][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-21 23:59:01.085][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-21 23:59:01.086][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-21 23:59:01.088][self$setPropertyValue]
biodb.DEBUG[2024-07-21 23:59:01.089][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-07-21 23:59:01.091][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-21 23:59:01.092][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-07-21 23:59:01.093][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-21 23:59:01.095][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-21 23:59:01.096][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-21 23:59:01.097][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-21 23:59:01.098][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-21 23:59:01.099][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-21 23:59:01.101][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-21 23:59:01.102][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-21 23:59:01.103][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-21 23:59:01.104][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-07-21 23:59:01.105][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-21 23:59:01.106][self$setPropertyValue]
biodb.DEBUG[2024-07-21 23:59:01.108][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-21 23:59:01.109][self$setPropertyValue]
biodb.DEBUG[2024-07-21 23:59:01.110][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-21 23:59:01.111][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 23:59:01.112][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 23:59:01.113][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-21 23:59:01.115][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 23:59:01.116][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 23:59:01.117][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-21 23:59:01.118][self$setPropertyValue]
biodb.DEBUG[2024-07-21 23:59:01.119][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-21 23:59:01.120][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-21 23:59:01.121][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-21 23:59:01.123][self$setPropertyValue]
biodb.DEBUG[2024-07-21 23:59:01.124][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-21 23:59:01.125][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:01.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:01.127][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:01.128][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:01.129][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:01.131][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:01.132][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:01.133][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:01.134][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:01.141][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:01.142][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:01.143][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:01.144][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:01.145][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:01.146][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:01.147][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:01.148][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:01.149][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:01.150][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:01.151][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:01.153][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:01.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:01.155][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:01.156][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:01.157][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:01.158][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:01.159][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:01.160][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:01.161][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:01.162][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:01.163][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:01.164][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:01.165][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:01.167][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:01.168][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:01.169][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:01.170][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:01.171][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:01.172][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:01.173][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:01.174][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:01.175][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:01.176][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:01.177][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:01.178][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:01.180][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:01.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:01.182][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:01.183][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:01.184][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:01.185][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:01.186][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:01.187][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:01.188][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:01.189][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:01.190][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:01.191][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:01.192][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:01.193][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:01.194][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:01.195][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:01.197][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:01.198][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:01.199][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:01.200][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:01.201][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:01.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:01.203][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:01.204][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:01.205][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:01.206][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:01.207][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:01.208][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:01.209][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:01.210][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:01.211][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:01.212][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:01.214][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:01.215][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:01.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:01.217][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:01.218][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:01.219][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:01.220][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:01.221][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:01.222][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:01.223][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:01.224][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-07-21 23:59:01.226][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-07-21 23:59:01.227][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-07-21 23:59:01.229][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-07-21 23:59:01.231][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-07-21 23:59:01.232][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-07-21 23:59:01.234][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-07-21 23:59:01.235][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-07-21 23:59:01.237][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-07-21 23:59:01.238][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-07-21 23:59:01.240][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-21 23:59:01.241][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-07-21 23:59:01.244][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-07-21 23:59:01.245][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-07-21 23:59:01.247][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-07-21 23:59:01.248][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-07-21 23:59:01.250][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-07-21 23:59:01.251][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-07-21 23:59:01.253][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-07-21 23:59:01.255][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-07-21 23:59:01.256][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-07-21 23:59:01.258][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-07-21 23:59:01.260][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-07-21 23:59:01.262][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-07-21 