Pierrick Roger
| Snapshot Date: 2024-07-21 14:00 -0400 (Sun, 21 Jul 2024) |
| git_url: https://git.bioconductor.org/packages/biodbChebi |
| git_branch: RELEASE_3_19 |
| git_last_commit: fad38a4 |
| git_last_commit_date: 2024-04-30 11:37:31 -0400 (Tue, 30 Apr 2024) |
| Back to Multiple platform build/check report for BioC 3.19: simplified long |
|
This page was generated on 2024-07-24 09:05 -0400 (Wed, 24 Jul 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4747 |
| palomino7 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4489 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4518 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4467 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 200/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| biodbChebi 1.10.0 (landing page) Pierrick Roger
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
|
To the developers/maintainers of the biodbChebi package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbChebi.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: biodbChebi |
| Version: 1.10.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biodbChebi.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biodbChebi_1.10.0.tar.gz |
| StartedAt: 2024-07-22 01:26:55 -0400 (Mon, 22 Jul 2024) |
| EndedAt: 2024-07-22 01:31:23 -0400 (Mon, 22 Jul 2024) |
| EllapsedTime: 268.8 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: biodbChebi.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biodbChebi.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biodbChebi_1.10.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.19-bioc/meat/biodbChebi.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: x86_64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.5
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘biodbChebi/DESCRIPTION’ ... OK
* this is package ‘biodbChebi’ version ‘1.10.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbChebi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
ChebiConn 4.46 2.493 23.623
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
biodbChebi.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL biodbChebi ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’ * installing *source* package ‘biodbChebi’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (biodbChebi)
biodbChebi.Rcheck/tests/testthat.Rout
R version 4.4.1 (2024-06-14) -- "Race for Your Life"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2024-07-22 01:30:02.188][biodb::testContext]
biodb.INFO [2024-07-22 01:30:02.196][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-22 01:30:02.199][biodb::testContext] Test context - Generic tests
biodb.INFO [2024-07-22 01:30:02.201][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-22 01:30:02.204][biodb::testContext]
biodb.INFO [2024-07-22 01:30:02.231][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.12.0.
biodb.DEBUG[2024-07-22 01:30:02.236][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-07-22 01:30:02.277][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-22 01:30:02.294][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-07-22 01:30:02.297][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-07-22 01:30:02.310][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:02.312][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:02.315][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:02.335][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-07-22 01:30:02.648][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-07-22 01:30:02.651][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:02.653][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:02.655][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:02.685][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-07-22 01:30:02.711][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-07-22 01:30:02.714][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:02.716][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:02.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:02.733][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-07-22 01:30:02.747][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-07-22 01:30:02.750][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-07-22 01:30:02.770][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:02.772][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:02.774][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:02.776][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-07-22 01:30:02.778][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-07-22 01:30:02.780][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-07-22 01:30:02.782][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:02.784][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:02.785][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:02.789][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-07-22 01:30:02.792][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-07-22 01:30:02.793][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:02.795][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:02.797][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:02.799][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-07-22 01:30:02.801][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-07-22 01:30:02.804][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-07-22 01:30:02.806][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:02.808][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:02.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:02.813][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-07-22 01:30:02.815][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-07-22 01:30:02.817][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:02.823][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:02.825][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:02.827][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-07-22 01:30:02.830][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-07-22 01:30:02.839][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-07-22 01:30:02.841][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:02.842][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:02.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:02.845][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-07-22 01:30:02.846][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-07-22 01:30:02.847][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-07-22 01:30:02.848][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-07-22 01:30:02.853][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-07-22 01:30:02.855][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-07-22 01:30:02.857][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:02.859][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:02.860][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:02.868][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-07-22 01:30:02.870][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-07-22 01:30:02.873][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:02.874][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:02.877][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:02.883][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-07-22 01:30:02.887][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-07-22 01:30:02.889][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:02.890][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:02.898][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:02.900][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-07-22 01:30:02.902][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-07-22 01:30:02.903][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:02.905][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:02.906][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:02.911][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-07-22 01:30:02.914][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-07-22 01:30:02.916][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:02.918][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:02.919][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:02.921][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-07-22 01:30:02.923][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-07-22 01:30:02.926][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:02.928][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:02.930][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:02.932][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-07-22 01:30:02.934][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-07-22 01:30:03.083][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-07-22 01:30:03.085][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:03.087][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:03.090][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:03.095][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-07-22 01:30:03.097][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-07-22 01:30:03.099][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-07-22 01:30:03.101][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:03.102][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:03.103][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:03.110][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-07-22 01:30:03.216][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-22 01:30:03.260][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-07-22 01:30:03.261][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-22 01:30:03.263][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-22 01:30:03.265][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-22 01:30:03.267][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-22 01:30:03.270][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-22 01:30:03.272][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-22 01:30:03.273][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-22 01:30:03.275][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-22 01:30:03.276][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-22 01:30:03.277][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-07-22 01:30:03.279][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-22 01:30:03.280][self$setPropertyValue]
biodb.DEBUG[2024-07-22 01:30:03.281][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-22 01:30:03.283][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-22 01:30:03.283][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-22 01:30:03.283][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-22 01:30:03.283][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-22 01:30:03.283][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-22 01:30:03.289][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-22 01:30:03.292][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-22 01:30:03.294][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-22 01:30:03.296][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-22 01:30:03.302][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-22 01:30:03.304][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-22 01:30:03.306][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-22 01:30:03.308][self$setPropertyValue]
biodb.DEBUG[2024-07-22 01:30:03.310][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-22 01:30:03.312][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-22 01:30:03.314][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-22 01:30:03.317][self$setPropertyValue]
biodb.DEBUG[2024-07-22 01:30:03.320][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-07-22 01:30:03.324][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-22 01:30:03.325][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-07-22 01:30:03.327][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-22 01:30:03.329][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-22 01:30:03.331][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-22 01:30:03.336][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-22 01:30:03.339][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-22 01:30:03.341][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-22 01:30:03.343][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-22 01:30:03.345][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-22 01:30:03.347][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-22 01:30:03.350][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-07-22 01:30:03.352][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-22 01:30:03.354][self$setPropertyValue]
biodb.DEBUG[2024-07-22 01:30:03.357][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-22 01:30:03.359][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-22 01:30:03.359][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-22 01:30:03.359][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-22 01:30:03.359][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-22 01:30:03.359][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-22 01:30:03.361][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-22 01:30:03.364][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-22 01:30:03.388][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-22 01:30:03.392][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-22 01:30:03.394][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-22 01:30:03.395][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-22 01:30:03.396][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-22 01:30:03.397][self$setPropertyValue]
biodb.DEBUG[2024-07-22 01:30:03.399][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-22 01:30:03.401][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-22 01:30:03.406][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-22 01:30:03.408][self$setPropertyValue]
biodb.DEBUG[2024-07-22 01:30:03.410][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-07-22 01:30:03.413][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-22 01:30:03.416][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-07-22 01:30:03.418][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-22 01:30:03.420][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-22 01:30:03.434][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-22 01:30:03.436][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-22 01:30:03.450][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-22 01:30:03.495][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-22 01:30:03.506][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-22 01:30:03.508][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-22 01:30:03.511][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-22 01:30:03.514][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-07-22 01:30:03.516][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-22 01:30:03.519][self$setPropertyValue]
biodb.DEBUG[2024-07-22 01:30:03.521][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-22 01:30:03.523][self$setPropertyValue]
biodb.DEBUG[2024-07-22 01:30:03.526][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-22 01:30:03.528][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-22 01:30:03.529][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-22 01:30:03.532][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-22 01:30:03.545][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-22 01:30:03.548][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-22 01:30:03.550][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-22 01:30:03.562][self$setPropertyValue]
biodb.DEBUG[2024-07-22 01:30:03.564][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-22 01:30:03.567][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-22 01:30:03.569][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-22 01:30:03.573][self$setPropertyValue]
biodb.DEBUG[2024-07-22 01:30:03.575][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-07-22 01:30:03.579][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-22 01:30:03.581][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-07-22 01:30:03.584][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-22 01:30:03.587][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-22 01:30:03.589][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-22 01:30:03.592][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-22 01:30:03.594][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-22 01:30:03.599][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-22 01:30:03.601][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-22 01:30:03.603][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-22 01:30:03.606][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-22 01:30:03.611][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-07-22 01:30:03.614][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-22 01:30:03.616][self$setPropertyValue]
biodb.DEBUG[2024-07-22 01:30:03.619][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-22 01:30:03.621][self$setPropertyValue]
biodb.DEBUG[2024-07-22 01:30:03.624][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-22 01:30:03.626][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-22 01:30:03.660][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-22 01:30:03.662][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-22 01:30:03.664][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-22 01:30:03.666][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-22 01:30:03.675][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-22 01:30:03.678][self$setPropertyValue]
biodb.DEBUG[2024-07-22 01:30:03.680][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-22 01:30:03.681][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-22 01:30:03.683][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-22 01:30:03.686][self$setPropertyValue]
biodb.DEBUG[2024-07-22 01:30:03.691][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-22 01:30:03.692][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:03.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:03.694][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:03.695][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:03.702][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:03.704][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:03.706][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:03.708][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:03.710][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:03.711][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:03.713][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:03.715][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:03.717][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:03.721][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:03.724][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:03.727][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:03.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:03.780][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:03.781][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:03.783][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:03.785][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:03.787][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:03.829][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:03.847][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:03.849][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:03.851][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:03.853][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:03.870][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:03.873][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:03.875][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:03.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:03.879][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:03.891][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:03.893][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:03.895][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:03.897][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:03.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:03.918][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:03.920][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:03.923][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:03.925][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:03.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:03.927][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:03.929][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:03.930][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:03.932][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:03.933][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:03.935][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:03.937][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:03.940][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:03.942][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:03.944][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:03.946][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:03.948][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:03.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:03.954][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:03.956][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:03.957][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:03.959][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:03.961][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:03.966][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:03.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:03.970][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:03.972][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:03.974][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:03.979][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:03.981][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:03.983][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:03.985][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:03.987][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:03.990][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:03.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:03.993][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:03.994][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:03.995][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:03.996][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:03.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:03.999][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:04.000][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:04.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:04.004][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:04.006][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:04.009][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:04.011][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:04.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:04.015][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:04.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:04.019][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-07-22 01:30:04.069][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-07-22 01:30:04.072][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-07-22 01:30:04.075][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-07-22 01:30:04.079][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-07-22 01:30:04.082][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-07-22 01:30:04.085][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-07-22 01:30:04.088][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-07-22 01:30:04.090][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-07-22 01:30:04.092][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-07-22 01:30:04.097][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-22 01:30:04.099][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-07-22 01:30:04.101][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-07-22 01:30:04.102][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-07-22 01:30:04.104][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-07-22 01:30:04.106][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-07-22 01:30:04.108][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-07-22 01:30:04.110][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-07-22 01:30:04.112][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-07-22 01:30:04.114][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-07-22 01:30:04.116][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-07-22 01:30:04.121][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-07-22 01:30:04.123][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-07-22 01:30:04.126][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-07-22 01:30:04.128][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-07-22 01:30:04.131][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-07-22 01:30:04.135][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-07-22 01:30:04.137][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-07-22 01:30:04.139][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-07-22 01:30:04.141][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-07-22 01:30:04.143][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-07-22 01:30:04.146][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-07-22 01:30:04.149][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-07-22 01:30:04.151][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-07-22 01:30:04.153][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-07-22 01:30:04.155][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-07-22 01:30:04.157][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-07-22 01:30:04.160][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-07-22 01:30:04.163][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-07-22 01:30:04.166][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-07-22 01:30:04.169][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-07-22 01:30:04.189][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-07-22 01:30:04.247][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-07-22 01:30:04.264][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-07-22 01:30:04.274][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-07-22 01:30:04.276][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-07-22 01:30:04.278][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-07-22 01:30:04.281][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-07-22 01:30:04.296][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-07-22 01:30:04.299][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-07-22 01:30:04.301][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-07-22 01:30:04.303][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-07-22 01:30:04.305][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-07-22 01:30:04.307][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-07-22 01:30:04.320][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-07-22 01:30:04.322][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-07-22 01:30:04.324][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-07-22 01:30:04.326][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-07-22 01:30:04.327][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-07-22 01:30:04.329][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-07-22 01:30:04.335][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-07-22 01:30:04.338][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-07-22 01:30:04.340][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-07-22 01:30:04.343][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-07-22 01:30:04.347][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-07-22 01:30:04.349][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-07-22 01:30:04.351][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-07-22 01:30:04.353][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-07-22 01:30:04.354][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-07-22 01:30:04.356][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-07-22 01:30:04.358][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-07-22 01:30:04.364][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-07-22 01:30:04.367][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-07-22 01:30:04.370][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-07-22 01:30:04.373][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-07-22 01:30:04.377][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-07-22 01:30:04.409][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-07-22 01:30:04.412][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-07-22 01:30:04.415][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-07-22 01:30:04.417][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-07-22 01:30:04.423][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-07-22 01:30:04.425][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-07-22 01:30:04.427][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-07-22 01:30:04.442][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-07-22 01:30:04.445][initialize] This is biodb version 1.12.0.
biodb.DEBUG[2024-07-22 01:30:04.449][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-22 01:30:04.451][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:04.454][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:04.455][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:04.456][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:04.542][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:04.544][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:04.546][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:04.548][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:04.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:04.562][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:04.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:04.566][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:04.576][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:04.578][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:04.582][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:04.585][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:04.587][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:04.590][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:04.592][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:04.594][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:04.597][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:04.601][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:04.603][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:04.606][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:04.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:04.617][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:04.619][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:04.621][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:04.623][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:04.626][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:04.628][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:04.634][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:04.637][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:04.639][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:04.641][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:04.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:04.676][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:04.679][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:04.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:04.692][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:04.694][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:04.696][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:04.698][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:04.711][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:04.713][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:04.715][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:04.717][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:04.719][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:04.732][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:04.734][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:04.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:04.738][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:04.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:04.761][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:04.763][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:04.766][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:04.778][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:04.780][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:04.782][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:04.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:04.786][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:04.787][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:04.800][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:04.803][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:04.805][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:04.807][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:04.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:04.821][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:04.823][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:04.826][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:04.828][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:04.830][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:04.832][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:04.835][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:04.837][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:04.840][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:04.842][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:04.844][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:04.847][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:04.849][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:04.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:04.854][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:04.856][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:04.863][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:04.889][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:04.891][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:04.894][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:04.896][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:04.902][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:04.905][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:04.907][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:04.909][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:04.911][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:04.913][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:04.919][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:04.922][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:04.923][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:04.925][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:04.926][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:04.933][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:04.935][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:04.937][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:04.939][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:04.941][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:04.943][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:04.946][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:04.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:04.951][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:04.952][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:04.954][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:04.955][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:04.957][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:04.960][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:04.961][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:04.962][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:04.963][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:04.965][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:04.966][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:04.967][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:04.968][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:04.969][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:04.975][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:04.977][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:04.981][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodbChebi/definitions.yml".
biodb.DEBUG[2024-07-22 01:30:05.012][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2024-07-22 01:30:05.016][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-22 01:30:05.017][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-07-22 01:30:05.019][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-22 01:30:05.020][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-22 01:30:05.021][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-22 01:30:05.022][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-22 01:30:05.026][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-07-22 01:30:05.029][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2024-07-22 01:30:05.031][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-07-22 01:30:05.033][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-22 01:30:05.035][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-22 01:30:05.037][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2024-07-22 01:30:05.040][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-22 01:30:05.042][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-07-22 01:30:05.042][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2024-07-22 01:30:05.042][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-07-22 01:30:05.042][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-07-22 01:30:05.042][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-07-22 01:30:05.042][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2024-07-22 01:30:05.042][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-07-22 01:30:05.042][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-07-22 01:30:05.042][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2024-07-22 01:30:05.042][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2024-07-22 01:30:05.042][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-07-22 01:30:05.044][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-07-22 01:30:05.045][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-22 01:30:05.045][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-22 01:30:05.045][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-22 01:30:05.046][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-07-22 01:30:05.047][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-22 01:30:05.049][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-22 01:30:05.050][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-22 01:30:05.052][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-22 01:30:05.055][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-22 01:30:05.068][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-22 01:30:05.070][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-07-22 01:30:05.070][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2024-07-22 01:30:05.072][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-22 01:30:05.073][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-22 01:30:05.074][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-07-22 01:30:05.076][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2024-07-22 01:30:05.076][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2024-07-22 01:30:05.088][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-07-22 01:30:05.091][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-22 01:30:05.098][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2024-07-22 01:30:05.100][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-07-22 01:30:05.103][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-07-22 01:30:05.106][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-07-22 01:30:05.250][super$initialize] Initialize connector chebi.
biodb.DEBUG[2024-07-22 01:30:05.251][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2024-07-22 01:30:05.275][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2024-07-22 01:30:05.283][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2024-07-22 01:30:05.290][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-22 01:30:05.293][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-22 01:30:05.296][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2024-07-22 01:30:05.299][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2024-07-22 01:30:05.385][biodb::testThat]
biodb.INFO [2024-07-22 01:30:05.386][biodb::testThat] Running test function test.entry.fields (" Entry fields have a correct value ").