23:59:01.264][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-07-21 23:59:01.266][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-07-21 23:59:01.267][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-07-21 23:59:01.269][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-07-21 23:59:01.270][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-07-21 23:59:01.272][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-07-21 23:59:01.274][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-07-21 23:59:01.275][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-07-21 23:59:01.277][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-07-21 23:59:01.278][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-07-21 23:59:01.280][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-07-21 23:59:01.281][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-07-21 23:59:01.283][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-07-21 23:59:01.284][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-07-21 23:59:01.286][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-07-21 23:59:01.288][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-07-21 23:59:01.289][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-07-21 23:59:01.291][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-07-21 23:59:01.292][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-07-21 23:59:01.294][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-07-21 23:59:01.295][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-07-21 23:59:01.297][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-07-21 23:59:01.299][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-07-21 23:59:01.300][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-07-21 23:59:01.302][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-07-21 23:59:01.303][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-07-21 23:59:01.305][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-07-21 23:59:01.307][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-07-21 23:59:01.308][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-07-21 23:59:01.310][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-07-21 23:59:01.311][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-07-21 23:59:01.313][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-07-21 23:59:01.314][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-07-21 23:59:01.316][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-07-21 23:59:01.318][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-07-21 23:59:01.319][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-07-21 23:59:01.321][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-07-21 23:59:01.322][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-07-21 23:59:01.324][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-07-21 23:59:01.325][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-07-21 23:59:01.327][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-07-21 23:59:01.328][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-07-21 23:59:01.330][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-07-21 23:59:01.332][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-07-21 23:59:01.333][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-07-21 23:59:01.335][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-07-21 23:59:01.336][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-07-21 23:59:01.338][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-07-21 23:59:01.339][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-07-21 23:59:01.341][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-07-21 23:59:01.343][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-07-21 23:59:01.344][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-07-21 23:59:01.346][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-07-21 23:59:01.347][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-07-21 23:59:01.349][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-07-21 23:59:01.350][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-07-21 23:59:01.352][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-07-21 23:59:01.353][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-07-21 23:59:01.355][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-07-21 23:59:01.357][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-07-21 23:59:01.359][initialize] This is biodb version 1.12.0.
biodb.DEBUG[2024-07-21 23:59:01.360][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-21 23:59:01.361][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:01.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:01.363][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:01.365][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:01.366][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:01.367][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:59:01.368][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:59:01.369][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:01.370][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:01.371][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:01.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:01.373][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:01.374][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:59:01.376][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:59:01.377][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:01.378][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:01.379][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:01.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:01.381][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:01.382][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:59:01.383][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:59:01.384][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:01.385][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:01.386][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:01.387][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:01.389][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:01.390][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:59:01.391][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:59:01.392][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:01.393][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:01.394][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:01.395][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:01.396][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:01.397][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:59:01.398][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:59:01.399][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:01.400][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:01.402][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:01.403][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:01.404][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:01.405][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:59:01.406][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:59:01.407][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:01.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:01.409][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:01.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:01.412][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:01.413][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:59:01.414][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:59:01.415][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:01.416][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:01.417][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:01.418][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:01.419][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:01.420][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:59:01.421][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:59:01.422][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:01.423][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:01.425][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:01.426][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:01.427][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:01.428][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:59:01.429][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:59:01.430][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:01.431][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:01.432][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:01.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:01.435][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:01.436][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:59:01.437][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:59:01.438][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:01.439][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:01.440][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:01.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:01.442][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:01.443][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:59:01.444][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:59:01.446][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:01.447][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:01.448][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:01.