biodb.INFO [2024-07-22 01:30:05.389][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-22 01:30:05.391][biodb::testThat]
biodb.TRACE[2024-07-22 01:30:05.398][loadFileContents] Loaded 1 files from cache: [1]: "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2024-07-22 01:30:05.421][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-22 01:30:05.427][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-22 01:30:05.451][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:05.452][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:05.454][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:05.523][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:05.541][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:05.543][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:05.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:05.563][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:05.566][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:05.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:05.570][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:05.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:05.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:05.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:05.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:05.608][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-22 01:30:05.610][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-22 01:30:05.611][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:05.614][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:05.754][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-22 01:30:05.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-22 01:30:05.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:05.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:05.799][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-22 01:30:05.803][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-22 01:30:05.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:05.809][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:05.812][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-22 01:30:05.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-22 01:30:05.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:05.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:05.834][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-22 01:30:05.836][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-22 01:30:05.837][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:05.839][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:05.840][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-22 01:30:05.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-22 01:30:05.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:05.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:05.851][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-22 01:30:05.853][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-22 01:30:05.854][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:05.856][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:05.857][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-22 01:30:05.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-22 01:30:05.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:05.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:05.867][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:05.869][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:05.871][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:05.872][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:05.891][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:05.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:05.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:05.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:05.897][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-22 01:30:05.898][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:05.899][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:05.906][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:05.908][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-22 01:30:05.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:05.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:05.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:05.914][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:05.915][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:05.916][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:05.920][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:05.923][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:05.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:05.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:05.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:05.929][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:05.930][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:05.932][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:05.933][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:05.937][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:05.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:05.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:05.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:05.943][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-22 01:30:05.944][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-22 01:30:05.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:05.947][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:05.949][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-22 01:30:05.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-22 01:30:05.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:05.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:05.958][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-22 01:30:05.961][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-22 01:30:05.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:05.965][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:05.981][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-22 01:30:05.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-22 01:30:05.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:05.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:05.988][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:05.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:05.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:05.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:05.998][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:06.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:06.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:06.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:06.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:06.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:06.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:06.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:06.014][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:06.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:06.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:06.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:06.024][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:06.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:06.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:06.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:06.035][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:06.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:06.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:06.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:06.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:06.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:06.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:06.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:06.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:06.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:06.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:06.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:06.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:06.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:06.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:06.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:06.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:06.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:06.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:06.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:06.162][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2024-07-22 01:30:06.165][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-22 01:30:06.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-22 01:30:06.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:06.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:06.177][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-22 01:30:06.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-22 01:30:06.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:06.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:06.278][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-22 01:30:06.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-22 01:30:06.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:06.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:06.285][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-22 01:30:06.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-22 01:30:06.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:06.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:06.298][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:06.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:06.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:06.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:06.303][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:06.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:06.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:06.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:06.312][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-22 01:30:06.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-22 01:30:06.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:06.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:06.317][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-22 01:30:06.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-22 01:30:06.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:06.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:06.324][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-07-22 01:30:06.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-07-22 01:30:06.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:06.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:06.330][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-07-22 01:30:06.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-07-22 01:30:06.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:06.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:06.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:06.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:06.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:06.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:06.463][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:06.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:06.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:06.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:06.485][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:06.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:06.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:06.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:06.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:06.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:06.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:06.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:06.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:06.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:06.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:06.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:06.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:06.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:06.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:06.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:06.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:06.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:06.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:06.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:06.607][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:06.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:06.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:06.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:06.626][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:06.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:06.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:06.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:06.650][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:06.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:06.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:06.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:06.669][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:06.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:06.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:06.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:06.720][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:06.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:06.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:06.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:06.741][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:06.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:06.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:06.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:06.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:06.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:06.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:06.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:06.778][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:06.780][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:06.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:06.792][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:06.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:06.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:06.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:06.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:06.875][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:06.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:06.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:06.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:06.895][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:06.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:06.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:06.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:06.910][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:06.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:06.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:06.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:06.930][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:06.933][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:06.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:06.944][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:06.947][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:06.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:06.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:06.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:06.995][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:07.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:07.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:07.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:07.007][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:07.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:07.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:07.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:07.017][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:07.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:07.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:07.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:07.026][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:07.029][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:07.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:07.033][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:07.036][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:07.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:07.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:07.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:07.077][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-22 01:30:07.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-22 01:30:07.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:07.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:07.091][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-22 01:30:07.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-22 01:30:07.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:07.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:07.097][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-22 01:30:07.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-22 01:30:07.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:07.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:07.105][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-22 01:30:07.108][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-22 01:30:07.113][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:07.115][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:07.118][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-22 01:30:07.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-22 01:30:07.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:07.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:07.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:07.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:07.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:07.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:07.180][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:07.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:07.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:07.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:07.192][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:07.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:07.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:07.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:07.202][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:07.204][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:07.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:07.208][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:07.211][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:07.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:07.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:07.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:07.282][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:07.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:07.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:07.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:07.295][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:07.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:07.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:07.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:07.311][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:07.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:07.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:07.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:07.321][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:07.324][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:07.327][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:07.329][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:07.331][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:07.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:07.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:07.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:07.413][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-22 01:30:07.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-22 01:30:07.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:07.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:07.430][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-22 01:30:07.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-22 01:30:07.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:07.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:07.440][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-22 01:30:07.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-22 01:30:07.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:07.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:07.459][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-22 01:30:07.461][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-22 01:30:07.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:07.466][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:07.474][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-22 01:30:07.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-22 01:30:07.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:07.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:07.500][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-07-22 01:30:07.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-22 01:30:07.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:07.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:07.509][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-07-22 01:30:07.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-22 01:30:07.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:07.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:07.518][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-07-22 01:30:07.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-22 01:30:07.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:07.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:07.533][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-07-22 01:30:07.536][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-22 01:30:07.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:07.540][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:07.542][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-07-22 01:30:07.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-22 01:30:07.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:07.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:07.579][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:07.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:07.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:07.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:07.597][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:07.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:07.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:07.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:07.609][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:07.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:07.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:07.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:07.618][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:07.629][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:07.631][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:07.633][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:07.635][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:07.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:07.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:07.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:07.669][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-22 01:30:07.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-22 01:30:07.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:07.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:07.681][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-22 01:30:07.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-22 01:30:07.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:07.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:07.691][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-22 01:30:07.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-22 01:30:07.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:07.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:07.705][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-22 01:30:07.707][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-22 01:30:07.709][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:07.712][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:07.714][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-22 01:30:07.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-22 01:30:07.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:07.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:07.748][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-22 01:30:07.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-22 01:30:07.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:07.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:07.757][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-22 01:30:07.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-22 01:30:07.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:07.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:07.765][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-22 01:30:07.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-22 01:30:07.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:07.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:07.775][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-22 01:30:07.783][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-22 01:30:07.785][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:07.789][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:07.791][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-22 01:30:07.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-22 01:30:07.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:07.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:07.834][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-22 01:30:07.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-22 01:30:07.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:07.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:07.847][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-22 01:30:07.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-22 01:30:07.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:07.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:07.858][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-22 01:30:07.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-22 01:30:07.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:07.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:07.865][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-22 01:30:07.866][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-22 01:30:07.867][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:07.870][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:07.872][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-22 01:30:07.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-22 01:30:07.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:07.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:07.895][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:07.901][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:07.904][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:07.907][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:07.922][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-22 01:30:07.923][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-22 01:30:07.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:07.926][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:07.934][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-22 01:30:07.936][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-22 01:30:07.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:07.938][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:07.947][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-22 01:30:07.950][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-22 01:30:07.951][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:07.952][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:07.958][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-22 01:30:07.961][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-22 01:30:07.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:07.965][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:07.975][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:07.977][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:07.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:07.979][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:07.988][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:07.990][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:07.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:07.993][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:08.000][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:08.002][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:08.004][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:08.005][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:08.014][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-07-22 01:30:08.017][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-22 01:30:08.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:08.023][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:08.033][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:08.035][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:08.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:08.039][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:08.053][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-22 01:30:08.056][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-22 01:30:08.061][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:08.065][ef$get] fields variable is a list.
biodb.INFO [2024-07-22 01:30:08.092][biodb::testThat]
biodb.INFO [2024-07-22 01:30:08.095][biodb::testThat] Running test function test.rt.unit (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-07-22 01:30:08.100][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-22 01:30:08.102][biodb::testThat]
biodb.DEBUG[2024-07-22 01:30:08.141][private$loadEntries] Creating entries from ids [1]: "15440".
biodb.DEBUG[2024-07-22 01:30:08.169][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-22 01:30:08.181][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15440".
biodb.TRACE[2024-07-22 01:30:08.185][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-22 01:30:08.189][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15440.xml".
biodb.DEBUG[2024-07-22 01:30:08.192][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-22 01:30:08.259][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-22 01:30:08.262][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-22 01:30:08.267][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:08.270][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:08.272][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:08.284][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:08.286][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:08.288][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:08.291][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:08.294][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:08.296][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:08.298][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:08.301][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:08.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:08.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:08.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:08.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:08.385][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-22 01:30:08.388][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-22 01:30:08.390][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:08.392][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:08.396][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-22 01:30:08.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-22 01:30:08.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:08.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:08.407][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-22 01:30:08.410][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-22 01:30:08.412][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:08.424][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:08.542][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-22 01:30:08.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-22 01:30:08.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:08.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:08.554][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-22 01:30:08.557][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-22 01:30:08.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:08.561][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:08.566][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-22 01:30:08.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-22 01:30:08.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:08.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:08.585][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-22 01:30:08.587][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-22 01:30:08.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:08.592][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:08.595][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-22 01:30:08.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-22 01:30:08.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:08.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:08.603][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:08.605][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:08.608][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:08.610][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:08.613][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:08.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:08.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:08.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:08.624][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-22 01:30:08.628][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:08.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:08.632][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:08.635][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-22 01:30:08.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:08.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:08.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:08.645][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:08.647][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:08.651][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:08.653][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:08.656][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:08.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:08.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:08.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:08.666][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:08.668][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:08.669][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:08.671][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:08.673][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:08.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:08.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:08.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:08.685][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-22 01:30:08.690][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-22 01:30:08.693][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:08.694][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:08.697][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-22 01:30:08.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-22 01:30:08.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:08.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:08.705][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-22 01:30:08.707][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-22 01:30:08.709][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:08.711][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:08.714][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-22 01:30:08.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-22 01:30:08.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:08.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:08.723][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:08.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:08.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:08.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:08.731][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:08.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:08.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:08.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:08.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:08.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:08.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:08.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:08.748][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:08.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:08.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:08.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:08.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:08.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:08.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:08.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:08.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:08.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:08.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:08.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:08.775][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:08.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:08.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:08.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:08.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:08.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:08.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:08.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:08.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:08.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:08.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:08.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:08.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:08.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:08.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:08.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:08.808][self$createEntryFromContent] Accession numbers: 15440.
biodb.TRACE[2024-07-22 01:30:08.810][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-07-22 01:30:08.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-07-22 01:30:08.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:08.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:08.822][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-07-22 01:30:08.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-07-22 01:30:08.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:08.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:08.837][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-07-22 01:30:08.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-07-22 01:30:08.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:08.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-07-22 01:30:08.860][biodb::testThat]
biodb.INFO [2024-07-22 01:30:08.862][biodb::testThat] Running test function test.searchForEntries (" We can search for an entry by searchable field ").
biodb.INFO [2024-07-22 01:30:08.866][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-22 01:30:08.869][biodb::testThat]
biodb.TRACE[2024-07-22 01:30:08.876][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:08.880][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:08.882][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:08.883][ef$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:08.885][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
biodb.TRACE[2024-07-22 01:30:08.947][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:08.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:08.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:08.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:08.954][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:08.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:08.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:08.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:08.964][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:08.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:08.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:08.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:08.973][function(conn, opt)] With value "squalene".
biodb.DEBUG[2024-07-22 01:30:08.984][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2024-07-22 01:30:09.019][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-22 01:30:09.049][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2024-07-22 01:30:09.051][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-22 01:30:09.054][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2024-07-22 01:30:09.097][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-22 01:30:09.123][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-22 01:30:09.133][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-07-22 01:30:09.136][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-22 01:30:09.148][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-07-22 01:30:09.152][function(conn, opt)] With found IDs [1]: "15440".
biodb.TRACE[2024-07-22 01:30:09.212][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:09.214][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:09.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:09.217][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:09.219][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:09.227][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:09.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:09.230][ef$get] fields variable is a list.
biodb.INFO [2024-07-22 01:30:09.236][biodb::testThat]
biodb.INFO [2024-07-22 01:30:09.245][biodb::testThat] Running test function test.searchByName (" We can search for an entry by name. ").
biodb.INFO [2024-07-22 01:30:09.247][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-22 01:30:09.249][biodb::testThat]
biodb.TRACE[2024-07-22 01:30:09.310][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:09.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:09.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:09.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:09.318][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:09.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:09.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:09.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:09.324][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:09.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:09.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:09.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:09.484][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-22 01:30:09.489][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-22 01:30:09.490][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-07-22 01:30:09.493][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-22 01:30:09.495][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.INFO [2024-07-22 01:30:09.535][biodb::testThat]
biodb.INFO [2024-07-22 01:30:09.536][biodb::testThat] Running test function testEntryLoading (" We can load an entry from the database. ").
biodb.INFO [2024-07-22 01:30:09.543][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-22 01:30:09.544][biodb::testThat]
biodb.TRACE[2024-07-22 01:30:09.577][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-22 01:30:09.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-22 01:30:09.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:09.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:09.585][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-22 01:30:09.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-22 01:30:09.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:09.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:09.590][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-22 01:30:09.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-22 01:30:09.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:09.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:09.598][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-22 01:30:09.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-22 01:30:09.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:09.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:09.621][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:09.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:09.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:09.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:09.626][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:09.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:09.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:09.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:09.635][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-22 01:30:09.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-22 01:30:09.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:09.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:09.640][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-22 01:30:09.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-22 01:30:09.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:09.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:09.648][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-07-22 01:30:09.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-07-22 01:30:09.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:09.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:09.653][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-07-22 01:30:09.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-07-22 01:30:09.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:09.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:09.699][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-22 01:30:09.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-22 01:30:09.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:09.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:09.708][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-22 01:30:09.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-22 01:30:09.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:09.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:09.712][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-22 01:30:09.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-22 01:30:09.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:09.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:09.719][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-22 01:30:09.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-22 01:30:09.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:09.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:09.723][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:09.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:09.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:09.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:09.730][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:09.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:09.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:09.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:09.735][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-22 01:30:09.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-22 01:30:09.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:09.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:09.742][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-22 01:30:09.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-22 01:30:09.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:09.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:09.747][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-07-22 01:30:09.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-07-22 01:30:09.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:09.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:09.755][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-07-22 01:30:09.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-07-22 01:30:09.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:09.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-07-22 01:30:09.780][biodb::testThat]
biodb.INFO [2024-07-22 01:30:09.782][biodb::testThat] Running test function test.entry.page.url (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-07-22 01:30:09.783][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-22 01:30:09.784][biodb::testThat]
biodb.INFO [2024-07-22 01:30:09.798][biodb::testThat]
biodb.INFO [2024-07-22 01:30:09.800][biodb::testThat] Running test function test.entry.image.url (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-07-22 01:30:09.802][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-22 01:30:09.803][biodb::testThat]
biodb.INFO [2024-07-22 01:30:09.820][biodb::testThat]
biodb.INFO [2024-07-22 01:30:09.822][biodb::testThat] Running test function test.entry.page.url.download (" The entry page URL can be downloaded. ").
biodb.INFO [2024-07-22 01:30:09.823][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-22 01:30:09.825][biodb::testThat]
biodb.DEBUG[2024-07-22 01:30:09.831][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
biodb.DEBUG[2024-07-22 01:30:10.846][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440.
biodb.INFO [2024-07-22 01:30:11.849][biodb::testThat]
biodb.INFO [2024-07-22 01:30:11.850][biodb::testThat] Running test function test.entry.image.url.download (" The entry image URL can be downloaded. ").
biodb.INFO [2024-07-22 01:30:11.852][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-22 01:30:11.853][biodb::testThat]
biodb.DEBUG[2024-07-22 01:30:12.393][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/displayImage.do?defaultImage=true&imageIndex=0&chebiId=15440&dimensions=400.
biodb.TRACE[2024-07-22 01:30:12.866][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:12.869][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:12.871][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:12.874][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:12.876][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:12.880][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:12.883][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:12.911][ef$get] fields variable is a list.
biodb.INFO [2024-07-22 01:30:12.915][biodb::testThat]
biodb.INFO [2024-07-22 01:30:12.917][biodb::testThat] Running test function test.searchCompound (" We can search for a compound ").
biodb.INFO [2024-07-22 01:30:12.919][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-22 01:30:12.922][biodb::testThat]
biodb.TRACE[2024-07-22 01:30:12.947][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:12.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:12.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:12.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:12.957][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:12.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:12.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:12.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:12.978][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:12.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:12.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:12.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:13.453][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-22 01:30:13.471][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-22 01:30:13.474][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-07-22 01:30:13.477][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-22 01:30:13.493][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-07-22 01:30:13.872][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-22 01:30:13.890][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-22 01:30:13.894][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-07-22 01:30:13.897][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-22 01:30:13.911][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.TRACE[2024-07-22 01:30:13.980][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-22 01:30:13.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-22 01:30:13.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:14.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:14.022][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:14.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:14.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:14.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:14.081][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:14.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:14.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:14.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:14.124][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:14.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:14.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:14.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:14.164][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:14.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:14.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:14.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:14.191][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:14.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:14.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:14.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:14.253][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-22 01:30:14.274][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-22 01:30:14.299][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-07-22 01:30:14.330][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-22 01:30:14.358][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-07-22 01:30:14.363][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:14.366][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:14.380][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:14.403][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:14.406][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:14.408][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:14.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:14.416][private$loadEntries] Creating entries from ids [1]: "192288".
biodb.DEBUG[2024-07-22 01:30:14.707][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-22 01:30:14.713][cch$loadFileContent] Trying to load 1 files from cache: [1]: "192288".
biodb.TRACE[2024-07-22 01:30:14.718][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-22 01:30:14.744][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/192288.xml".
biodb.DEBUG[2024-07-22 01:30:14.748][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-22 01:30:14.751][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-22 01:30:14.754][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-22 01:30:14.768][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:14.770][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:14.772][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:14.796][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:14.808][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:14.811][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:14.813][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:14.829][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:14.832][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:14.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:14.836][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:14.861][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:14.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:14.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:14.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:14.882][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-22 01:30:14.885][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-22 01:30:14.887][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:14.889][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:14.902][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-22 01:30:14.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-22 01:30:14.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:14.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:14.923][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-22 01:30:14.926][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-22 01:30:14.950][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:14.954][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:14.970][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-22 01:30:14.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-22 01:30:14.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:14.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:14.991][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-22 01:30:14.993][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-22 01:30:14.995][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:14.997][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:15.000][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-22 01:30:15.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-22 01:30:15.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:15.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:15.009][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-22 01:30:15.012][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-22 01:30:15.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:15.024][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:15.026][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-22 01:30:15.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-22 01:30:15.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:15.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:15.038][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:15.041][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:15.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:15.045][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:15.048][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-22 01:30:15.050][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:15.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:15.054][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:15.056][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-22 01:30:15.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:15.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:15.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:15.068][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:15.071][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:15.074][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:15.077][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:15.079][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:15.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:15.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:15.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:15.094][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:15.096][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:15.099][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:15.104][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:15.106][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:15.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:15.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:15.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:15.117][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-22 01:30:15.120][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-22 01:30:15.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:15.124][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:15.132][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-22 01:30:15.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-22 01:30:15.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:15.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:15.144][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-22 01:30:15.147][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-22 01:30:15.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:15.151][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:15.153][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-22 01:30:15.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-22 01:30:15.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:15.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:15.165][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:15.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:15.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:15.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:15.174][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:15.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:15.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:15.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:15.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:15.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:15.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:15.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:15.207][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:15.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:15.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:15.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:15.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:15.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:15.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:15.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:15.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:15.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:15.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:15.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:15.262][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:15.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:15.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:15.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:15.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:15.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:15.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:15.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:15.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:15.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:15.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:15.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:15.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:15.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:15.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:15.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:15.342][self$createEntryFromContent] Accession numbers: 192288.
biodb.TRACE[2024-07-22 01:30:15.384][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:15.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:15.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:15.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:15.399][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:15.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:15.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:15.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:15.413][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:15.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:15.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:15.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:15.425][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-22 01:30:15.438][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-22 01:30:15.441][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-07-22 01:30:15.444][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-22 01:30:15.448][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-07-22 01:30:15.498][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:15.501][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:15.503][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:15.519][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:15.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:15.523][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:15.525][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:15.531][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:15.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:15.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:15.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:15.540][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:15.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:15.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:15.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:15.552][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:15.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:15.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:15.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:15.560][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:15.562][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:15.564][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:15.580][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:15.583][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:15.585][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:15.590][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:15.593][private$loadEntries] Creating entries from ids [1]: "209892".
biodb.DEBUG[2024-07-22 01:30:15.597][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-22 01:30:15.606][cch$loadFileContent] Trying to load 1 files from cache: [1]: "209892".
biodb.TRACE[2024-07-22 01:30:15.610][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-22 01:30:15.615][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/209892.xml".
biodb.DEBUG[2024-07-22 01:30:15.618][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-22 01:30:15.621][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-22 01:30:15.624][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-22 01:30:15.630][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:15.632][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:15.634][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:15.650][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:15.652][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:15.657][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:15.659][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:15.664][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:15.670][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:15.672][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:15.674][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:15.677][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:15.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:15.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:15.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:15.704][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-22 01:30:15.710][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-22 01:30:15.714][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:15.716][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:15.745][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-22 01:30:15.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-22 01:30:15.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:15.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:15.759][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-22 01:30:15.761][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-22 01:30:15.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:15.781][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:15.784][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-22 01:30:15.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-22 01:30:15.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:15.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:15.802][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-22 01:30:15.804][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-22 01:30:15.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:15.830][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:15.834][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-22 01:30:15.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-22 01:30:15.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:15.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:15.847][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-22 01:30:15.856][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-22 01:30:15.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:15.874][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:15.877][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-22 01:30:15.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-22 01:30:15.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:15.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:15.905][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:15.908][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:15.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:15.919][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:15.921][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-22 01:30:15.924][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:15.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:15.940][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:15.944][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-22 01:30:15.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:15.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:15.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:15.960][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:15.962][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:15.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:15.973][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:15.976][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:15.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:15.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:15.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:15.986][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:15.988][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:15.990][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:15.992][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:16.023][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:16.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:16.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:16.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:16.042][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-22 01:30:16.044][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-22 01:30:16.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:16.088][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:16.091][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-22 01:30:16.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-22 01:30:16.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:16.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:16.112][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-22 01:30:16.114][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-22 01:30:16.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:16.148][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:16.151][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-22 01:30:16.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-22 01:30:16.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:16.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:16.180][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:16.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:16.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:16.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:16.203][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:16.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:16.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:16.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:16.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:16.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:16.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:16.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:16.251][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:16.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:16.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:16.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:16.274][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:16.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:16.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:16.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:16.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:16.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:16.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:16.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:16.331][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:16.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:16.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:16.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:16.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:16.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:16.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:16.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:16.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:16.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:16.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:16.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:16.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:16.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:16.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:16.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:16.451][self$createEntryFromContent] Accession numbers: 209892.
biodb.TRACE[2024-07-22 01:30:16.454][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:16.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:16.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:16.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:16.473][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:16.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:16.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:16.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:16.508][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:16.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:16.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:16.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:16.633][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-22 01:30:16.656][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-22 01:30:16.660][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-07-22 01:30:16.663][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-22 01:30:16.667][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-07-22 01:30:16.694][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:16.697][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:16.711][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:16.737][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:16.770][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:16.772][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:16.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:16.778][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:16.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:16.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:16.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:16.792][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:16.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:16.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:16.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:16.873][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:16.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:16.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:16.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:16.895][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:16.897][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:16.899][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:16.914][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:16.917][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:16.919][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:16.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:16.923][private$loadEntries] Creating entries from ids [1]: "26747".
biodb.DEBUG[2024-07-22 01:30:16.925][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-22 01:30:16.928][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26747".
biodb.TRACE[2024-07-22 01:30:16.931][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-22 01:30:16.934][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26747.xml".
biodb.DEBUG[2024-07-22 01:30:16.937][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-22 01:30:16.940][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-22 01:30:16.942][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-22 01:30:16.960][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:16.962][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:16.965][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:17.006][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:17.008][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:17.010][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:17.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:17.033][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:17.036][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:17.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:17.060][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:17.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:17.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:17.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:17.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:17.086][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-22 01:30:17.089][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-22 01:30:17.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:17.105][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:17.108][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-22 01:30:17.110][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-22 01:30:17.113][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:17.127][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:17.130][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-22 01:30:17.132][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-22 01:30:17.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:17.170][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:17.173][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-22 01:30:17.176][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-22 01:30:17.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:17.194][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:17.197][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:17.200][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:17.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:17.219][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:17.234][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-22 01:30:17.237][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:17.239][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:17.241][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:17.256][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:17.259][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:17.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:17.274][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:17.277][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:17.280][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:17.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:17.300][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:17.304][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:17.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:17.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:17.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:17.325][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-22 01:30:17.328][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-22 01:30:17.331][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:17.346][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:17.361][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-22 01:30:17.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-22 01:30:17.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:17.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:17.383][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-22 01:30:17.385][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-22 01:30:17.388][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:17.403][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:17.406][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:17.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:17.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:17.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:17.430][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:17.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:17.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:17.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:17.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:17.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:17.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:17.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:17.471][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:17.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:17.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:17.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:17.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:17.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:17.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:17.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:17.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:17.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:17.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:17.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:17.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:17.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:17.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:17.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:17.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:17.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:17.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:17.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:17.586][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:17.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:17.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:17.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:17.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:17.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:17.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:17.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:17.629][self$createEntryFromContent] Accession numbers: 26747.
biodb.TRACE[2024-07-22 01:30:17.631][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:17.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:17.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:17.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:17.660][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:17.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:17.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:17.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:17.682][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:17.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:17.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:17.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:17.704][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:17.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:17.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:17.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:17.729][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:17.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:17.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:17.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:17.751][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:17.766][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:17.768][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:17.799][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:17.801][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:17.803][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:17.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:17.830][private$loadEntries] Creating entries from ids [1]: "59285".
biodb.DEBUG[2024-07-22 01:30:17.832][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-22 01:30:17.837][cch$loadFileContent] Trying to load 1 files from cache: [1]: "59285".
biodb.TRACE[2024-07-22 01:30:17.840][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-22 01:30:17.843][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/59285.xml".
biodb.DEBUG[2024-07-22 01:30:17.845][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-22 01:30:17.848][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-22 01:30:17.851][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-22 01:30:17.868][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:17.870][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:17.872][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:17.887][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:17.899][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:17.902][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:17.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:17.908][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:17.914][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:17.916][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:17.919][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:17.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:17.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:17.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:17.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:17.932][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-22 01:30:17.935][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-22 01:30:17.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:17.940][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:17.942][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-22 01:30:17.945][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-22 01:30:17.954][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:17.956][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:17.960][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-22 01:30:17.962][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-22 01:30:17.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:17.972][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:17.975][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-22 01:30:17.978][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-22 01:30:17.981][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:17.983][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:17.986][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:17.989][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:17.993][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:17.996][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:17.998][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-22 01:30:18.001][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:18.005][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:18.007][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:18.010][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:18.012][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:18.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:18.017][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:18.020][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:18.023][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:18.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:18.027][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:18.031][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:18.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:18.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:18.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:18.040][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-22 01:30:18.042][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-22 01:30:18.046][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:18.049][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:18.052][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-22 01:30:18.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-22 01:30:18.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:18.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:18.066][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-22 01:30:18.086][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-22 01:30:18.088][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:18.091][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:18.094][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:18.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:18.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:18.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:18.111][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:18.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:18.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:18.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:18.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:18.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:18.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:18.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:18.147][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:18.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:18.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:18.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:18.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:18.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:18.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:18.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:18.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:18.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:18.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:18.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:18.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:18.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:18.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:18.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:18.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:18.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:18.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:18.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:18.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:18.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:18.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:18.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:18.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:18.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:18.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:18.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:18.292][self$createEntryFromContent] Accession numbers: 59285.
biodb.TRACE[2024-07-22 01:30:18.295][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:18.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:18.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:18.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:18.371][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:18.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:18.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:18.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:18.406][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:18.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:18.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:18.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:18.430][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:18.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:18.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:18.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:18.463][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:18.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:18.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:18.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:18.491][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:18.493][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:18.510][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:18.528][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:18.530][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:18.546][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:18.548][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:18.551][private$loadEntries] Creating entries from ids [1]: "75174".
biodb.DEBUG[2024-07-22 01:30:18.553][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-22 01:30:18.570][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75174".
biodb.TRACE[2024-07-22 01:30:18.573][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-22 01:30:18.590][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75174.xml".
biodb.DEBUG[2024-07-22 01:30:18.593][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-22 01:30:18.596][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-22 01:30:18.598][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-22 01:30:18.613][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:18.615][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:18.617][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:18.643][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:18.666][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:18.669][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:18.671][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:18.689][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:18.692][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:18.694][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:18.697][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:18.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:18.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:18.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:18.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:18.739][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-22 01:30:18.742][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-22 01:30:18.745][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:18.763][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:18.766][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-22 01:30:18.769][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-22 01:30:18.772][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:18.790][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:18.793][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-22 01:30:18.796][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-22 01:30:18.813][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:18.816][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:18.820][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-22 01:30:18.824][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-22 01:30:18.839][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:18.841][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:18.845][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:18.858][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:18.860][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:18.863][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:18.867][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-22 01:30:18.882][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:18.884][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:18.887][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:18.902][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:18.905][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:18.908][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:18.911][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:18.933][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:18.935][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:18.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:18.939][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:18.960][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:18.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:18.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:18.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:18.980][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-22 01:30:18.984][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-22 01:30:18.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:19.001][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:19.005][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-22 01:30:19.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-22 01:30:19.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:19.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:19.056][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-22 01:30:19.059][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-22 01:30:19.061][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:19.076][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:19.079][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:19.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:19.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:19.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:19.100][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:19.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:19.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:19.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:19.123][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:19.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:19.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:19.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:19.144][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:19.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:19.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:19.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:19.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:19.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:19.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:19.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:19.184][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:19.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:19.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:19.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:19.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:19.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:19.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:19.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:19.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:19.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:19.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:19.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:19.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:19.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:19.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:19.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:19.276][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:19.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:19.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:19.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:19.308][self$createEntryFromContent] Accession numbers: 75174.
biodb.TRACE[2024-07-22 01:30:19.311][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:19.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:19.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:19.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:19.353][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:19.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:19.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:19.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:19.379][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:19.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:19.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:19.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:19.407][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:19.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:19.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:19.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:19.437][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:19.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:19.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:19.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:19.470][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:19.473][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:19.484][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:19.504][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:19.506][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:19.508][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:19.511][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:19.529][private$loadEntries] Creating entries from ids [1]: "15441".
biodb.DEBUG[2024-07-22 01:30:19.532][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-22 01:30:19.536][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15441".
biodb.TRACE[2024-07-22 01:30:19.545][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-22 01:30:19.549][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15441.xml".
biodb.DEBUG[2024-07-22 01:30:19.551][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-22 01:30:19.553][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-22 01:30:19.559][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-22 01:30:19.563][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:19.565][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:19.587][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:19.609][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:19.616][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:19.618][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:19.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:19.630][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:19.633][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:19.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:19.638][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:19.646][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:19.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:19.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:19.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:19.660][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-22 01:30:19.663][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-22 01:30:19.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:19.681][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:19.689][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-22 01:30:19.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-22 01:30:19.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:19.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:19.697][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-22 01:30:19.709][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-22 01:30:19.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:19.714][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:19.721][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-22 01:30:19.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-22 01:30:19.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:19.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:19.729][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-22 01:30:19.733][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-22 01:30:19.735][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:19.737][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:19.739][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-22 01:30:19.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-22 01:30:19.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:19.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:19.749][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-22 01:30:19.751][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-22 01:30:19.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:19.756][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:19.758][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-22 01:30:19.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-22 01:30:19.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:19.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:19.771][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:19.773][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:19.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:19.780][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:19.783][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:19.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:19.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:19.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:19.793][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-22 01:30:19.796][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:19.798][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:19.799][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:19.802][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-22 01:30:19.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:19.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:19.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:19.816][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:19.819][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:19.822][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:19.823][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:19.825][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:19.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:19.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:19.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:19.830][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:19.832][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:19.837][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:19.839][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:19.843][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:19.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:19.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:19.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:19.853][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-22 01:30:19.855][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-22 01:30:19.856][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:19.858][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:19.860][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-22 01:30:19.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-22 01:30:19.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:19.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:19.870][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-22 01:30:19.872][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-22 01:30:19.874][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:19.877][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:19.880][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-22 01:30:19.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-22 01:30:19.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:19.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:19.886][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:19.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:19.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:19.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:19.894][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:19.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:19.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:19.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:19.901][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:19.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:19.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:19.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:19.910][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:19.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:19.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:19.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:19.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:19.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:19.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:19.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:19.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:19.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:19.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:19.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:19.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:19.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:19.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:19.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:19.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:19.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:19.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:19.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:19.989][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:19.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:19.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:19.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:19.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:19.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:20.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:20.004][self$createEntryFromContent] Accession numbers: 15441.
biodb.TRACE[2024-07-22 01:30:20.006][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:20.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:20.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.011][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:20.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:20.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.018][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:20.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:20.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:20.023][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:20.025][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:20.027][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:20.034][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:20.036][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:20.037][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:20.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:20.039][private$loadEntries] Creating entries from ids [1]: "15442".
biodb.DEBUG[2024-07-22 01:30:20.045][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-22 01:30:20.047][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15442".
biodb.TRACE[2024-07-22 01:30:20.049][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-22 01:30:20.051][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15442.xml".
biodb.DEBUG[2024-07-22 01:30:20.054][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-22 01:30:20.057][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-22 01:30:20.059][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-22 01:30:20.069][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:20.072][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:20.074][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:20.095][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:20.097][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:20.098][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:20.100][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:20.104][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:20.106][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:20.108][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.110][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:20.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:20.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.119][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-22 01:30:20.120][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-22 01:30:20.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.123][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.125][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-22 01:30:20.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-22 01:30:20.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.133][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-22 01:30:20.134][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-22 01:30:20.135][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.136][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.138][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-22 01:30:20.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-22 01:30:20.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.148][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-22 01:30:20.149][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-22 01:30:20.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.151][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.153][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-22 01:30:20.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-22 01:30:20.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.160][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-22 01:30:20.161][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-22 01:30:20.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.164][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.166][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-22 01:30:20.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-22 01:30:20.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.171][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:20.175][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:20.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.179][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.181][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:20.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:20.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.188][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-22 01:30:20.190][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:20.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.192][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.194][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-22 01:30:20.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:20.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.202][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:20.209][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:20.211][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.212][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.214][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:20.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:20.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.222][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:20.223][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:20.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.226][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.228][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:20.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:20.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.240][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-22 01:30:20.242][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-22 01:30:20.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.246][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.248][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-22 01:30:20.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-22 01:30:20.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.255][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-22 01:30:20.257][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-22 01:30:20.259][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.260][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.263][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-22 01:30:20.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-22 01:30:20.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.272][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:20.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:20.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.302][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:20.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:20.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.307][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:20.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:20.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.315][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:20.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:20.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:20.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:20.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:20.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:20.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:20.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:20.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.342][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:20.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:20.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.361][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:20.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:20.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:20.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:20.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:20.374][self$createEntryFromContent] Accession numbers: 15442.
biodb.TRACE[2024-07-22 01:30:20.376][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:20.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:20.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.383][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:20.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:20.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.390][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:20.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:20.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:20.395][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:20.397][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:20.398][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:20.405][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:20.407][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:20.408][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:20.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:20.410][private$loadEntries] Creating entries from ids [1]: "57310".
biodb.DEBUG[2024-07-22 01:30:20.411][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-22 01:30:20.413][cch$loadFileContent] Trying to load 1 files from cache: [1]: "57310".
biodb.TRACE[2024-07-22 01:30:20.415][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-22 01:30:20.420][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/57310.xml".
biodb.DEBUG[2024-07-22 01:30:20.422][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-22 01:30:20.424][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-22 01:30:20.425][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-22 01:30:20.427][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:20.428][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:20.430][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:20.438][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:20.439][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:20.449][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:20.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:20.454][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:20.456][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:20.459][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.460][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:20.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:20.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.467][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-22 01:30:20.469][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-22 01:30:20.470][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.472][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.473][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-22 01:30:20.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-22 01:30:20.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.478][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-22 01:30:20.480][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-22 01:30:20.482][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.484][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.485][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-22 01:30:20.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-22 01:30:20.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.493][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-22 01:30:20.495][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-22 01:30:20.497][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.499][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.501][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-22 01:30:20.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-22 01:30:20.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.507][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-22 01:30:20.510][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-22 01:30:20.511][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.512][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.514][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-22 01:30:20.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-22 01:30:20.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.527][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:20.529][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:20.531][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.532][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.537][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-22 01:30:20.540][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:20.543][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.545][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.550][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-22 01:30:20.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:20.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.558][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:20.564][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:20.565][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.567][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.568][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:20.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:20.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.573][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:20.581][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:20.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.585][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.588][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:20.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:20.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.601][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-22 01:30:20.607][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-22 01:30:20.608][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.610][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.612][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-22 01:30:20.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-22 01:30:20.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.618][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-22 01:30:20.620][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-22 01:30:20.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.623][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.624][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-22 01:30:20.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-22 01:30:20.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.631][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:20.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:20.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.636][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:20.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:20.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:20.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:20.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.663][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:20.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:20.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:20.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:20.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.674][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:20.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:20.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:20.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:20.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:20.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:20.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:20.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:20.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.715][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:20.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:20.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:20.720][self$createEntryFromContent] Accession numbers: 57310.
biodb.TRACE[2024-07-22 01:30:20.721][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:20.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:20.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.730][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:20.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:20.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.738][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:20.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:20.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:20.745][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:20.747][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:20.748][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:20.756][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:20.758][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:20.759][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:20.764][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:20.765][private$loadEntries] Creating entries from ids [1]: "66216".
biodb.DEBUG[2024-07-22 01:30:20.767][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-22 01:30:20.769][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66216".
biodb.TRACE[2024-07-22 01:30:20.770][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-22 01:30:20.811][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66216.xml".