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:01.450][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:01.451][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:59:01.452][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:59:01.453][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:01.454][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:01.455][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:01.456][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:01.458][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:01.459][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:59:01.460][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:59:01.461][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:01.462][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:01.463][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:01.464][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:01.465][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:01.466][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:59:01.467][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:59:01.469][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:01.470][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:01.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:01.472][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:01.473][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:01.474][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:59:01.475][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:59:01.476][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:01.477][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:01.478][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:01.480][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:01.481][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:01.482][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:59:01.483][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:59:01.484][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:01.485][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:01.486][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:01.487][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:01.488][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:01.489][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:59:01.491][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:59:01.492][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:01.493][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:01.494][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:01.495][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:01.498][biodb$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.19-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2024-07-21 23:59:01.500][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2024-07-21 23:59:01.502][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-21 23:59:01.503][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-07-21 23:59:01.504][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-21 23:59:01.505][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-21 23:59:01.507][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-21 23:59:01.509][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-21 23:59:01.511][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-07-21 23:59:01.513][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2024-07-21 23:59:01.515][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-07-21 23:59:01.517][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-21 23:59:01.519][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-21 23:59:01.521][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2024-07-21 23:59:01.522][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-21 23:59:01.524][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-07-21 23:59:01.524][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2024-07-21 23:59:01.524][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-07-21 23:59:01.524][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-07-21 23:59:01.524][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-07-21 23:59:01.524][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2024-07-21 23:59:01.524][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-07-21 23:59:01.524][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-07-21 23:59:01.524][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2024-07-21 23:59:01.524][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2024-07-21 23:59:01.524][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-07-21 23:59:01.525][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-07-21 23:59:01.526][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-21 23:59:01.526][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-21 23:59:01.526][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-21 23:59:01.527][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-07-21 23:59:01.529][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 23:59:01.530][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 23:59:01.531][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-21 23:59:01.532][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 23:59:01.533][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 23:59:01.534][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-21 23:59:01.542][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-07-21 23:59:01.542][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2024-07-21 23:59:01.543][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-21 23:59:01.544][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-21 23:59:01.546][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-07-21 23:59:01.547][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2024-07-21 23:59:01.547][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2024-07-21 23:59:01.548][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-07-21 23:59:01.550][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-21 23:59:01.552][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2024-07-21 23:59:01.553][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-07-21 23:59:01.555][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-07-21 23:59:01.557][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-07-21 23:59:01.560][super$initialize] Initialize connector chebi.
biodb.DEBUG[2024-07-21 23:59:01.562][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2024-07-21 23:59:01.563][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2024-07-21 23:59:01.565][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2024-07-21 23:59:01.566][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-21 23:59:01.567][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-21 23:59:01.569][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2024-07-21 23:59:01.570][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2024-07-21 23:59:01.572][biodb::testThat]
biodb.INFO [2024-07-21 23:59:01.574][biodb::testThat] Running test function test.chebi.wsGetLiteEntity (" Web service getLiteEntity works fine. ").
biodb.INFO [2024-07-21 23:59:01.575][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-21 23:59:01.576][biodb::testThat]
biodb.DEBUG[2024-07-21 23:59:01.579][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2024-07-21 23:59:01.584][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 23:59:01.586][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2024-07-21 23:59:01.587][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 23:59:01.590][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2024-07-21 23:59:01.593][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI ID&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-07-21 23:59:01.598][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 23:59:01.600][cch$loadFileContent] Trying to load 1 files from cache: [1]: "04c26672f8368e71348af4b34238160e".
biodb.TRACE[2024-07-21 23:59:01.603][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 23:59:01.614][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/04c26672f8368e71348af4b34238160e.content".
biodb.INFO [2024-07-21 23:59:01.625][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-07-21 23:59:01.627][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2024-07-21 23:59:01.628][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2024-07-21 23:59:01.630][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-07-21 23:59:01.631][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:59:01.632][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:59:01.633][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:01.634][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:01.635][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:01.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-07-21 23:59:01.641][biodb::testContext]
biodb.INFO [2024-07-21 23:59:01.642][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-21 23:59:01.644][biodb::testContext] Test context - Non regression tests
biodb.INFO [2024-07-21 23:59:01.645][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-21 23:59:01.646][biodb::testContext]
biodb.INFO [2024-07-21 23:59:01.649][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.12.0.
biodb.DEBUG[2024-07-21 23:59:01.651][self$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.19-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-07-21 23:59:01.656][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-21 23:59:01.658][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-07-21 23:59:01.659][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-07-21 23:59:01.660][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:01.661][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:01.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:01.663][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-07-21 23:59:01.665][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-07-21 23:59:01.666][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:01.667][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:01.668][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:01.669][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-07-21 23:59:01.670][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-07-21 23:59:01.671][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:01.673][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:01.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:01.675][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-07-21 23:59:01.676][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-07-21 23:59:01.677][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-07-21 23:59:01.679][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:01.680][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:01.681][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:01.682][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-07-21 23:59:01.683][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-07-21 23:59:01.684][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-07-21 23:59:01.685][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:01.686][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:01.688][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:01.689][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-07-21 23:59:01.690][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-07-21 23:59:01.691][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:01.692][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:01.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:01.695][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-07-21 23:59:01.696][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-07-21 23:59:01.697][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-07-21 23:59:01.698][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:01.699][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:01.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:01.702][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-07-21 23:59:01.703][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-07-21 23:59:01.704][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:01.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:01.706][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:01.707][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-07-21 23:59:01.709][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-07-21 23:59:01.710][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-07-21 23:59:01.711][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:01.712][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:01.713][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:01.714][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-07-21 23:59:01.716][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-07-21 23:59:01.717][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-07-21 23:59:01.718][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-07-21 23:59:01.719][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-07-21 23:59:01.721][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-07-21 23:59:01.722][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:01.723][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:01.724][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:01.725][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-07-21 23:59:01.727][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-07-21 23:59:01.728][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:01.729][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:01.730][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:01.731][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-07-21 23:59:01.732][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-07-21 23:59:01.734][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:01.735][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:01.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:01.737][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-07-21 23:59:01.738][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-07-21 23:59:01.739][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:01.741][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:01.742][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:01.743][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-07-21 23:59:01.744][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-07-21 23:59:01.745][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:01.746][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:01.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:01.749][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-07-21 23:59:01.750][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-07-21 23:59:01.751][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:01.752][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:01.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:01.754][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-07-21 23:59:01.756][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-07-21 23:59:01.759][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-07-21 23:59:01.760][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:01.761][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:01.762][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:01.764][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-07-21 23:59:01.765][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-07-21 23:59:01.766][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-07-21 23:59:01.767][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:01.768][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:01.769][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:01.771][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-07-21 23:59:01.773][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-21 23:59:01.774][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-07-21 23:59:01.775][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-21 23:59:01.776][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-21 23:59:01.778][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-21 23:59:01.779][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-21 23:59:01.780][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-21 23:59:01.781][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-21 23:59:01.782][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-21 23:59:01.784][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-21 23:59:01.785][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-21 23:59:01.786][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-07-21 23:59:01.787][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-21 23:59:01.789][self$setPropertyValue]
biodb.DEBUG[2024-07-21 23:59:01.790][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-21 23:59:01.791][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-21 23:59:01.791][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-21 23:59:01.791][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-21 23:59:01.791][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-21 23:59:01.791][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-21 23:59:01.792][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-21 23:59:01.794][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 23:59:01.795][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 23:59:01.796][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-21 23:59:01.797][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 23:59:01.798][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 23:59:01.799][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-21 23:59:01.800][self$setPropertyValue]
biodb.DEBUG[2024-07-21 23:59:01.802][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-21 23:59:01.803][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-21 23:59:01.804][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-21 23:59:01.805][self$setPropertyValue]