biodb.DEBUG[2024-07-22 01:30:20.813][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-22 01:30:20.815][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-22 01:30:20.816][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-22 01:30:20.818][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:20.824][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:20.825][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:20.832][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:20.840][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:20.842][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:20.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:20.847][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:20.848][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:20.850][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.856][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:20.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:20.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.862][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-22 01:30:20.864][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-22 01:30:20.870][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.872][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.874][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-22 01:30:20.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-22 01:30:20.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.879][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-22 01:30:20.884][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-22 01:30:20.886][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.888][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.890][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-22 01:30:20.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-22 01:30:20.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.902][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-22 01:30:20.904][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-22 01:30:20.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.907][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.909][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-22 01:30:20.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-22 01:30:20.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.922][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-22 01:30:20.926][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-22 01:30:20.928][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.929][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.931][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-22 01:30:20.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-22 01:30:20.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.937][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:20.940][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:20.941][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.942][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.944][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-22 01:30:20.945][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:20.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.948][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.952][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-22 01:30:20.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:20.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.972][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:20.973][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:20.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.975][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.979][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:20.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:20.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.986][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:20.988][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:20.989][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:20.993][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:20.996][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:20.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:21.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:21.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:21.009][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-22 01:30:21.011][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-22 01:30:21.012][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:21.014][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:21.015][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-22 01:30:21.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-22 01:30:21.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:21.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:21.025][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-22 01:30:21.027][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-22 01:30:21.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:21.034][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:21.035][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-22 01:30:21.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-22 01:30:21.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:21.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:21.041][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:21.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:21.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:21.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:21.050][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:21.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:21.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:21.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:21.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:21.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:21.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:21.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:21.063][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:21.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:21.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:21.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:21.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:21.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:21.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:21.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:21.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:21.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:21.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:21.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:21.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:21.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:21.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:21.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:21.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:21.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:21.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:21.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:21.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:21.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:21.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:21.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:21.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:21.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:21.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:21.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:21.131][self$createEntryFromContent] Accession numbers: 66216.
biodb.TRACE[2024-07-22 01:30:21.133][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:21.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:21.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:21.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:21.142][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:21.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:21.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:21.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:21.150][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:21.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:21.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:21.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:21.160][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:21.161][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:21.163][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:21.172][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:21.173][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:21.174][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:21.175][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:21.177][private$loadEntries] Creating entries from ids [1]: "70860".
biodb.DEBUG[2024-07-22 01:30:21.179][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-22 01:30:21.194][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70860".
biodb.TRACE[2024-07-22 01:30:21.197][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-22 01:30:21.199][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70860.xml".
biodb.DEBUG[2024-07-22 01:30:21.203][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-22 01:30:21.205][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-22 01:30:21.206][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-22 01:30:21.208][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:21.209][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:21.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:21.225][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:21.226][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:21.227][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:21.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:21.233][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:21.235][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:21.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:21.237][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:21.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:21.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:21.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:21.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:21.245][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-22 01:30:21.247][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-22 01:30:21.249][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:21.252][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:21.253][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-22 01:30:21.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-22 01:30:21.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:21.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:21.259][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-22 01:30:21.260][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-22 01:30:21.264][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:21.266][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:21.268][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-22 01:30:21.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-22 01:30:21.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:21.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:21.277][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-22 01:30:21.280][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-22 01:30:21.283][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:21.285][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:21.287][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-22 01:30:21.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-22 01:30:21.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:21.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:21.297][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-22 01:30:21.299][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-22 01:30:21.301][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:21.302][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:21.305][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-22 01:30:21.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-22 01:30:21.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:21.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:21.315][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:21.318][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:21.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:21.323][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:21.324][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-22 01:30:21.326][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:21.327][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:21.328][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:21.330][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-22 01:30:21.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:21.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:21.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:21.339][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:21.341][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:21.344][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:21.355][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:21.358][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:21.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:21.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:21.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:21.376][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:21.378][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:21.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:21.381][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:21.384][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:21.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:21.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:21.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:21.398][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-22 01:30:21.401][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-22 01:30:21.404][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:21.407][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:21.410][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-22 01:30:21.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-22 01:30:21.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:21.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:21.420][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-22 01:30:21.430][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-22 01:30:21.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:21.434][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:21.436][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-22 01:30:21.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-22 01:30:21.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:21.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:21.449][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:21.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:21.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:21.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:21.458][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:21.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:21.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:21.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:21.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:21.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:21.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:21.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:21.485][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:21.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:21.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:21.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:21.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:21.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:21.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:21.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:21.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:21.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:21.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:21.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:21.543][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:21.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:21.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:21.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:21.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:21.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:21.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:21.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:21.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:21.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:21.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:21.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:21.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:21.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:21.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:21.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:21.611][self$createEntryFromContent] Accession numbers: 70860.
biodb.TRACE[2024-07-22 01:30:21.614][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:21.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:21.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:21.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:21.687][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:21.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:21.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:21.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:21.702][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:21.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:21.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:21.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:21.714][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:21.717][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:21.728][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:21.748][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:21.750][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:21.753][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:21.755][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:21.763][private$loadEntries] Creating entries from ids [1]: "70861".
biodb.DEBUG[2024-07-22 01:30:21.765][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-22 01:30:21.769][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70861".
biodb.TRACE[2024-07-22 01:30:21.783][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-22 01:30:21.787][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70861.xml".
biodb.DEBUG[2024-07-22 01:30:21.790][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-22 01:30:21.794][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-22 01:30:21.796][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-22 01:30:21.808][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:21.810][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:21.812][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:21.833][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:21.835][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:21.838][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:21.840][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:21.845][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:21.853][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:21.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:21.857][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:21.860][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:21.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:21.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:21.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:21.870][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-22 01:30:21.880][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-22 01:30:21.882][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:21.885][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:21.888][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-22 01:30:21.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-22 01:30:21.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:21.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:21.906][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-22 01:30:21.925][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-22 01:30:21.927][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:21.929][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:21.932][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-22 01:30:21.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-22 01:30:21.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:21.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:21.950][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-22 01:30:21.965][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-22 01:30:21.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:21.970][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:21.973][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-22 01:30:22.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-22 01:30:22.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:22.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:22.053][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-22 01:30:22.055][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-22 01:30:22.058][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:22.060][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:22.079][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-22 01:30:22.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-22 01:30:22.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:22.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:22.101][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:22.105][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:22.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:22.110][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:22.121][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-22 01:30:22.124][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:22.143][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:22.147][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:22.150][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-22 01:30:22.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:22.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:22.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:22.181][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:22.201][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:22.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:22.206][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:22.209][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:22.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:22.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:22.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:22.235][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:22.251][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:22.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:22.256][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:22.273][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:22.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:22.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:22.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:22.296][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-22 01:30:22.299][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-22 01:30:22.301][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:22.303][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:22.317][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-22 01:30:22.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-22 01:30:22.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:22.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:22.339][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-22 01:30:22.342][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-22 01:30:22.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:22.347][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:22.362][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-22 01:30:22.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-22 01:30:22.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:22.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:22.384][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:22.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:22.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:22.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:22.406][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:22.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:22.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:22.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:22.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:22.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:22.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:22.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:22.450][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:22.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:22.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:22.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:22.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:22.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:22.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:22.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:22.494][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:22.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:22.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:22.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:22.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:22.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:22.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:22.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:22.548][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:22.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:22.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:22.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:22.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:22.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:22.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:22.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:22.594][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:22.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:22.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:22.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:22.613][self$createEntryFromContent] Accession numbers: 70861.
biodb.TRACE[2024-07-22 01:30:22.615][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:22.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:22.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:22.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:22.633][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:22.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:22.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:22.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:22.660][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:22.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:22.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:22.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:22.684][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:22.686][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:22.704][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:22.737][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:22.740][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:22.742][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:22.745][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:22.767][private$loadEntries] Creating entries from ids [1]: "78662".
biodb.DEBUG[2024-07-22 01:30:22.769][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-22 01:30:22.773][cch$loadFileContent] Trying to load 1 files from cache: [1]: "78662".
biodb.TRACE[2024-07-22 01:30:22.787][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-22 01:30:22.790][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78662.xml".
biodb.DEBUG[2024-07-22 01:30:22.796][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-22 01:30:22.820][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-22 01:30:22.823][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-22 01:30:22.841][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:22.843][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:22.845][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:22.882][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:22.884][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:22.886][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:22.902][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:22.908][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:22.911][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:22.929][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:22.933][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:22.936][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:22.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:22.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:22.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:22.961][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-22 01:30:22.974][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-22 01:30:22.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:22.979][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:22.982][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-22 01:30:22.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-22 01:30:22.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:23.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:23.004][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-22 01:30:23.023][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-22 01:30:23.026][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:23.028][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:23.031][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-22 01:30:23.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-22 01:30:23.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:23.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:23.050][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-22 01:30:23.065][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-22 01:30:23.067][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:23.070][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:23.073][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-22 01:30:23.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-22 01:30:23.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:23.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:23.110][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-22 01:30:23.114][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-22 01:30:23.116][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:23.119][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:23.146][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-22 01:30:23.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-22 01:30:23.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:23.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:23.170][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:23.172][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:23.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:23.177][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:23.190][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-22 01:30:23.193][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:23.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:23.202][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:23.205][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-22 01:30:23.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:23.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:23.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:23.230][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:23.232][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:23.234][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:23.251][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:23.255][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:23.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:23.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:23.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:23.285][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:23.288][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:23.304][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:23.307][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:23.310][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:23.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:23.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:23.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:23.335][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-22 01:30:23.337][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-22 01:30:23.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:23.351][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:23.353][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-22 01:30:23.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-22 01:30:23.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:23.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:23.375][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-22 01:30:23.387][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-22 01:30:23.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:23.392][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:23.396][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-22 01:30:23.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-22 01:30:23.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:23.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:23.417][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:23.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:23.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:23.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:23.439][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:23.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:23.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:23.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:23.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:23.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:23.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:23.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:23.528][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:23.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:23.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:23.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:23.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:23.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:23.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:23.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:23.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:23.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:23.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:23.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:23.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:23.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:23.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:23.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:23.604][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:23.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:23.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:23.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:23.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:23.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:23.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:23.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:23.648][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:23.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:23.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:23.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:23.671][self$createEntryFromContent] Accession numbers: 78662.
biodb.TRACE[2024-07-22 01:30:23.685][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:23.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:23.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:23.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:23.707][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:23.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:23.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:23.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:23.729][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:23.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:23.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:23.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:23.751][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:23.754][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:23.756][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:23.776][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:23.778][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:23.796][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:23.799][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:23.801][private$loadEntries] Creating entries from ids [1]: "85084".
biodb.DEBUG[2024-07-22 01:30:23.803][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-22 01:30:23.819][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85084".
biodb.TRACE[2024-07-22 01:30:23.823][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-22 01:30:23.850][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85084.xml".
biodb.DEBUG[2024-07-22 01:30:23.853][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-22 01:30:23.856][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-22 01:30:23.859][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-22 01:30:23.875][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:23.877][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:23.879][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:23.904][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:23.919][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:23.921][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:23.923][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:23.940][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:23.943][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:23.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:23.948][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:23.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:23.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:23.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:23.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:23.974][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-22 01:30:23.983][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-22 01:30:23.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:23.987][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:23.990][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-22 01:30:24.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-22 01:30:24.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:24.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:24.009][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-22 01:30:24.020][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-22 01:30:24.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:24.025][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:24.028][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-22 01:30:24.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-22 01:30:24.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:24.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:24.049][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-22 01:30:24.060][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-22 01:30:24.063][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:24.065][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:24.068][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-22 01:30:24.076][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-22 01:30:24.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:24.084][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:24.095][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:24.097][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:24.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:24.102][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:24.114][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-22 01:30:24.133][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:24.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:24.138][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:24.141][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-22 01:30:24.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:24.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:24.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:24.154][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:24.177][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:24.181][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:24.184][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:24.187][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:24.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:24.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:24.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:24.218][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:24.221][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:24.223][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:24.226][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:24.242][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:24.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:24.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:24.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:24.266][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-22 01:30:24.268][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-22 01:30:24.270][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:24.272][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:24.287][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-22 01:30:24.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-22 01:30:24.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:24.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:24.311][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-22 01:30:24.314][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-22 01:30:24.316][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:24.320][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:24.336][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:24.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:24.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:24.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:24.357][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:24.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:24.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:24.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:24.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:24.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:24.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:24.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:24.397][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:24.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:24.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:24.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:24.423][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:24.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:24.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:24.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:24.446][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:24.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:24.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:24.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:24.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:24.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:24.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:24.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:24.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:24.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:24.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:24.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:24.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:24.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:24.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:24.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:24.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:24.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:24.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:24.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:24.580][self$createEntryFromContent] Accession numbers: 85084.
biodb.TRACE[2024-07-22 01:30:24.583][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:24.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:24.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:24.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:24.623][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:24.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:24.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:24.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:24.633][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:24.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:24.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:24.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:24.678][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:24.680][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:24.683][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:24.719][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:24.721][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:24.723][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:24.725][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:24.727][private$loadEntries] Creating entries from ids [1]: "85086".
biodb.DEBUG[2024-07-22 01:30:24.744][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-22 01:30:24.750][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85086".
biodb.TRACE[2024-07-22 01:30:24.765][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-22 01:30:24.778][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85086.xml".
biodb.DEBUG[2024-07-22 01:30:24.781][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-22 01:30:24.784][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-22 01:30:24.786][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-22 01:30:24.790][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:24.792][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:24.817][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:24.847][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:24.849][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:24.865][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:24.867][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:24.872][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:24.891][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:24.894][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:24.896][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:24.912][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:24.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:24.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:24.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:24.922][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-22 01:30:24.932][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-22 01:30:24.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:24.938][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:24.951][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-22 01:30:24.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-22 01:30:24.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:24.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:24.970][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-22 01:30:24.973][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-22 01:30:24.975][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:24.977][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:24.991][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-22 01:30:24.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-22 01:30:24.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:24.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:25.011][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-22 01:30:25.026][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-22 01:30:25.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:25.032][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:25.035][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-22 01:30:25.050][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-22 01:30:25.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:25.059][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:25.074][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:25.077][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:25.081][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:25.098][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:25.101][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-22 01:30:25.104][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:25.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:25.121][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:25.125][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-22 01:30:25.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:25.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:25.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:25.149][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:25.152][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:25.171][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:25.175][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:25.178][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:25.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:25.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:25.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:25.203][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:25.217][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:25.219][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:25.222][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:25.235][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:25.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:25.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:25.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:25.257][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-22 01:30:25.260][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-22 01:30:25.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:25.265][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:25.278][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-22 01:30:25.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-22 01:30:25.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:25.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:25.303][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-22 01:30:25.306][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-22 01:30:25.308][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:25.323][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:25.326][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:25.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:25.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:25.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:25.348][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:25.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:25.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:25.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:25.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:25.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:25.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:25.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:25.388][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:25.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:25.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:25.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:25.408][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:25.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:25.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:25.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:25.433][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:25.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:25.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:25.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:25.454][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:25.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:25.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:25.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:25.499][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:25.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:25.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:25.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:25.533][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:25.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:25.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:25.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:25.554][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:25.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:25.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:25.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:25.588][self$createEntryFromContent] Accession numbers: 85086.
biodb.TRACE[2024-07-22 01:30:25.591][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:25.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:25.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:25.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:25.612][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:25.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:25.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:25.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:25.628][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:25.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:25.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:25.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:25.648][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:25.650][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:25.653][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:25.687][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:25.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:25.695][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:25.698][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:25.711][private$loadEntries] Creating entries from ids [1]: "88123".
biodb.DEBUG[2024-07-22 01:30:25.714][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-22 01:30:25.718][cch$loadFileContent] Trying to load 1 files from cache: [1]: "88123".
biodb.TRACE[2024-07-22 01:30:25.741][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-22 01:30:25.756][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88123.xml".
biodb.DEBUG[2024-07-22 01:30:25.760][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-22 01:30:25.765][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-22 01:30:25.771][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-22 01:30:25.775][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:25.778][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:25.785][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:25.827][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:25.830][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:25.832][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:25.848][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:25.855][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:25.874][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:25.876][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:25.879][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:25.884][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:25.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:25.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:25.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:25.905][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-22 01:30:25.908][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-22 01:30:25.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:25.937][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:25.940][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-22 01:30:25.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-22 01:30:25.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:25.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:25.968][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-22 01:30:25.971][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-22 01:30:25.988][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:25.990][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:25.993][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-22 01:30:25.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-22 01:30:26.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:26.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:26.017][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-22 01:30:26.032][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-22 01:30:26.035][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:26.038][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:26.040][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-22 01:30:26.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-22 01:30:26.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:26.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:26.063][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-22 01:30:26.080][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-22 01:30:26.083][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:26.085][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:26.098][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-22 01:30:26.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-22 01:30:26.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:26.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:26.119][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:26.122][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:26.124][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:26.126][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:26.140][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-22 01:30:26.143][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:26.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:26.148][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:26.163][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-22 01:30:26.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:26.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:26.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:26.187][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:26.210][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:26.213][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:26.216][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:26.231][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:26.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:26.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:26.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:26.255][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:26.258][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:26.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:26.276][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:26.279][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:26.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:26.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:26.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:26.301][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-22 01:30:26.304][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-22 01:30:26.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:26.321][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:26.326][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-22 01:30:26.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-22 01:30:26.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:26.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:26.348][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-22 01:30:26.361][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-22 01:30:26.364][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:26.366][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:26.369][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-22 01:30:26.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-22 01:30:26.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:26.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:26.403][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:26.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:26.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:26.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:26.432][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:26.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:26.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:26.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:26.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:26.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:26.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:26.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:26.485][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:26.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:26.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:26.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:26.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:26.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:26.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:26.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:26.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:26.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:26.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:26.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:26.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:26.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:26.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:26.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:26.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:26.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:26.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:26.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:26.620][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:26.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:26.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:26.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:26.644][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:26.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:26.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:26.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:26.667][self$createEntryFromContent] Accession numbers: 88123.
biodb.TRACE[2024-07-22 01:30:26.683][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:26.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:26.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:26.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:26.709][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:26.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:26.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:26.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:26.735][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:26.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:26.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:26.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:26.768][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:26.771][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:26.773][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:26.797][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:26.809][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:26.812][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:26.814][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:26.817][private$loadEntries] Creating entries from ids [1]: "134117".
biodb.DEBUG[2024-07-22 01:30:26.830][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-22 01:30:26.835][cch$loadFileContent] Trying to load 1 files from cache: [1]: "134117".
biodb.TRACE[2024-07-22 01:30:26.839][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-22 01:30:26.864][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/134117.xml".