biodb.DEBUG[2024-07-21 23:59:01.807][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-07-21 23:59:01.809][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-21 23:59:01.810][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-07-21 23:59:01.811][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-21 23:59:01.812][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-21 23:59:01.814][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-21 23:59:01.815][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-21 23:59:01.816][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-21 23:59:01.817][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-21 23:59:01.818][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-21 23:59:01.820][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-21 23:59:01.821][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-21 23:59:01.823][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-07-21 23:59:01.825][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-21 23:59:01.828][self$setPropertyValue]
biodb.DEBUG[2024-07-21 23:59:01.830][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-21 23:59:01.832][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-21 23:59:01.832][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-21 23:59:01.832][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-21 23:59:01.832][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-21 23:59:01.832][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-21 23:59:01.833][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-21 23:59:01.835][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 23:59:01.837][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 23:59:01.839][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-21 23:59:01.840][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 23:59:01.842][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 23:59:01.844][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-21 23:59:01.846][self$setPropertyValue]
biodb.DEBUG[2024-07-21 23:59:01.848][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-21 23:59:01.849][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-21 23:59:01.851][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-21 23:59:01.853][self$setPropertyValue]
biodb.DEBUG[2024-07-21 23:59:01.855][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-07-21 23:59:01.858][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-21 23:59:01.860][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-07-21 23:59:01.862][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-21 23:59:01.864][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-21 23:59:01.865][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-21 23:59:01.866][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-21 23:59:01.868][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-21 23:59:01.869][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-21 23:59:01.871][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-21 23:59:01.872][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-21 23:59:01.873][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-21 23:59:01.874][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-07-21 23:59:01.876][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-21 23:59:01.877][self$setPropertyValue]
biodb.DEBUG[2024-07-21 23:59:01.878][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-21 23:59:01.880][self$setPropertyValue]
biodb.DEBUG[2024-07-21 23:59:01.881][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-21 23:59:01.882][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 23:59:01.883][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 23:59:01.884][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-21 23:59:01.886][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 23:59:01.887][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 23:59:01.888][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-21 23:59:01.889][self$setPropertyValue]
biodb.DEBUG[2024-07-21 23:59:01.891][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-21 23:59:01.892][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-21 23:59:01.893][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-21 23:59:01.894][self$setPropertyValue]
biodb.DEBUG[2024-07-21 23:59:01.896][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-07-21 23:59:01.899][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-21 23:59:01.901][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-07-21 23:59:01.903][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-21 23:59:01.905][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-21 23:59:01.907][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-21 23:59:01.909][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-21 23:59:01.911][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-21 23:59:01.913][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-21 23:59:01.915][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-21 23:59:01.917][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-21 23:59:01.919][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-21 23:59:01.921][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-07-21 23:59:01.923][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-21 23:59:01.925][self$setPropertyValue]
biodb.DEBUG[2024-07-21 23:59:01.927][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-21 23:59:01.929][self$setPropertyValue]
biodb.DEBUG[2024-07-21 23:59:01.931][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-21 23:59:01.933][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 23:59:01.935][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 23:59:01.937][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-21 23:59:01.939][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 23:59:01.941][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 23:59:01.942][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-21 23:59:01.945][self$setPropertyValue]
biodb.DEBUG[2024-07-21 23:59:01.946][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-21 23:59:01.948][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-21 23:59:01.950][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-21 23:59:01.952][self$setPropertyValue]
biodb.DEBUG[2024-07-21 23:59:01.955][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-21 23:59:01.957][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:01.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:01.960][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:01.962][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:01.964][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:01.966][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:01.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:01.970][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:01.971][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:01.973][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:01.975][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:01.977][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:01.979][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:01.981][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:01.983][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:01.985][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:01.986][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:01.988][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:01.990][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:01.992][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:01.994][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:01.996][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:01.997][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:01.999][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:02.001][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:02.003][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:02.005][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:02.007][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:02.008][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:02.010][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:02.012][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:02.014][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:02.015][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:02.017][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:02.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:02.021][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:02.023][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:02.025][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:02.027][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:02.028][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:02.030][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:02.032][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:02.034][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:02.036][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:02.038][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:02.040][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:02.042][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:02.043][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:02.045][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:02.047][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:02.058][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:02.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:02.063][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:02.065][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:02.067][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:02.068][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:02.070][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:02.072][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:02.074][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:02.076][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:02.078][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:02.080][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:02.082][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:02.083][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:02.085][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:02.087][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:02.089][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:02.091][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:02.092][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:02.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:02.096][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:02.097][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:02.099][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:02.101][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:02.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:02.104][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:02.106][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:02.108][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:02.109][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:02.111][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:02.113][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:02.114][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:02.116][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:02.118][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:02.120][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:02.122][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:02.124][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:02.126][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-07-21 23:59:02.128][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-07-21 23:59:02.130][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-07-21 23:59:02.132][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-07-21 23:59:02.133][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-07-21 23:59:02.135][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-07-21 23:59:02.137][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-07-21 23:59:02.138][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-07-21 23:59:02.140][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-07-21 23:59:02.142][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-07-21 23:59:02.143][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-21 23:59:02.145][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-07-21 23:59:02.146][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-07-21 23:59:02.148][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-07-21 23:59:02.150][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-07-21 23:59:02.151][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-07-21 23:59:02.153][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-07-21 23:59:02.154][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-07-21 23:59:02.156][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-07-21 23:59:02.157][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-07-21 23:59:02.159][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-07-21 23:59:02.161][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-07-21 23:59:02.162][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-07-21 23:59:02.164][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-07-21 23:59:02.165][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-07-21 23:59:02.167][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-07-21 23:59:02.169][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-07-21 23:59:02.170][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-07-21 23:59:02.172][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-07-21 23:59:02.173][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-07-21 23:59:02.175][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-07-21 23:59:02.177][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-07-21 23:59:02.178][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-07-21 23:59:02.180][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-07-21 23:59:02.182][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-07-21 23:59:02.183][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-07-21 23:59:02.185][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-07-21 23:59:02.187][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-07-21 23:59:02.188][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-07-21 23:59:02.190][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-07-21 23:59:02.192][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-07-21 23:59:02.193][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-07-21 23:59:02.195][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-07-21 23:59:02.197][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-07-21 23:59:02.198][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-07-21 23:59:02.200][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-07-21 23:59:02.202][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-07-21 23:59:02.204][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-07-21 23:59:02.205][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-07-21 23:59:02.207][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-07-21 23:59:02.209][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-07-21 23:59:02.210][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-07-21 23:59:02.212][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-07-21 23:59:02.214][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-07-21 23:59:02.215][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-07-21 23:59:02.217][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-07-21 23:59:02.219][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-07-21 23:59:02.220][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-07-21 23:59:02.222][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-07-21 23:59:02.224][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-07-21 23:59:02.226][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-07-21 23:59:02.229][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-07-21 23:59:02.232][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-07-21 23:59:02.234][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-07-21 23:59:02.237][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-07-21 23:59:02.239][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-07-21 23:59:02.242][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-07-21 23:59:02.244][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-07-21 23:59:02.247][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-07-21 23:59:02.249][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-07-21 23:59:02.252][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-07-21 23:59:02.254][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-07-21 23:59:02.257][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-07-21 23:59:02.259][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-07-21 23:59:02.262][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-07-21 23:59:02.265][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-07-21 23:59:02.267][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-07-21 23:59:02.270][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-07-21 23:59:02.273][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-07-21 23:59:02.275][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-07-21 23:59:02.278][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-07-21 23:59:02.280][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-07-21 23:59:02.283][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-07-21 23:59:02.286][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-07-21 23:59:02.289][initialize] This is biodb version 1.12.0.