biodb.DEBUG[2024-07-22 01:30:26.869][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-22 01:30:26.873][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-22 01:30:26.887][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-22 01:30:26.892][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:26.896][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:26.906][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:26.953][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:26.974][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:26.976][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:26.979][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:26.998][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:27.001][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:27.004][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:27.007][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:27.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:27.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:27.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:27.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:27.044][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-22 01:30:27.048][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-22 01:30:27.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:27.053][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:27.071][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-22 01:30:27.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-22 01:30:27.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:27.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:27.095][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-22 01:30:27.098][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-22 01:30:27.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:27.115][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:27.118][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-22 01:30:27.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-22 01:30:27.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:27.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:27.152][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-22 01:30:27.176][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-22 01:30:27.188][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:27.191][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:27.195][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-22 01:30:27.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-22 01:30:27.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:27.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:27.210][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-22 01:30:27.213][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-22 01:30:27.219][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:27.222][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:27.224][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-22 01:30:27.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-22 01:30:27.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:27.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:27.235][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:27.238][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:27.248][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:27.251][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:27.254][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-22 01:30:27.256][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:27.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:27.271][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:27.274][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-22 01:30:27.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:27.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:27.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:27.300][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:27.303][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:27.314][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:27.317][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:27.321][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:27.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:27.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:27.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:27.341][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:27.346][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:27.350][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:27.355][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:27.359][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:27.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:27.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:27.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:27.372][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-22 01:30:27.376][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-22 01:30:27.379][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:27.381][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:27.384][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-22 01:30:27.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-22 01:30:27.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:27.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:27.400][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-22 01:30:27.403][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-22 01:30:27.405][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:27.407][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:27.410][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-22 01:30:27.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-22 01:30:27.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:27.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:27.420][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:27.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:27.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:27.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:27.426][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:27.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:27.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:27.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:27.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:27.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:27.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:27.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:27.444][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:27.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:27.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:27.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:27.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:27.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:27.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:27.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:27.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:27.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:27.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:27.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:27.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:27.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:27.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:27.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:27.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:27.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:27.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:27.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:27.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:27.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:27.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:27.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:27.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:27.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:27.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:27.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:27.493][self$createEntryFromContent] Accession numbers: 134117.
biodb.TRACE[2024-07-22 01:30:27.495][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:27.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:27.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:27.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:27.502][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:27.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:27.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:27.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:27.510][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:27.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:27.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:27.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:27.519][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:27.521][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:27.523][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:27.536][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:27.538][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:27.543][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:27.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:27.547][private$loadEntries] Creating entries from ids [1]: "138307".
biodb.DEBUG[2024-07-22 01:30:27.548][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-22 01:30:27.550][cch$loadFileContent] Trying to load 1 files from cache: [1]: "138307".
biodb.TRACE[2024-07-22 01:30:27.552][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-22 01:30:27.555][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/138307.xml".
biodb.DEBUG[2024-07-22 01:30:27.558][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-22 01:30:27.560][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-22 01:30:27.563][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-22 01:30:27.572][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:27.574][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:27.575][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:27.584][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:27.586][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:27.588][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:27.590][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:27.601][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:27.604][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:27.605][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:27.606][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:27.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:27.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:27.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:27.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:27.620][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-22 01:30:27.621][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-22 01:30:27.622][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:27.624][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:27.625][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-22 01:30:27.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-22 01:30:27.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:27.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:27.632][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-22 01:30:27.634][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-22 01:30:27.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:27.637][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:27.638][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-22 01:30:27.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-22 01:30:27.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:27.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:27.644][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-22 01:30:27.650][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-22 01:30:27.651][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:27.652][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:27.654][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-22 01:30:27.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-22 01:30:27.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:27.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:27.668][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-22 01:30:27.671][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-22 01:30:27.673][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:27.679][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:27.681][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-22 01:30:27.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-22 01:30:27.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:27.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:27.690][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:27.693][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:27.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:27.701][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:27.704][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-22 01:30:27.712][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:27.713][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:27.715][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:27.716][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-22 01:30:27.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:27.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:27.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:27.728][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:27.730][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:27.744][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:27.747][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:27.751][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:27.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:27.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:27.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:27.769][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:27.779][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:27.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:27.783][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:27.787][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:27.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:27.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:27.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:27.805][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-22 01:30:27.807][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-22 01:30:27.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:27.814][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:27.830][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-22 01:30:27.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-22 01:30:27.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:27.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:27.837][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-22 01:30:27.839][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-22 01:30:27.879][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:27.882][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:27.883][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-22 01:30:27.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-22 01:30:27.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:27.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:27.889][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:27.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:27.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:27.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:27.904][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:27.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:27.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:27.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:27.909][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:27.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:27.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:27.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:27.918][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:27.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:27.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:27.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:27.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:27.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:27.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:27.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:27.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:27.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:27.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:27.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:27.943][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:27.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:27.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:27.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:27.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:27.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:27.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:27.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:27.959][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:27.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:27.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:27.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:27.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:27.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:27.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:27.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:27.976][self$createEntryFromContent] Accession numbers: 138307.
biodb.TRACE[2024-07-22 01:30:27.979][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:27.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:27.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:27.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:27.989][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:27.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:27.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:27.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:27.998][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:28.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:28.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:28.005][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:28.006][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:28.008][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:28.018][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:28.020][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:28.023][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:28.024][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:28.026][private$loadEntries] Creating entries from ids [1]: "176803".
biodb.DEBUG[2024-07-22 01:30:28.028][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-22 01:30:28.030][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176803".
biodb.TRACE[2024-07-22 01:30:28.033][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-22 01:30:28.044][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176803.xml".
biodb.DEBUG[2024-07-22 01:30:28.046][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-22 01:30:28.049][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-22 01:30:28.051][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-22 01:30:28.053][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:28.055][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:28.057][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:28.066][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:28.067][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:28.069][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:28.071][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:28.078][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:28.081][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:28.083][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.085][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.090][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:28.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:28.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.097][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-22 01:30:28.098][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-22 01:30:28.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.101][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.103][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-22 01:30:28.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-22 01:30:28.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.111][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-22 01:30:28.113][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-22 01:30:28.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.115][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.124][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-22 01:30:28.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-22 01:30:28.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.136][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-22 01:30:28.138][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-22 01:30:28.140][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.143][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.149][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-22 01:30:28.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-22 01:30:28.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.156][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-22 01:30:28.157][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-22 01:30:28.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.162][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.164][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-22 01:30:28.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-22 01:30:28.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.174][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:28.177][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:28.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.181][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.184][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-22 01:30:28.187][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:28.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.196][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.198][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-22 01:30:28.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:28.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.206][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:28.222][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:28.224][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.226][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.228][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:28.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:28.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.241][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:28.243][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:28.245][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.254][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.257][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:28.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:28.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.266][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-22 01:30:28.269][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-22 01:30:28.271][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.274][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.277][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-22 01:30:28.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-22 01:30:28.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.289][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-22 01:30:28.291][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-22 01:30:28.294][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.296][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.299][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-22 01:30:28.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-22 01:30:28.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.310][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:28.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:28.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.315][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:28.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:28.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:28.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:28.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.343][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:28.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:28.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:28.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:28.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.361][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:28.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:28.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:28.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:28.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:28.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:28.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:28.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:28.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:28.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:28.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:28.408][self$createEntryFromContent] Accession numbers: 176803.
biodb.TRACE[2024-07-22 01:30:28.409][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:28.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:28.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.420][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:28.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:28.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.429][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:28.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:28.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:28.441][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:28.443][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:28.445][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:28.453][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:28.455][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:28.456][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:28.457][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:28.459][private$loadEntries] Creating entries from ids [1]: "176962".
biodb.DEBUG[2024-07-22 01:30:28.463][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-22 01:30:28.467][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176962".
biodb.TRACE[2024-07-22 01:30:28.470][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-22 01:30:28.474][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176962.xml".
biodb.DEBUG[2024-07-22 01:30:28.476][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-22 01:30:28.480][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-22 01:30:28.482][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-22 01:30:28.485][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:28.486][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:28.487][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:28.496][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:28.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:28.499][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:28.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:28.504][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:28.509][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:28.511][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.512][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:28.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:28.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.528][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-22 01:30:28.529][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-22 01:30:28.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.532][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.534][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-22 01:30:28.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-22 01:30:28.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.540][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-22 01:30:28.542][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-22 01:30:28.543][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.544][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.546][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-22 01:30:28.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-22 01:30:28.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.553][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-22 01:30:28.554][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-22 01:30:28.555][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.556][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.558][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-22 01:30:28.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-22 01:30:28.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.575][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-22 01:30:28.579][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-22 01:30:28.581][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.582][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.584][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-22 01:30:28.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-22 01:30:28.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.589][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:28.592][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:28.593][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.595][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.597][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-22 01:30:28.598][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:28.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.601][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.603][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-22 01:30:28.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:28.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.612][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:28.614][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:28.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.622][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.624][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:28.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:28.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.629][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:28.631][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:28.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.635][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.636][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:28.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:28.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.642][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-22 01:30:28.644][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-22 01:30:28.646][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.648][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.650][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-22 01:30:28.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-22 01:30:28.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.655][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-22 01:30:28.656][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-22 01:30:28.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.660][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.662][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-22 01:30:28.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-22 01:30:28.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.670][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:28.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:28.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.678][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:28.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:28.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.686][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:28.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:28.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.691][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:28.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:28.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:28.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:28.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:28.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:28.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:28.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:28.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:28.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:28.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:28.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:28.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.729][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:28.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:28.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:28.736][self$createEntryFromContent] Accession numbers: 176962.
biodb.TRACE[2024-07-22 01:30:28.737][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:28.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:28.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.743][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:28.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:28.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.752][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:28.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:28.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:28.757][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:28.758][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:28.762][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:28.780][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:28.781][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:28.783][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:28.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:28.788][private$loadEntries] Creating entries from ids [1]: "198655".
biodb.DEBUG[2024-07-22 01:30:28.790][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-22 01:30:28.792][cch$loadFileContent] Trying to load 1 files from cache: [1]: "198655".
biodb.TRACE[2024-07-22 01:30:28.793][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-22 01:30:28.795][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/198655.xml".
biodb.DEBUG[2024-07-22 01:30:28.797][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-22 01:30:28.799][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-22 01:30:28.801][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-22 01:30:28.803][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:28.804][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:28.805][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:28.816][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:28.818][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:28.819][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:28.821][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:28.825][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:28.828][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:28.830][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.831][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.832][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:28.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:28.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.838][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-22 01:30:28.839][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-22 01:30:28.841][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.843][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.846][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-22 01:30:28.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-22 01:30:28.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.851][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-22 01:30:28.853][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-22 01:30:28.854][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.855][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.862][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-22 01:30:28.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-22 01:30:28.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.868][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-22 01:30:28.869][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-22 01:30:28.870][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.873][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.875][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-22 01:30:28.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-22 01:30:28.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.883][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-22 01:30:28.884][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-22 01:30:28.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.892][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.894][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-22 01:30:28.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-22 01:30:28.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.899][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:28.901][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:28.903][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.911][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.913][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-22 01:30:28.915][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:28.916][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.918][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.919][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-22 01:30:28.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:28.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.930][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:28.931][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:28.933][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.934][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.953][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:28.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:28.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.959][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:28.960][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:28.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.963][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.970][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:28.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:28.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.980][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-22 01:30:28.985][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-22 01:30:28.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.988][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:28.989][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-22 01:30:28.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-22 01:30:28.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:28.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:29.000][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-22 01:30:29.002][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-22 01:30:29.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:29.014][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:29.016][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-22 01:30:29.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-22 01:30:29.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:29.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:29.026][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:29.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:29.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:29.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:29.033][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:29.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:29.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:29.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:29.042][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:29.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:29.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:29.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:29.056][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:29.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:29.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:29.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:29.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:29.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:29.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:29.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:29.069][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:29.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:29.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:29.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:29.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:29.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:29.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:29.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:29.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:29.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:29.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:29.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:29.088][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:29.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:29.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:29.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:29.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:29.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:29.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:29.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:29.115][self$createEntryFromContent] Accession numbers: 198655.
biodb.TRACE[2024-07-22 01:30:29.117][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:29.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:29.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:29.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:29.122][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:29.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:29.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:29.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:29.182][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:29.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:29.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:29.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:29.264][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:29.266][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:29.267][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:29.274][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:29.276][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:29.277][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:29.280][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:29.283][private$loadEntries] Creating entries from ids [1]: "215045".
biodb.DEBUG[2024-07-22 01:30:29.285][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-22 01:30:29.288][cch$loadFileContent] Trying to load 1 files from cache: [1]: "215045".
biodb.TRACE[2024-07-22 01:30:29.291][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-22 01:30:29.298][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/215045.xml".
biodb.DEBUG[2024-07-22 01:30:29.301][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-22 01:30:29.303][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-22 01:30:29.304][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-22 01:30:29.307][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:29.309][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:29.311][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:29.318][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:29.319][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:29.320][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:29.321][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:29.336][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:29.339][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:29.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:29.343][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:29.344][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:29.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:29.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:29.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:29.350][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-22 01:30:29.351][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-22 01:30:29.355][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:29.357][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:29.358][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-22 01:30:29.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-22 01:30:29.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:29.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:29.364][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-22 01:30:29.370][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-22 01:30:29.371][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:29.373][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:29.374][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-22 01:30:29.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-22 01:30:29.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:29.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:29.389][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-22 01:30:29.390][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-22 01:30:29.391][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:29.397][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:29.399][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-22 01:30:29.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-22 01:30:29.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:29.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:29.410][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-22 01:30:29.412][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-22 01:30:29.414][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:29.416][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:29.418][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-22 01:30:29.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-22 01:30:29.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:29.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:29.425][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:29.427][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:29.428][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:29.429][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:29.431][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-22 01:30:29.432][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:29.433][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:29.434][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:29.437][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-22 01:30:29.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:29.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:29.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:29.446][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:29.447][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:29.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:29.450][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:29.451][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:29.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:29.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:29.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:29.459][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:29.461][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:29.462][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:29.463][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:29.466][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:29.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:29.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:29.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:29.474][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-22 01:30:29.476][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-22 01:30:29.477][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:29.478][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:29.480][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-22 01:30:29.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-22 01:30:29.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:29.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:29.487][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-22 01:30:29.488][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-22 01:30:29.489][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:29.491][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:29.492][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-22 01:30:29.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-22 01:30:29.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:29.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:29.501][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:29.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:29.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:29.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:29.506][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:29.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:29.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:29.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:29.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:29.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:29.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:29.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:29.522][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:29.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:29.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:29.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:29.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:29.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:29.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:29.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:29.536][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:29.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:29.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:29.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:29.545][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:29.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:29.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:29.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:29.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:29.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:29.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:29.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:29.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:29.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:29.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:29.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:29.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:29.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:29.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:29.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:29.581][self$createEntryFromContent] Accession numbers: 215045.
biodb.TRACE[2024-07-22 01:30:29.583][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:29.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:29.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:29.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:29.595][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:29.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:29.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:29.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:29.604][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:29.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:29.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:29.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:29.657][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-22 01:30:29.662][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-22 01:30:29.664][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-07-22 01:30:29.667][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-22 01:30:29.670][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-07-22 01:30:29.674][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:29.675][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:29.676][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:29.688][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:29.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:29.692][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:29.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:29.695][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:29.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:29.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:29.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:29.704][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:29.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:29.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:29.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:29.715][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:29.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:29.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:29.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:29.723][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:29.725][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:29.726][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:29.737][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:29.739][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:29.740][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:29.742][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:29.743][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:29.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:29.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:29.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:29.750][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:29.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:29.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:29.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:29.760][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:29.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:29.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:29.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:29.768][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:29.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:29.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:29.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:29.773][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:29.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:29.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:29.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:29.779][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:29.781][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:29.783][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:29.789][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:29.790][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:29.791][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:29.793][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:29.795][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:29.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:29.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:29.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:29.814][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:29.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:29.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:29.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:29.820][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:29.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:29.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:29.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:29.834][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:29.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:29.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:29.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:29.861][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:29.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:29.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:29.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:29.876][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:29.878][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:29.879][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:29.893][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:29.895][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:29.900][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:29.902][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:29.905][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:29.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:29.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:29.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:29.924][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:29.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:29.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:29.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:29.933][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:29.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:29.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:29.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:29.942][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:29.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:29.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:29.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:29.952][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:29.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:29.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:29.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:29.964][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:29.966][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:29.968][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:29.982][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:29.983][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:29.984][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:29.985][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:29.987][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:29.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:29.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:29.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:29.995][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:29.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:29.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:29.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:30.001][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:30.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:30.007][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:30.009][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:30.011][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:30.019][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:30.022][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:30.024][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:30.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:30.029][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:30.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:30.038][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:30.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:30.046][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:30.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:30.055][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:30.057][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:30.065][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:30.079][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:30.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:30.082][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:30.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:30.085][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:30.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:30.096][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:30.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:30.103][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:30.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:30.114][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:30.116][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:30.118][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:30.134][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:30.136][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:30.140][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:30.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:30.151][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:30.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:30.160][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:30.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:30.170][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:30.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:30.175][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:30.177][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:30.180][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:30.189][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:30.192][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:30.197][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:30.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:30.202][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:30.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:30.210][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:30.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:30.224][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:30.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:30.230][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:30.232][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:30.234][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:30.250][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:30.252][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:30.260][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:30.261][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:30.263][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:30.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:30.268][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:30.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:30.282][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:30.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:30.292][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:30.295][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:30.297][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:30.309][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:30.311][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:30.312][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:30.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:30.315][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:30.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:30.321][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:30.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:30.326][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:30.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:30.333][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:30.334][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:30.335][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:30.341][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:30.342][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:30.343][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:30.344][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:30.346][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:30.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:30.351][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:30.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:30.356][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:30.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:30.363][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:30.364][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:30.366][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:30.373][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:30.375][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:30.376][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:30.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:30.379][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:30.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:30.392][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:30.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:30.399][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:30.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:30.405][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:30.407][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:30.408][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:30.416][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:30.418][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:30.419][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:30.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:30.424][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:30.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:30.430][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:30.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:30.435][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:30.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:30.443][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:30.445][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:30.446][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:30.452][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:30.454][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:30.457][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:30.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:30.461][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:30.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:30.469][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:30.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:30.477][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:30.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:30.482][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:30.483][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:30.484][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:30.495][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:30.497][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:30.506][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:30.507][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:30.509][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:30.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:30.518][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:30.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:30.527][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:30.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:30.545][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:30.547][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:30.549][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:30.571][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:30.573][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:30.574][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:30.576][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:30.577][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:30.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:30.590][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:30.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:30.603][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:30.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:30.608][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:30.614][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:30.615][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:30.621][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:30.628][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:30.629][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:30.631][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:30.632][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:30.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:30.646][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:30.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:30.657][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:30.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:30.662][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:30.663][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:30.664][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:30.675][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:30.677][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:30.678][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:30.684][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:30.688][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:30.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:30.701][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:30.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:30.715][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:30.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:30.720][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:30.721][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:30.723][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:30.739][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:30.741][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:30.742][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:30.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:30.749][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:30.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:30.757][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:30.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:30.769][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:30.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:30.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:30.806][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:30.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:30.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:30.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:30.816][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:30.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:30.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:30.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:30.821][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:30.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:30.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:30.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:30.833][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:30.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:30.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:30.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:30.841][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:30.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:30.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:30.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:30.919][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-22 01:30:30.925][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-22 01:30:30.927][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c5171beada848a87ef2ffa10427d9be3".