biodb.DEBUG[2024-07-21 23:59:02.291][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-21 23:59:02.293][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:02.295][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:02.297][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:02.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:02.300][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:02.302][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:59:02.304][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:59:02.306][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:02.308][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:02.309][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:02.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:02.313][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:02.315][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:59:02.317][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:59:02.318][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:02.320][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:02.322][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:02.324][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:02.326][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:02.327][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:59:02.329][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:59:02.331][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:02.333][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:02.335][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:02.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:02.338][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:02.340][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:59:02.342][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:59:02.344][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:02.345][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:02.347][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:02.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:02.351][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:02.352][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:59:02.353][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:59:02.355][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:02.356][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:02.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:02.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:02.359][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:02.361][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:59:02.362][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:59:02.363][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:02.365][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:02.366][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:02.368][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:02.369][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:02.370][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:59:02.372][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:59:02.373][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:02.374][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:02.376][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:02.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:02.378][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:02.379][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:59:02.380][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:59:02.382][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:02.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:02.384][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:02.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:02.386][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:02.387][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:59:02.389][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:59:02.390][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:02.391][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:02.392][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:02.393][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:02.395][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:02.396][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:59:02.397][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:59:02.398][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:02.400][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:02.402][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:02.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:02.405][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:02.406][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:59:02.408][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:59:02.409][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:02.410][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:02.411][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:02.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:02.414][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:02.415][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:59:02.416][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:59:02.417][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:02.418][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:02.419][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:02.421][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:02.422][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:02.423][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:59:02.424][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:59:02.425][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:02.426][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:02.427][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:02.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:02.430][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:02.432][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:59:02.433][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:59:02.434][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:02.435][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:02.436][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:02.438][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:02.439][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:02.440][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:59:02.441][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:59:02.443][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:02.444][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:02.446][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:02.447][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:02.448][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:02.449][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:59:02.450][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:59:02.452][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:02.453][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:02.455][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:02.457][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:02.458][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 23:59:02.460][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:59:02.461][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:59:02.462][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:02.463][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:02.464][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:02.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 23:59:02.468][biodb$loadDefinitions] Load definitions from file "E:/biocbuild/bbs-3.19-bioc/R/library/biodbChebi/definitions.yml".
biodb.DEBUG[2024-07-21 23:59:02.470][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2024-07-21 23:59:02.472][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-21 23:59:02.474][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-07-21 23:59:02.475][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-21 23:59:02.476][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-21 23:59:02.477][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-21 23:59:02.479][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-21 23:59:02.480][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-07-21 23:59:02.481][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2024-07-21 23:59:02.482][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-07-21 23:59:02.484][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-21 23:59:02.485][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-21 23:59:02.486][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2024-07-21 23:59:02.487][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-21 23:59:02.488][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-07-21 23:59:02.488][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2024-07-21 23:59:02.488][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-07-21 23:59:02.488][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-07-21 23:59:02.488][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-07-21 23:59:02.488][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2024-07-21 23:59:02.488][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-07-21 23:59:02.488][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-07-21 23:59:02.488][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2024-07-21 23:59:02.488][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2024-07-21 23:59:02.488][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-07-21 23:59:02.490][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-07-21 23:59:02.491][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-21 23:59:02.491][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-21 23:59:02.491][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-21 23:59:02.492][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-07-21 23:59:02.494][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 23:59:02.495][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 23:59:02.496][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-21 23:59:02.497][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 23:59:02.498][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 23:59:02.499][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-21 23:59:02.501][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-07-21 23:59:02.501][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2024-07-21 23:59:02.502][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-21 23:59:02.503][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-21 23:59:02.504][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-07-21 23:59:02.505][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2024-07-21 23:59:02.505][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2024-07-21 23:59:02.507][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-07-21 23:59:02.509][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-21 23:59:02.511][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2024-07-21 23:59:02.512][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-07-21 23:59:02.514][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-07-21 23:59:02.516][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-07-21 23:59:02.520][super$initialize] Initialize connector chebi.
biodb.DEBUG[2024-07-21 23:59:02.521][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2024-07-21 23:59:02.522][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2024-07-21 23:59:02.524][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2024-07-21 23:59:02.526][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-21 23:59:02.527][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-21 23:59:02.529][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2024-07-21 23:59:02.530][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2024-07-21 23:59:02.532][biodb::testThat]
biodb.INFO [2024-07-21 23:59:02.533][biodb::testThat] Running test function test.chebi.encoding.issue.in.xml (" ChEBI encoding issue in XML is handled. ").
biodb.INFO [2024-07-21 23:59:02.534][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-21 23:59:02.535][biodb::testThat]
biodb.DEBUG[2024-07-21 23:59:02.540][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2024-07-21 23:59:02.555][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 23:59:02.557][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2024-07-21 23:59:02.559][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 23:59:02.561][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2024-07-21 23:59:02.566][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI ID&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-07-21 23:59:02.570][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 23:59:02.572][cch$loadFileContent] Trying to load 1 files from cache: [1]: "04c26672f8368e71348af4b34238160e".
biodb.TRACE[2024-07-21 23:59:02.574][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 23:59:02.576][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/04c26672f8368e71348af4b34238160e.content".
biodb.DEBUG[2024-07-21 23:59:02.595][private$loadEntries] Creating entries from ids [1]: "2571".
biodb.DEBUG[2024-07-21 23:59:02.596][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-21 23:59:02.598][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2571".
biodb.TRACE[2024-07-21 23:59:02.600][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 23:59:02.621][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2571.xml".
biodb.DEBUG[2024-07-21 23:59:02.623][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-21 23:59:02.624][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-21 23:59:02.626][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-21 23:59:02.628][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 23:59:02.629][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:59:02.630][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:59:02.641][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:02.642][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:02.644][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:02.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 23:59:02.650][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:59:02.651][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:59:02.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:59:02.654][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:59:02.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:59:02.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:59:02.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:59:02.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:59:02.671][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 23:59:02.672][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 23:59:02.674][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:59:02.675][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:59:02.677][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 23:59:02.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 23:59:02.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:59:02.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:59:02.682][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 23:59:02.683][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 23:59:02.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:59:02.685][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:59:02.687][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 23:59:02.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 23:59:02.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:59:02.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:59:02.692][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 23:59:02.694][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 23:59:02.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:59:02.696][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:59:02.698][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 23:59:02.699][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 23:59:02.700][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:59:02.701][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:59:02.703][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:59:02.705][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:59:02.706][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:59:02.707][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:59:02.709][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:59:02.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 23:59:02.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:59:02.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:59:02.714][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 23:59:02.716][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:59:02.717][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:59:02.718][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:59:02.720][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 23:59:02.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 23:59:02.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:59:02.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:59:02.725][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:59:02.727][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:59:02.728][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:59:02.729][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:59:02.731][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:59:02.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 23:59:02.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:59:02.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:59:02.736][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:59:02.737][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:59:02.738][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:59:02.740][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:59:02.743][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 23:59:02.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 23:59:02.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:59:02.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:59:02.748][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 23:59:02.749][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 23:59:02.750][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:59:02.751][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:59:02.753][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 23:59:02.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 23:59:02.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:59:02.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:59:02.759][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 23:59:02.760][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 23:59:02.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:59:02.763][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:59:02.765][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 23:59:02.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 23:59:02.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:59:02.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:59:02.770][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:59:02.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:59:02.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:59:02.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:59:02.776][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:59:02.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:59:02.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:59:02.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:59:02.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:59:02.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:59:02.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:59:02.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:59:02.786][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 23:59:02.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 23:59:02.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:59:02.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:59:02.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:59:02.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:59:02.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:59:02.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:59:02.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:59:02.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:59:02.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:59:02.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:59:02.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:59:02.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:59:02.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:59:02.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:59:02.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:59:02.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:59:02.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:59:02.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:59:02.812][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:59:02.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:59:02.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:59:02.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 23:59:02.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 23:59:02.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 23:59:02.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 23:59:02.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 23:59:02.822][self$createEntryFromContent] Accession numbers: 2571.
biodb.INFO [2024-07-21 23:59:02.829][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-07-21 23:59:02.831][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2024-07-21 23:59:02.832][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2024-07-21 23:59:02.834][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-07-21 23:59:02.835][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 23:59:02.837][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 23:59:02.839][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 23:59:02.841][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 23:59:02.842][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 23:59:02.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 358 ]
>
> proc.time()
user system elapsed
20.09 0.81 26.25
biodbChebi.Rcheck/biodbChebi-Ex.timings
| name | user | system | elapsed | |
| ChebiConn | 4.19 | 3.02 | 180.05 | |
| ChebiEntry | 0.76 | 0.00 | 0.77 | |