biodb.TRACE[2024-07-22 01:30:30.931][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-22 01:30:30.940][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c5171beada848a87ef2ffa10427d9be3.content".
biodb.DEBUG[2024-07-22 01:30:30.947][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-22 01:30:30.963][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-22 01:30:30.966][cch$loadFileContent] Trying to load 1 files from cache: [1]: "750e63ff76a843f016511fa71c89113e".
biodb.TRACE[2024-07-22 01:30:30.968][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-22 01:30:30.971][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/750e63ff76a843f016511fa71c89113e.content".
biodb.DEBUG[2024-07-22 01:30:30.990][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:30.992][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:30.993][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:31.009][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:31.011][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:31.013][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:31.015][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:31.019][private$loadEntries] Creating entries from ids [1]: "4648".
biodb.DEBUG[2024-07-22 01:30:31.022][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-22 01:30:31.025][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4648".
biodb.TRACE[2024-07-22 01:30:31.030][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-22 01:30:31.034][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4648.xml".
biodb.DEBUG[2024-07-22 01:30:31.037][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-22 01:30:31.039][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-22 01:30:31.041][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-22 01:30:31.045][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:31.047][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:31.050][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:31.061][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:31.062][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:31.063][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:31.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:31.067][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:31.069][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:31.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:31.073][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:31.079][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:31.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:31.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:31.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:31.088][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-22 01:30:31.090][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-22 01:30:31.092][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:31.094][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:31.096][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-22 01:30:31.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-22 01:30:31.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:31.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:31.102][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-22 01:30:31.104][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-22 01:30:31.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:31.110][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:31.113][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-22 01:30:31.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-22 01:30:31.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:31.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:31.120][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-22 01:30:31.122][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-22 01:30:31.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:31.130][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:31.132][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-22 01:30:31.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-22 01:30:31.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:31.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:31.145][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-22 01:30:31.148][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-22 01:30:31.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:31.152][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:31.155][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-22 01:30:31.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-22 01:30:31.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:31.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:31.164][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:31.166][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:31.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:31.169][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:31.172][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:31.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:31.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:31.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:31.191][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-22 01:30:31.194][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:31.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:31.211][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:31.213][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-22 01:30:31.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:31.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:31.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:31.220][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:31.232][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:31.234][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:31.236][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:31.239][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:31.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:31.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:31.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:31.245][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:31.247][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:31.249][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:31.250][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:31.254][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:31.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:31.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:31.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:31.271][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-22 01:30:31.273][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-22 01:30:31.284][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:31.288][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:31.290][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-22 01:30:31.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-22 01:30:31.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:31.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:31.340][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-22 01:30:31.359][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-22 01:30:31.362][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:31.364][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:31.378][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-22 01:30:31.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-22 01:30:31.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:31.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:31.388][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:31.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:31.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:31.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:31.409][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:31.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:31.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:31.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:31.430][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:31.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:31.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:31.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:31.452][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:31.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:31.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:31.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:31.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:31.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:31.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:31.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:31.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:31.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:31.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:31.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:31.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:31.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:31.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:31.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:31.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:31.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:31.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:31.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:31.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:31.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:31.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:31.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:31.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:31.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:31.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:31.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:31.525][self$createEntryFromContent] Accession numbers: 4648.
biodb.TRACE[2024-07-22 01:30:31.528][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:31.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:31.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:31.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:31.559][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:31.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:31.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:31.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:31.568][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:31.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:31.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:31.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:31.584][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:31.586][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:31.597][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:31.607][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:31.615][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:31.617][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:31.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:31.622][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:31.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:31.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:31.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:31.639][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:31.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:31.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:31.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:31.668][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:31.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:31.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:31.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:31.681][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:31.683][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:31.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:31.700][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:31.702][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:31.714][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:31.716][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:31.719][private$loadEntries] Creating entries from ids [1]: "62447".
biodb.DEBUG[2024-07-22 01:30:31.721][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-22 01:30:31.727][cch$loadFileContent] Trying to load 1 files from cache: [1]: "62447".
biodb.TRACE[2024-07-22 01:30:31.741][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-22 01:30:31.746][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62447.xml".
biodb.DEBUG[2024-07-22 01:30:31.752][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-22 01:30:31.758][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-22 01:30:31.761][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-22 01:30:31.773][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:31.776][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:31.778][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:31.797][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:31.799][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:31.806][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:31.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:31.812][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:31.814][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:31.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:31.823][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:31.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:31.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:31.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:31.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:31.840][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-22 01:30:31.842][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-22 01:30:31.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:31.846][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:31.849][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-22 01:30:31.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-22 01:30:31.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:31.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:31.863][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-22 01:30:31.873][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-22 01:30:31.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:31.877][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:31.880][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-22 01:30:31.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-22 01:30:31.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:31.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:31.894][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-22 01:30:31.902][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-22 01:30:31.904][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:31.907][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:31.909][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-22 01:30:31.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-22 01:30:31.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:31.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:31.922][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-22 01:30:31.924][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-22 01:30:31.927][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:31.935][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:31.938][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-22 01:30:31.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-22 01:30:31.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:31.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:31.949][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:31.952][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:31.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:31.964][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:31.968][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-22 01:30:31.971][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:31.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:31.975][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:31.978][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-22 01:30:31.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:31.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:31.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:31.999][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:32.001][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:32.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:32.010][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:32.014][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:32.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:32.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:32.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:32.031][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:32.034][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:32.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:32.058][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:32.061][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:32.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:32.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:32.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:32.091][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-22 01:30:32.094][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-22 01:30:32.097][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:32.108][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:32.126][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-22 01:30:32.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-22 01:30:32.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:32.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:32.144][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-22 01:30:32.147][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-22 01:30:32.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:32.158][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:32.160][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-22 01:30:32.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-22 01:30:32.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:32.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:32.171][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:32.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:32.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:32.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:32.187][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:32.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:32.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:32.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:32.207][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:32.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:32.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:32.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:32.225][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:32.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:32.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:32.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:32.244][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:32.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:32.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:32.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:32.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:32.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:32.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:32.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:32.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:32.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:32.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:32.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:32.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:32.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:32.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:32.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:32.381][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:32.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:32.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:32.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:32.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:32.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:32.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:32.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:32.418][self$createEntryFromContent] Accession numbers: 62447.
biodb.TRACE[2024-07-22 01:30:32.421][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:32.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:32.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:32.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:32.447][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:32.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:32.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:32.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:32.490][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:32.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:32.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:32.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:32.625][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-22 01:30:32.633][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-22 01:30:32.659][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-07-22 01:30:32.662][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-22 01:30:32.665][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-07-22 01:30:32.681][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:32.683][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:32.699][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:32.727][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:32.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:32.732][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:32.746][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:32.749][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:32.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:32.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:32.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:32.772][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:32.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:32.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:32.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:32.794][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:32.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:32.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:32.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:32.839][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:32.842][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:32.844][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:32.867][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:32.881][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:32.883][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:32.885][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:32.888][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:32.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:32.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:32.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:32.907][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:32.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:32.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:32.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:32.935][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:32.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:32.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:32.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:32.958][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:32.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:32.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:32.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:32.980][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:32.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:32.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:32.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:33.001][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:33.015][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:33.017][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:33.037][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:33.039][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:33.044][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:33.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:33.058][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:33.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:33.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:33.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:33.077][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:33.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:33.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:33.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:33.100][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:33.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:33.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:33.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:33.126][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:33.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:33.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:33.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:33.149][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:33.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:33.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:33.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:33.172][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:33.175][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:33.177][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:33.198][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:33.210][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:33.212][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:33.214][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:33.217][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:33.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:33.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:33.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:33.236][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:33.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:33.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:33.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:33.258][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:33.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:33.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:33.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:33.280][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:33.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:33.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:33.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:33.318][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:33.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:33.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:33.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:33.343][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:33.345][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:33.358][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:33.381][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:33.384][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:33.386][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:33.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:33.405][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:33.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:33.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:33.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:33.425][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:33.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:33.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:33.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:33.467][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:33.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:33.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:33.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:33.487][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:33.489][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:33.501][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:33.522][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:33.524][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:33.526][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:33.528][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:33.541][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:33.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:33.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:33.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:33.561][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:33.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:33.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:33.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:33.583][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:33.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:33.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:33.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:33.602][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:33.605][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:33.608][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:33.631][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:33.644][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:33.646][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:33.648][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:33.651][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:33.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:33.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:33.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:33.679][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:33.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:33.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:33.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:33.700][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:33.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:33.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:33.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:33.722][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:33.724][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:33.738][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:33.764][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:33.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:33.768][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:33.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:33.782][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:33.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:33.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:33.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:33.806][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:33.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:33.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:33.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:33.837][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:33.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:33.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:33.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:33.847][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:33.849][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:33.850][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:33.881][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:33.883][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:33.885][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:33.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:33.907][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:33.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:33.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:33.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:33.931][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:33.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:33.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:33.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:33.973][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:33.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:33.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:33.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:33.993][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:33.995][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:33.998][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:34.021][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:34.023][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:34.039][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:34.041][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:34.044][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:34.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:34.062][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:34.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:34.098][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:34.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:34.111][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:34.113][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:34.126][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:34.143][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:34.145][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:34.147][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:34.157][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:34.159][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:34.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:34.171][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:34.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:34.183][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:34.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:34.199][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:34.201][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:34.203][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:34.233][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:34.238][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:34.240][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:34.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:34.245][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:34.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:34.256][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:34.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:34.269][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:34.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:34.278][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:34.280][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:34.282][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:34.299][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:34.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:34.303][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:34.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:34.307][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:34.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:34.317][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:34.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:34.331][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:34.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:34.339][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:34.341][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:34.345][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:34.358][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:34.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:34.365][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:34.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:34.369][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:34.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:34.389][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:34.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:34.399][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:34.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:34.416][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:34.418][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:34.422][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:34.436][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:34.439][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:34.442][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:34.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:34.447][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:34.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:34.466][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:34.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:34.479][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:34.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:34.490][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:34.495][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:34.497][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:34.509][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:34.511][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:34.517][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:34.519][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:34.521][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:34.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:34.536][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:34.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:34.546][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:34.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:34.553][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:34.555][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:34.556][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:34.578][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:34.580][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:34.587][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:34.589][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:34.592][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:34.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:34.603][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:34.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:34.613][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:34.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:34.625][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:34.627][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:34.629][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:34.643][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:34.646][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:34.648][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:34.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:34.653][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:34.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:34.662][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:34.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:34.670][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:34.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:34.679][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:34.681][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:34.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:34.694][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:34.697][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:34.700][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:34.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:34.704][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:34.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:34.716][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:34.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:34.727][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:34.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:34.743][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:34.745][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:34.751][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:34.765][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:34.767][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:34.769][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:34.771][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:34.775][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:34.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:34.795][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:34.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:34.806][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:34.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:34.884][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-22 01:30:34.900][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-22 01:30:34.903][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-07-22 01:30:34.908][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-22 01:30:34.914][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-07-22 01:30:34.922][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:34.927][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:34.930][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:34.938][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:34.940][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:34.945][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:34.947][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:34.953][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:34.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:34.968][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:34.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:34.976][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:34.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:34.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:34.983][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:34.985][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:34.989][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:35.008][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:35.011][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:35.013][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:35.016][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:35.030][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:35.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:35.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:35.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:35.079][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:35.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:35.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:35.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:35.111][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:35.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:35.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:35.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:35.133][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:35.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:35.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:35.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:35.160][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:35.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:35.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:35.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:35.183][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:35.186][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:35.188][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:35.212][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:35.225][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:35.227][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:35.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:35.232][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:35.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:35.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:35.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:35.254][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:35.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:35.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:35.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:35.280][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:35.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:35.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:35.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:35.324][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:35.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:35.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:35.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:35.347][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:35.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:35.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:35.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:35.370][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:35.382][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:35.384][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:35.408][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:35.410][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:35.412][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:35.428][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:35.431][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:35.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:35.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:35.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:35.452][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:35.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:35.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:35.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:35.474][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:35.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:35.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:35.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:35.497][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:35.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:35.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:35.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:35.520][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:35.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:35.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:35.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:35.548][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:35.550][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:35.552][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:35.576][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:35.579][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:35.592][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:35.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:35.597][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:35.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:35.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:35.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:35.620][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:35.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:35.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:35.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:35.642][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:35.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:35.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:35.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:35.662][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:35.664][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:35.681][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:35.704][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:35.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:35.709][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:35.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:35.726][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:35.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:35.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:35.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:35.747][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:35.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:35.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:35.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:35.769][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:35.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:35.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:35.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:35.794][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:35.798][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:35.800][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:35.827][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:35.839][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:35.841][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:35.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:35.846][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:35.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:35.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:35.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:35.866][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:35.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:35.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:35.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:35.886][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:35.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:35.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:35.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:35.908][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:35.910][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:35.924][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:35.967][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:35.980][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:35.982][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:35.985][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:35.988][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:36.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:36.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:36.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:36.008][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:36.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:36.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:36.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:36.031][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:36.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:36.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:36.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:36.053][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:36.066][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:36.068][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:36.090][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:36.092][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:36.094][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:36.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:36.114][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:36.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:36.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:36.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:36.137][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:36.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:36.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:36.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:36.157][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:36.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:36.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:36.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:36.181][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:36.185][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:36.187][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:36.222][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:36.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:36.226][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:36.228][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:36.242][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:36.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:36.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:36.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:36.264][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:36.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:36.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:36.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:36.287][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:36.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:36.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:36.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:36.323][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:36.326][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:36.328][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:36.362][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:36.364][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:36.366][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:36.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:36.383][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:36.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:36.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:36.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:36.406][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:36.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:36.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:36.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:36.435][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:36.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:36.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:36.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:36.458][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:36.460][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:36.462][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:36.486][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:36.500][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:36.503][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:36.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:36.508][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:36.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:36.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:36.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:36.531][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:36.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:36.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:36.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:36.556][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:36.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:36.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:36.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:36.580][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:36.582][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:36.596][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:36.642][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:36.646][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:36.648][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:36.650][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:36.665][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:36.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:36.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:36.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:36.689][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:36.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:36.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:36.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:36.712][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:36.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:36.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:36.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:36.734][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:36.736][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:36.739][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:36.774][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:36.776][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:36.780][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:36.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:36.797][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:36.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:36.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:36.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:36.818][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:36.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:36.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:36.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:36.839][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:36.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:36.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:36.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:36.863][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:36.865][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:36.867][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:36.891][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:36.906][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:36.909][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:36.911][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:36.913][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:36.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:36.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:36.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:36.937][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:36.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:36.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:36.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:36.961][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:36.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:36.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:36.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:36.986][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:36.988][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:37.001][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:37.022][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:37.025][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:37.026][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:37.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:37.046][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:37.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:37.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:37.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:37.069][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:37.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:37.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:37.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:37.090][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:37.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:37.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:37.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:37.111][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:37.113][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:37.115][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:37.137][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:37.140][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:37.156][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:37.158][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:37.160][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:37.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:37.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:37.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:37.185][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:37.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:37.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:37.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:37.210][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:37.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:37.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:37.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:37.237][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:37.239][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:37.262][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:37.302][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:37.304][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:37.306][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:37.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:37.310][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:37.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:37.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:37.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:37.345][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:37.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:37.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:37.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:37.369][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:37.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:37.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:37.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:37.378][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:37.394][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:37.396][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:37.419][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:37.421][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:37.436][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:37.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:37.444][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:37.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:37.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:37.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:37.466][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:37.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:37.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:37.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:37.488][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:37.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:37.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:37.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:37.512][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:37.514][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:37.527][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:37.538][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:37.540][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:37.554][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:37.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:37.560][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:37.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:37.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:37.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:37.586][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:37.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:37.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:37.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:37.608][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:37.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:37.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:37.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:37.709][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-07-22 01:30:37.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-07-22 01:30:37.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:37.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-07-22 01:30:37.773][biodb::testThat]
biodb.INFO [2024-07-22 01:30:37.775][biodb::testThat] Running test function test_annotateMzValues_input_vector (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2024-07-22 01:30:37.778][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-22 01:30:37.793][biodb::testThat]
biodb.TRACE[2024-07-22 01:30:37.815][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-22 01:30:37.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-22 01:30:37.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:37.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:37.842][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:37.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:37.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:37.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:37.865][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:37.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:37.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:37.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:37.888][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:37.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:37.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:37.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:37.938][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:37.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:37.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:37.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:37.982][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:37.985][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:37.987][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:38.012][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:38.015][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:38.017][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:38.030][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:38.036][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-22 01:30:38.055][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-22 01:30:38.058][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-07-22 01:30:38.073][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-22 01:30:38.076][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-07-22 01:30:38.095][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:38.097][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:38.100][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:38.124][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:38.136][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:38.141][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:38.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:38.147][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:38.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:38.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:38.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:38.168][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:38.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:38.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:38.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:38.189][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:38.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:38.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:38.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:38.225][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-22 01:30:38.233][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-22 01:30:38.246][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-07-22 01:30:38.249][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-22 01:30:38.253][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-07-22 01:30:38.267][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:38.269][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:38.271][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:38.304][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:38.306][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:38.308][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:38.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:38.325][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:38.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:38.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:38.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:38.347][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:38.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:38.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:38.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:38.370][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:38.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:38.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:38.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:38.390][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:38.392][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:38.394][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:38.417][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:38.433][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:38.436][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:38.438][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:38.441][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:38.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:38.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:38.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:38.461][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:38.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:38.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:38.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:38.483][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:38.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:38.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:38.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:38.505][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-22 01:30:38.522][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:38.524][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:38.526][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:39.003][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:39.005][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:39.008][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:39.023][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:39.026][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:39.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:39.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:39.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:39.050][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:39.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:39.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:39.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:39.074][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:39.077][private$selectFields]
biodb.TRACE[2024-07-22 01:30:39.094][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-22 01:30:39.096][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-22 01:30:39.101][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:39.104][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:39.117][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:39.119][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:39.121][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:39.124][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:39.138][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:39.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:39.144][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:39.158][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:39.160][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:39.164][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:39.167][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:39.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:39.183][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:39.185][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-22 01:30:39.188][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:39.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:39.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:39.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:39.224][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:39.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:39.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:39.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:39.247][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:39.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:39.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:39.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:39.315][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2024-07-22 01:30:39.329][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:39.331][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:39.333][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:39.364][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:39.367][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:39.369][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:39.382][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:39.385][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:39.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:39.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:39.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:39.409][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:39.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:39.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:39.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:39.429][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:39.432][private$selectFields]
biodb.TRACE[2024-07-22 01:30:39.447][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-22 01:30:39.450][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-22 01:30:39.453][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:39.456][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:39.472][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:39.474][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:39.477][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:39.490][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:39.493][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:39.496][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:39.498][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:39.512][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:39.515][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:39.518][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:39.532][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:39.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:39.537][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:39.539][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-22 01:30:39.554][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:39.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:39.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:39.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:39.577][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:39.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:39.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:39.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:39.600][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:39.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:39.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:39.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:39.622][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-07-22 01:30:39.624][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:39.639][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:39.642][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:39.666][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:39.669][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:39.685][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:39.687][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:39.691][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:39.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:39.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:39.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:39.714][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:39.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:39.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:39.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:39.737][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:39.750][private$selectFields]
biodb.TRACE[2024-07-22 01:30:39.753][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-22 01:30:39.756][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-22 01:30:39.770][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:39.774][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:39.788][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:39.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:39.796][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:39.814][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:39.818][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:39.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:39.839][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:39.843][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:39.846][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:39.860][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:39.864][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:39.867][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:39.882][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:39.885][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-22 01:30:39.888][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:39.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:39.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:39.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:39.926][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:39.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:39.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:39.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:39.964][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:39.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:39.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:39.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:39.990][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2024-07-22 01:30:40.004][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-22 01:30:40.007][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-07-22 01:30:40.068][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:40.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:40.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:40.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:40.096][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:40.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:40.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:40.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:40.120][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:40.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:40.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:40.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:40.158][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:40.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:40.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:40.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:40.624][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:40.638][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:40.646][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:40.670][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:40.673][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:40.687][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:40.690][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:40.710][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-22 01:30:40.734][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-22 01:30:40.746][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-07-22 01:30:40.749][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-22 01:30:40.764][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-07-22 01:30:40.773][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-22 01:30:40.808][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-22 01:30:40.812][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-07-22 01:30:40.817][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-22 01:30:40.834][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-07-22 01:30:40.863][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:40.865][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:40.868][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:40.903][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:40.917][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:40.920][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:40.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:40.926][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:40.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:40.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:40.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:40.964][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:40.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:40.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:40.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:40.986][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:40.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:40.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:41.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:41.011][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:41.013][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:41.025][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:41.049][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:41.052][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:41.054][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:41.070][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:41.073][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:41.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:41.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:41.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:41.086][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:41.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:41.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:41.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:41.122][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:41.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:41.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:41.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:41.151][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:41.153][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:41.155][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:41.189][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:41.200][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:41.203][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:41.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:41.233][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:41.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:41.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:41.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:41.254][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:41.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:41.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:41.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:41.278][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:41.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:41.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:41.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:41.449][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-22 01:30:41.604][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:41.606][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:41.608][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:41.630][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:41.632][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:41.634][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:41.646][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:41.649][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:41.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:41.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:41.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:41.670][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:41.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:41.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:41.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:41.691][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:41.693][private$selectFields]
biodb.TRACE[2024-07-22 01:30:41.695][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-22 01:30:41.707][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-22 01:30:41.710][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:41.724][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:41.727][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:41.729][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:41.732][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:41.743][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:41.746][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:41.748][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:41.751][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:41.764][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:41.767][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:41.769][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:41.771][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:41.773][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:41.787][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:41.790][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-22 01:30:41.793][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:41.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:41.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:41.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:41.812][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:41.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:41.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:41.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:41.834][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:41.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:41.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:41.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:41.855][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-07-22 01:30:41.870][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:41.872][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:41.874][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:41.898][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:41.900][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:41.913][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:41.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:41.989][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:42.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:42.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:42.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:42.008][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:42.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:42.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:42.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:42.171][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:42.173][private$selectFields]
biodb.TRACE[2024-07-22 01:30:42.175][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-22 01:30:42.177][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-22 01:30:42.181][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:42.203][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:42.206][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:42.208][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:42.211][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:42.223][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:42.226][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:42.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:42.231][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:42.241][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:42.305][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:42.307][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:42.310][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:42.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:42.325][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:42.329][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-22 01:30:42.332][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:42.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:42.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:42.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:42.352][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:42.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:42.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:42.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:42.381][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:42.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:42.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:42.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:42.408][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-07-22 01:30:42.411][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:42.415][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:42.417][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:42.434][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:42.437][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:42.439][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:42.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:42.448][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:42.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:42.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:42.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:42.458][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:42.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:42.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:42.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:42.468][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:42.471][private$selectFields]
biodb.TRACE[2024-07-22 01:30:42.473][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-22 01:30:42.476][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-22 01:30:42.482][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:42.484][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:42.486][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:42.488][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:42.489][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:42.492][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:42.494][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:42.497][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:42.499][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:42.501][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:42.503][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:42.505][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:42.506][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:42.509][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:42.511][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:42.514][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-22 01:30:42.516][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:42.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:42.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:42.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:42.526][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:42.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:42.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:42.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:42.533][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:42.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:42.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:42.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:42.540][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-07-22 01:30:42.543][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-22 01:30:42.548][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-07-22 01:30:42.567][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-07-22 01:30:42.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-07-22 01:30:42.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:42.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-07-22 01:30:42.590][biodb::testThat]
biodb.INFO [2024-07-22 01:30:42.592][biodb::testThat] Running test function test_annotateMzValues_ppm_tol (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2024-07-22 01:30:42.596][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-22 01:30:42.598][biodb::testThat]
biodb.TRACE[2024-07-22 01:30:42.603][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-22 01:30:42.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-22 01:30:42.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:42.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:42.616][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:42.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:42.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:42.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:42.644][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:42.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:42.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:42.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:42.671][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:42.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:42.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:42.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:42.682][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:42.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:42.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:42.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:42.698][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:42.700][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:42.702][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:42.750][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:42.751][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:42.753][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:42.784][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:42.853][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-22 01:30:42.867][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-22 01:30:42.870][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-07-22 01:30:42.874][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-22 01:30:42.879][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-07-22 01:30:42.884][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:42.887][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:42.889][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:42.901][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:42.903][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:42.921][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:42.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:42.942][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:42.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:42.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:42.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:42.952][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:42.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:42.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:42.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:42.961][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:42.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:42.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:42.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:42.976][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-22 01:30:42.980][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-22 01:30:42.983][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-07-22 01:30:42.986][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-22 01:30:42.990][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-07-22 01:30:42.995][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:42.997][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:42.999][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:43.015][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:43.017][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:43.019][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:43.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:43.023][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:43.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:43.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:43.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:43.034][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:43.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:43.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:43.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:43.046][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:43.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:43.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:43.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:43.055][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:43.057][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:43.059][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:43.071][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:43.073][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:43.075][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:43.077][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:43.080][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:43.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:43.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:43.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:43.091][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:43.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:43.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:43.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:43.103][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:43.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:43.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:43.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:43.116][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-22 01:30:43.120][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:43.122][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:43.124][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:43.143][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:43.145][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:43.191][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:43.193][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:43.195][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:43.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:43.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:43.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:43.212][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:43.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:43.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:43.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:43.246][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:43.248][private$selectFields]
biodb.TRACE[2024-07-22 01:30:43.250][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-22 01:30:43.252][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-22 01:30:43.253][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:43.260][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:43.262][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:43.264][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:43.265][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:43.267][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:43.268][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:43.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:43.277][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:43.280][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:43.283][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:43.287][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:43.290][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:43.292][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:43.295][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:43.302][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-22 01:30:43.304][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:43.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:43.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:43.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:43.310][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:43.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:43.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:43.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:43.323][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:43.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:43.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:43.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:43.335][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2024-07-22 01:30:43.355][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:43.358][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:43.360][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:43.373][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:43.375][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:43.478][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:43.485][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:43.487][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:43.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:43.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:43.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:43.510][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:43.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:43.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:43.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:43.522][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:43.525][private$selectFields]
biodb.TRACE[2024-07-22 01:30:43.527][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-22 01:30:43.531][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-22 01:30:43.533][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:43.536][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:43.538][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:43.541][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:43.543][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:43.546][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:43.549][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:43.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:43.556][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:43.558][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:43.560][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:43.582][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:43.585][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:43.587][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:43.590][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:43.594][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-22 01:30:43.596][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:43.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:43.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:43.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:43.608][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:43.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:43.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:43.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:43.618][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:43.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:43.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:43.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:43.631][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-07-22 01:30:43.634][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:43.636][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:43.639][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:43.653][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:43.662][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:43.665][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:43.667][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:43.675][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:43.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:43.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:43.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:43.687][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:43.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:43.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:43.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:43.695][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:43.702][private$selectFields]
biodb.TRACE[2024-07-22 01:30:43.705][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-22 01:30:43.707][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-22 01:30:43.709][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:43.711][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:43.718][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:43.721][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:43.724][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:43.726][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:43.741][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:43.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:43.745][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:43.747][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:43.755][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:43.757][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:43.759][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:43.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:43.766][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:43.768][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-22 01:30:43.770][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:43.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:43.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:43.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:43.796][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:43.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:43.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:43.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:43.828][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:43.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:43.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:43.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:43.839][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2024-07-22 01:30:43.841][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-22 01:30:43.844][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-07-22 01:30:43.870][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:43.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:43.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:43.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:43.880][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:43.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:43.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:43.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:43.891][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:43.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:43.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:43.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:43.901][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:43.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:43.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:43.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:43.926][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:43.928][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:43.930][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:43.950][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:43.963][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:43.966][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:43.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:44.041][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-22 01:30:44.049][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-22 01:30:44.053][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-07-22 01:30:44.056][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-22 01:30:44.060][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-07-22 01:30:44.065][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-22 01:30:44.070][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-22 01:30:44.072][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-07-22 01:30:44.073][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-22 01:30:44.097][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-07-22 01:30:44.103][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:44.105][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:44.112][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:44.154][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:44.156][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:44.158][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:44.161][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:44.199][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:44.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:44.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:44.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:44.224][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:44.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:44.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:44.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:44.249][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:44.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:44.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:44.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:44.272][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:44.274][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:44.276][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:44.299][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:44.315][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:44.323][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:44.325][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:44.328][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:44.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:44.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:44.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:44.354][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:44.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:44.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:44.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:44.377][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:44.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:44.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:44.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:44.416][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:44.419][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:44.433][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:44.448][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:44.450][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:44.452][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:44.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:44.456][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:44.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:44.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:44.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:44.468][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:44.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:44.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:44.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:44.481][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:44.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:44.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:44.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:44.498][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-22 01:30:44.504][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:44.506][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:44.508][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:44.524][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:44.526][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:44.528][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:44.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:44.544][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:44.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:44.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:44.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:44.611][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:44.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:44.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:44.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:44.630][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:44.633][private$selectFields]
biodb.TRACE[2024-07-22 01:30:44.635][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-22 01:30:44.655][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-22 01:30:44.658][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:44.660][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:44.663][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:44.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:44.679][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:44.681][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:44.683][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:44.685][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:44.690][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:44.693][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:44.695][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:44.709][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:44.713][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:44.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:44.717][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:44.725][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-22 01:30:44.728][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:44.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:44.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:44.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:44.739][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:44.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:44.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:44.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:44.750][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:44.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:44.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:44.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:44.771][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-07-22 01:30:44.774][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:44.776][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:44.785][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:44.808][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:44.811][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:44.813][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:44.815][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:44.852][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:44.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:44.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:44.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:44.889][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:44.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:44.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:44.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:44.910][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:44.912][private$selectFields]
biodb.TRACE[2024-07-22 01:30:44.914][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-22 01:30:44.928][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-22 01:30:44.931][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:44.937][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:44.939][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:44.941][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:44.944][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:44.970][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:44.974][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:44.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:44.978][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:44.991][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:44.993][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:44.996][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:44.998][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:45.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:45.014][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:45.016][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-22 01:30:45.018][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:45.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:45.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:45.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:45.038][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:45.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:45.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:45.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:45.056][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:45.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:45.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:45.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:45.095][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-07-22 01:30:45.098][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:45.100][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:45.102][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:45.131][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:45.143][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:45.146][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:45.149][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:45.157][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:45.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:45.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:45.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:45.173][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:45.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:45.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:45.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:45.198][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:45.200][private$selectFields]
biodb.TRACE[2024-07-22 01:30:45.210][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-22 01:30:45.213][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-22 01:30:45.215][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:45.220][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:45.225][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:45.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:45.235][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:45.267][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:45.274][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:45.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:45.279][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:45.299][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:45.302][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:45.304][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:45.307][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:45.327][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:45.329][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:45.332][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-22 01:30:45.335][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:45.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:45.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:45.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:45.372][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:45.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:45.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:45.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:45.394][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:45.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:45.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:45.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:45.438][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-07-22 01:30:45.441][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-22 01:30:45.444][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-07-22 01:30:45.488][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-07-22 01:30:45.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-07-22 01:30:45.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:45.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-07-22 01:30:45.542][biodb::testThat]
biodb.INFO [2024-07-22 01:30:45.546][biodb::testThat] Running test function test_annotateMzValues_input_dataframe_untouched (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2024-07-22 01:30:45.561][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-22 01:30:45.563][biodb::testThat]
biodb.TRACE[2024-07-22 01:30:45.584][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-22 01:30:45.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-22 01:30:45.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:45.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:45.607][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:45.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:45.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:45.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:45.630][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:45.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:45.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:45.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:45.652][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:45.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:45.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:45.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:45.676][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:45.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:45.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:45.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:45.722][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:45.738][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:45.740][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:45.766][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:45.769][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:45.783][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:45.785][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:45.806][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-22 01:30:45.816][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-22 01:30:45.841][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-07-22 01:30:45.845][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-22 01:30:45.863][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-07-22 01:30:45.870][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:45.872][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:45.889][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:45.915][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:45.918][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:45.929][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:45.931][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:45.934][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:45.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:45.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:45.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:45.953][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:45.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:45.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:45.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:45.975][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:45.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:45.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:45.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:46.000][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-22 01:30:46.025][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-22 01:30:46.044][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-07-22 01:30:46.047][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-22 01:30:46.051][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-07-22 01:30:46.071][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:46.074][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:46.090][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:46.116][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:46.119][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:46.134][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:46.136][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:46.140][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:46.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:46.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:46.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:46.164][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:46.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:46.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:46.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:46.207][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:46.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:46.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:46.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:46.229][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:46.231][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:46.233][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:46.257][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:46.270][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:46.273][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:46.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:46.292][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:46.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:46.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:46.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:46.316][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:46.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:46.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:46.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:46.342][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:46.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:46.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:46.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:46.369][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-22 01:30:46.387][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:46.390][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:46.392][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:46.419][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:46.432][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:46.434][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:46.437][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:46.440][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:46.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:46.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:46.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:46.467][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:46.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:46.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:46.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:46.501][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:46.504][private$selectFields]
biodb.TRACE[2024-07-22 01:30:46.506][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-22 01:30:46.536][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-22 01:30:46.538][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:46.540][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:46.554][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:46.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:46.561][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:46.564][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:46.579][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:46.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:46.585][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:46.588][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:46.601][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:46.603][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:46.606][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:46.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:46.619][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:46.622][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-22 01:30:46.625][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:46.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:46.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:46.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:46.644][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:46.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:46.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:46.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:46.671][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:46.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:46.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:46.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:46.698][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2024-07-22 01:30:46.701][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:46.703][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:46.706][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:46.718][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:46.722][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:46.724][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:46.733][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:46.736][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:46.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:46.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:46.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:46.749][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:46.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:46.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:46.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:46.760][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:46.770][private$selectFields]
biodb.TRACE[2024-07-22 01:30:46.773][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-22 01:30:46.776][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-22 01:30:46.778][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:46.797][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:46.799][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:46.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:46.803][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:46.805][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:46.807][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:46.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:46.811][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:46.814][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:46.827][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:46.829][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:46.832][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:46.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:46.838][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:46.840][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-22 01:30:46.845][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:46.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:46.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:46.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:46.860][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:46.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:46.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:46.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:46.873][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:46.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:46.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:46.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:46.886][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-07-22 01:30:46.888][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:46.890][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:46.891][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:46.905][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:46.907][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:46.913][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:46.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:46.918][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:46.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:46.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:46.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:46.927][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:46.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:46.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:46.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:46.942][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:46.944][private$selectFields]
biodb.TRACE[2024-07-22 01:30:46.946][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-22 01:30:46.948][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-22 01:30:46.951][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:46.961][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:46.964][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:46.966][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:46.968][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:46.970][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:46.972][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:46.975][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:46.977][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:46.979][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:46.981][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:46.994][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:46.997][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:46.999][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:47.002][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:47.004][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-22 01:30:47.006][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:47.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:47.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:47.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:47.020][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:47.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:47.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:47.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:47.028][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:47.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:47.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:47.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:47.043][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2024-07-22 01:30:47.049][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-22 01:30:47.051][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-07-22 01:30:47.148][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:47.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:47.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:47.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:47.164][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:47.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:47.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:47.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:47.171][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:47.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:47.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:47.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:47.187][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:47.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:47.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:47.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:47.204][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:47.206][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:47.208][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:47.219][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:47.221][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:47.224][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:47.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:47.233][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-22 01:30:47.246][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-22 01:30:47.250][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-07-22 01:30:47.252][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-22 01:30:47.255][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-07-22 01:30:47.263][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-22 01:30:47.270][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-22 01:30:47.273][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-07-22 01:30:47.276][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-22 01:30:47.302][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-07-22 01:30:47.307][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:47.309][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:47.318][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:47.329][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:47.348][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:47.350][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:47.353][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:47.355][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:47.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:47.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:47.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:47.431][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:47.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:47.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:47.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:47.448][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:47.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:47.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:47.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:47.457][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:47.459][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:47.461][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:47.483][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:47.485][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:47.511][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:47.513][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:47.515][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:47.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:47.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:47.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:47.540][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:47.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:47.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:47.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:47.569][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:47.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:47.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:47.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:47.587][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:47.588][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:47.590][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:47.609][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:47.615][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:47.617][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:47.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:47.621][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:47.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:47.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:47.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:47.636][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:47.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:47.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:47.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:47.649][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:47.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:47.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:47.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:47.666][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-22 01:30:47.669][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:47.676][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:47.678][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:47.693][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:47.695][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:47.697][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:47.699][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:47.702][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:47.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:47.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:47.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:47.708][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:47.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:47.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:47.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:47.714][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:47.717][private$selectFields]
biodb.TRACE[2024-07-22 01:30:47.725][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-22 01:30:47.727][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-22 01:30:47.729][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:47.731][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:47.733][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:47.740][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:47.743][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:47.745][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:47.748][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:47.750][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:47.756][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:47.758][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:47.760][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:47.762][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:47.765][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:47.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:47.780][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:47.782][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-22 01:30:47.785][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:47.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:47.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:47.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:47.799][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:47.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:47.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:47.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:47.813][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:47.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:47.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:47.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:47.840][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-07-22 01:30:47.843][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:47.844][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:47.846][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:47.861][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:47.862][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:47.922][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:47.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:47.926][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:47.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:47.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:47.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:47.963][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:47.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:47.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:47.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:47.972][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:47.974][private$selectFields]
biodb.TRACE[2024-07-22 01:30:47.977][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-22 01:30:47.979][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-22 01:30:47.990][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:47.992][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:47.994][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:47.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:48.000][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:48.003][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:48.005][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:48.007][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:48.009][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:48.016][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:48.018][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:48.021][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:48.023][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:48.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:48.030][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:48.032][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-22 01:30:48.034][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:48.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:48.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:48.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:48.043][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:48.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:48.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:48.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:48.058][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:48.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:48.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:48.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:48.077][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-07-22 01:30:48.078][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:48.081][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:48.083][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:48.100][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:48.102][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:48.105][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:48.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:48.115][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:48.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:48.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:48.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:48.130][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:48.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:48.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:48.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:48.195][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:48.198][private$selectFields]
biodb.TRACE[2024-07-22 01:30:48.204][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-22 01:30:48.206][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-22 01:30:48.209][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:48.211][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:48.213][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:48.219][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:48.226][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:48.230][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:48.232][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:48.234][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:48.236][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:48.239][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:48.241][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-22 01:30:48.243][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:48.248][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:48.250][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:48.253][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:48.255][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-22 01:30:48.257][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:48.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:48.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:48.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:48.271][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:48.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:48.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:48.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:48.289][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:48.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:48.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:48.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:48.311][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-07-22 01:30:48.313][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-22 01:30:48.373][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-07-22 01:30:48.456][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-07-22 01:30:48.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-07-22 01:30:48.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:48.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-07-22 01:30:48.480][biodb::testThat]
biodb.INFO [2024-07-22 01:30:48.483][biodb::testThat] Running test function test.wrong.entry (" Wrong entry gives NULL ").
biodb.INFO [2024-07-22 01:30:48.487][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-22 01:30:48.489][biodb::testThat]
biodb.DEBUG[2024-07-22 01:30:48.499][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2024-07-22 01:30:48.503][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-22 01:30:48.507][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2024-07-22 01:30:48.512][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-07-22 01:30:48.514][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-07-22 01:30:48.517][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-22 01:30:48.519][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-07-22 01:30:48.521][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-07-22 01:30:48.531][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-07-22 01:30:48.544][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:48.546][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:48.548][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:48.591][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:48.593][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:48.595][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:48.597][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:48.603][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=WRONGA".
biodb.DEBUG[2024-07-22 01:30:48.609][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-07-22 01:30:48.614][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-07-22 01:30:48.619][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=WRONGA".
biodb.TRACE[2024-07-22 01:30:49.082][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=WRONGA).
biodb.DEBUG[2024-07-22 01:30:49.507][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-07-22 01:30:49.510][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b5b4e4941cdc7bc8ff5e29f921c1e9db.content"
biodb.TRACE[2024-07-22 01:30:49.537][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b5b4e4941cdc7bc8ff5e29f921c1e9db.request"
biodb.TRACE[2024-07-22 01:30:49.541][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/WRONGA.xml"
biodb.DEBUG[2024-07-22 01:30:49.549][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-07-22 01:30:49.551][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-22 01:30:49.554][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-22 01:30:49.557][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:49.559][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:49.561][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:49.568][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:49.569][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:49.574][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:49.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:49.578][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:49.580][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:49.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:49.584][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:49.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:49.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:49.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:49.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:49.595][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-22 01:30:49.596][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-22 01:30:49.602][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:49.605][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:49.607][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-22 01:30:49.609][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-22 01:30:49.611][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:49.614][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:49.617][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-22 01:30:49.619][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-22 01:30:49.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:49.623][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:49.625][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-22 01:30:49.627][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-22 01:30:49.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:49.631][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:49.633][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:49.636][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:49.638][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:49.640][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:49.643][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-22 01:30:49.645][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:49.647][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:49.649][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:49.652][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:49.658][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:49.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:49.660][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:49.662][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:49.663][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:49.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:49.666][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:49.668][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-22 01:30:49.671][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-22 01:30:49.672][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:49.674][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:49.675][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-22 01:30:49.677][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-22 01:30:49.678][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:49.679][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:49.684][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:49.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:49.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:49.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:49.693][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:49.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:49.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:49.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:49.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:49.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:49.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:49.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:49.713][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:49.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:49.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:49.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:49.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:49.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:49.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:49.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:49.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:49.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:49.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:49.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:49.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:49.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:49.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:49.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:49.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:49.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:49.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:49.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:49.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:49.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:49.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:49.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:49.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:49.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:49.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:49.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:49.794][self$createEntryFromContent] Accession numbers: .
biodb.DEBUG[2024-07-22 01:30:49.796][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2024-07-22 01:30:49.820][biodb::testThat]
biodb.INFO [2024-07-22 01:30:49.822][biodb::testThat] Running test function test.wrong.entry.among.good.ones (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2024-07-22 01:30:49.824][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-22 01:30:49.826][biodb::testThat]
biodb.DEBUG[2024-07-22 01:30:49.877][function(conn, opt)] IDS: [4]: "WRONGB, 15440, 2528, 7799"
biodb.DEBUG[2024-07-22 01:30:49.881][private$loadEntries] Creating entries from ids [3]: "WRONGB, 2528, 7799".
biodb.DEBUG[2024-07-22 01:30:49.891][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
biodb.TRACE[2024-07-22 01:30:49.896][cch$loadFileContent] Trying to load 3 files from cache: [3]: "WRONGB, 2528, 7799".
biodb.TRACE[2024-07-22 01:30:49.902][cch$loadFileContent] file.exist = [3]: "FALSE, TRUE, TRUE".
biodb.TRACE[2024-07-22 01:30:49.906][loadFileContents] Loaded 2 files from cache: [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2528.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7799.xml".
biodb.DEBUG[2024-07-22 01:30:49.908][conn$getEntryContent] 2 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-22 01:30:49.911][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-07-22 01:30:49.913][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-07-22 01:30:49.915][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-07-22 01:30:49.943][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:49.947][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:49.949][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:49.962][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:49.964][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:49.987][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:49.996][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:49.998][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=WRONGB".
biodb.DEBUG[2024-07-22 01:30:50.035][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-07-22 01:30:50.037][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-07-22 01:30:50.079][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=WRONGB".
biodb.TRACE[2024-07-22 01:30:50.519][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=WRONGB).
biodb.DEBUG[2024-07-22 01:30:50.925][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-07-22 01:30:50.928][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/32348f2b7cfb460a97c8a8aa145f239f.content"
biodb.TRACE[2024-07-22 01:30:50.937][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/32348f2b7cfb460a97c8a8aa145f239f.request"
biodb.TRACE[2024-07-22 01:30:50.941][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/WRONGB.xml"
biodb.DEBUG[2024-07-22 01:30:50.943][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-07-22 01:30:50.945][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2024-07-22 01:30:50.947][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2024-07-22 01:30:50.949][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:50.950][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:50.951][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:50.962][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:50.963][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:50.964][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:50.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:50.969][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:50.975][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:50.977][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:50.978][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:50.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:50.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:50.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:50.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:50.986][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-22 01:30:50.990][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-22 01:30:50.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:50.993][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:50.995][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-22 01:30:50.996][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-22 01:30:50.998][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:50.999][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.006][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-22 01:30:51.008][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-22 01:30:51.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.010][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.012][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-22 01:30:51.024][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-22 01:30:51.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.028][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.030][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:51.031][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:51.033][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.034][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.036][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-22 01:30:51.041][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:51.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.043][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.045][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:51.046][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:51.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.050][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.052][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:51.054][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:51.055][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.056][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.058][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-22 01:30:51.060][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-22 01:30:51.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.064][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.067][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-22 01:30:51.068][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-22 01:30:51.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.073][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.076][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:51.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:51.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.086][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:51.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:51.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:51.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:51.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.101][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:51.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:51.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:51.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:51.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:51.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:51.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.122][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:51.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:51.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:51.137][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:51.139][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:51.140][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:51.151][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:51.153][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:51.155][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:51.157][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:51.162][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:51.165][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:51.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.169][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:51.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:51.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.182][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-22 01:30:51.184][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-22 01:30:51.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.189][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.194][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-22 01:30:51.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-22 01:30:51.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.204][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-22 01:30:51.207][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-22 01:30:51.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.212][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.215][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-22 01:30:51.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-22 01:30:51.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.234][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-22 01:30:51.237][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-22 01:30:51.239][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.241][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.242][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-22 01:30:51.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-22 01:30:51.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.248][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-22 01:30:51.249][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-22 01:30:51.251][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.257][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.259][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-22 01:30:51.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-22 01:30:51.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.266][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:51.270][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:51.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.273][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.275][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:51.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:51.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.280][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-22 01:30:51.287][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:51.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.290][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.292][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-22 01:30:51.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:51.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.298][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:51.305][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:51.306][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.307][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.309][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:51.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:51.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.314][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:51.316][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:51.319][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.321][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.324][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:51.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:51.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.330][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-22 01:30:51.331][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-22 01:30:51.338][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.340][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.342][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-22 01:30:51.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-22 01:30:51.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.349][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-22 01:30:51.351][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-22 01:30:51.353][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.355][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.357][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-22 01:30:51.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-22 01:30:51.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.363][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:51.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:51.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.388][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:51.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:51.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:51.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:51.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.411][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:51.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:51.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:51.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:51.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:51.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:51.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.431][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:51.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:51.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:51.442][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:51.444][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:51.446][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:51.455][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:51.456][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:51.457][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:51.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:30:51.466][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:51.468][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:51.470][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.472][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.474][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:51.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:51.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.483][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-22 01:30:51.484][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-22 01:30:51.485][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.487][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.492][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-22 01:30:51.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-22 01:30:51.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.500][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-22 01:30:51.506][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-22 01:30:51.508][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.510][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.513][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-22 01:30:51.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-22 01:30:51.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.528][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-22 01:30:51.535][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-22 01:30:51.536][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.538][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.540][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-22 01:30:51.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-22 01:30:51.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.553][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-22 01:30:51.559][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-22 01:30:51.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.566][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.569][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-22 01:30:51.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-22 01:30:51.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.586][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:51.588][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:51.602][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.604][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.624][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:51.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:30:51.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.633][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-22 01:30:51.636][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:51.637][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.639][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.644][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-22 01:30:51.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:30:51.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.652][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:51.655][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:51.657][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.659][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.661][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:51.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:51.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.675][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:51.677][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:51.679][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.680][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.682][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:51.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:51.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.693][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-22 01:30:51.695][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-22 01:30:51.696][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.697][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.699][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-22 01:30:51.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-22 01:30:51.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.706][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-22 01:30:51.709][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-22 01:30:51.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.713][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.716][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-22 01:30:51.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-22 01:30:51.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.729][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:51.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:51.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.737][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:51.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:51.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:51.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:51.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.749][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:30:51.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:30:51.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:51.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:51.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:51.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:51.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.768][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:51.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:51.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:51.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:51.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.792][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:51.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:51.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:51.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:51.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:51.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:51.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.818][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:51.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:51.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:51.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:51.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.832][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:51.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:51.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:51.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:51.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:51.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:30:51.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:30:51.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:51.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:30:51.853][self$createEntryFromContent] Accession numbers: , 2528, 7799.
biodb.DEBUG[2024-07-22 01:30:51.854][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2024-07-22 01:30:51.856][function(conn, opt)] Entries: [4]: "NULL, <environment>, <environment>, <environment>"
biodb.INFO [2024-07-22 01:30:51.880][biodb::testThat]
biodb.INFO [2024-07-22 01:30:51.881][biodb::testThat] Running test function test.peak.table (" The peak table is correct. ").
biodb.INFO [2024-07-22 01:30:51.883][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-22 01:30:51.884][biodb::testThat]
biodb.INFO [2024-07-22 01:30:51.934][biodb::testThat]
biodb.INFO [2024-07-22 01:30:51.936][biodb::testThat] Running test function test.nb.entries (" Nb entries is positive. ").
biodb.INFO [2024-07-22 01:30:51.937][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-22 01:30:51.938][biodb::testThat]
biodb.INFO [2024-07-22 01:30:51.956][biodb::testThat]
biodb.INFO [2024-07-22 01:30:51.958][biodb::testThat] Running test function test.entry.ids (" We can get a list of entry ids. ").
biodb.INFO [2024-07-22 01:30:51.960][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-22 01:30:51.962][biodb::testThat]
biodb.DEBUG[2024-07-22 01:30:51.966][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=1*&searchCategory=CHEBI ID&maximumResults=100&starsCategory=ALL".
biodb.DEBUG[2024-07-22 01:30:51.971][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-07-22 01:30:51.976][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-07-22 01:30:51.979][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=1%2A&searchCategory=CHEBI%20ID&maximumResults=100&starsCategory=ALL".
biodb.TRACE[2024-07-22 01:30:52.487][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=1%2A&searchCategory=CHEBI%20ID&maximumResults=100&starsCategory=ALL).
biodb.DEBUG[2024-07-22 01:30:53.078][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-07-22 01:30:53.082][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/aed2cd6d5d221333c0a30a9f8dbc41b4.content"
biodb.TRACE[2024-07-22 01:30:53.093][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/aed2cd6d5d221333c0a30a9f8dbc41b4.request"
biodb.TRACE[2024-07-22 01:30:53.116][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:30:53.122][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:30:53.124][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:53.125][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:30:53.127][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:53.129][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:30:53.130][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:30:53.137][ef$get] fields variable is a list.
biodb.INFO [2024-07-22 01:30:53.154][biodb::testThat]
biodb.INFO [2024-07-22 01:30:53.156][biodb::testThat] Running test function test.annotateMzValues (" annotateMzValues() works correctly. ").
biodb.INFO [2024-07-22 01:30:53.158][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-22 01:30:53.160][biodb::testThat]
biodb.ERROR[2024-07-22 01:30:53.190][conn$annotateMzValues] No column named "mz" was found inside data frame.
biodb.ERROR[2024-07-22 01:30:53.231][ef$checkIsDefined] Field(s) "foo" is/are not defined.
biodb.INFO [2024-07-22 01:30:53.269][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-07-22 01:30:53.272][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2024-07-22 01:30:53.275][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2024-07-22 01:30:53.285][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-07-22 01:30:53.287][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:53.289][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:53.291][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:53.293][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:53.295][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:53.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-07-22 01:30:53.339][biodb::testContext]
biodb.INFO [2024-07-22 01:30:53.341][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-22 01:30:53.343][biodb::testContext] Test context - Test conversions
biodb.INFO [2024-07-22 01:30:53.345][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-22 01:30:53.348][biodb::testContext]
biodb.INFO [2024-07-22 01:30:53.356][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.12.0.
biodb.DEBUG[2024-07-22 01:30:53.365][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-07-22 01:30:53.376][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-22 01:30:53.379][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-07-22 01:30:53.381][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-07-22 01:30:53.383][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:53.385][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:53.387][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:53.389][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-07-22 01:30:53.392][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-07-22 01:30:53.394][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:53.396][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:53.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:53.400][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-07-22 01:30:53.407][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-07-22 01:30:53.412][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:53.419][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:53.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:53.425][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-07-22 01:30:53.427][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-07-22 01:30:53.429][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-07-22 01:30:53.431][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:53.439][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:53.441][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:53.443][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-07-22 01:30:53.445][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-07-22 01:30:53.447][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-07-22 01:30:53.449][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:53.451][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:53.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:53.456][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-07-22 01:30:53.464][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-07-22 01:30:53.466][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:53.469][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:53.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:53.473][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-07-22 01:30:53.476][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-07-22 01:30:53.478][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-07-22 01:30:53.481][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:53.487][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:53.489][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:53.491][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-07-22 01:30:53.494][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-07-22 01:30:53.499][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:53.501][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:53.503][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:53.506][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-07-22 01:30:53.508][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-07-22 01:30:53.510][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-07-22 01:30:53.512][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:53.515][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:53.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:53.524][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-07-22 01:30:53.526][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-07-22 01:30:53.529][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-07-22 01:30:53.531][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-07-22 01:30:53.540][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-07-22 01:30:53.543][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-07-22 01:30:53.546][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:53.562][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:53.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:53.593][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-07-22 01:30:53.596][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-07-22 01:30:53.598][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:53.600][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:53.613][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:53.618][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-07-22 01:30:53.621][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-07-22 01:30:53.635][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:53.666][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:53.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:53.671][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-07-22 01:30:53.674][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-07-22 01:30:53.676][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:53.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:53.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:53.694][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-07-22 01:30:53.696][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-07-22 01:30:53.710][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:53.713][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:53.717][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:53.721][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-07-22 01:30:53.735][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-07-22 01:30:53.738][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:53.742][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:53.744][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:53.746][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-07-22 01:30:53.767][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-07-22 01:30:53.804][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-07-22 01:30:53.806][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:53.808][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:53.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:53.812][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-07-22 01:30:53.818][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-07-22 01:30:53.820][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-07-22 01:30:53.822][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:53.824][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:53.837][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:53.840][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-07-22 01:30:53.845][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-22 01:30:53.854][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-07-22 01:30:53.857][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-22 01:30:53.859][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-22 01:30:53.861][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-22 01:30:53.864][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-22 01:30:53.877][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-22 01:30:53.880][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-22 01:30:53.882][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-22 01:30:53.897][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-22 01:30:53.900][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-22 01:30:53.902][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-07-22 01:30:53.904][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-22 01:30:53.918][self$setPropertyValue]
biodb.DEBUG[2024-07-22 01:30:53.921][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-22 01:30:53.923][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-22 01:30:53.923][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-22 01:30:53.923][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-22 01:30:53.923][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-22 01:30:53.923][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-22 01:30:53.925][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-22 01:30:53.927][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-22 01:30:53.934][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-22 01:30:53.936][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-22 01:30:53.939][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-22 01:30:53.941][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-22 01:30:53.949][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-22 01:30:53.951][self$setPropertyValue]
biodb.DEBUG[2024-07-22 01:30:53.953][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-22 01:30:53.955][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-22 01:30:53.957][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-22 01:30:53.972][self$setPropertyValue]
biodb.DEBUG[2024-07-22 01:30:53.976][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-07-22 01:30:53.981][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-22 01:30:54.000][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-07-22 01:30:54.002][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-22 01:30:54.004][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-22 01:30:54.006][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-22 01:30:54.020][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-22 01:30:54.024][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-22 01:30:54.026][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-22 01:30:54.028][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-22 01:30:54.043][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-22 01:30:54.046][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-22 01:30:54.048][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-07-22 01:30:54.050][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-22 01:30:54.063][self$setPropertyValue]
biodb.DEBUG[2024-07-22 01:30:54.066][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-22 01:30:54.068][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-22 01:30:54.068][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-22 01:30:54.068][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-22 01:30:54.068][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-22 01:30:54.068][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-22 01:30:54.071][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-22 01:30:54.083][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-22 01:30:54.085][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-22 01:30:54.088][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-22 01:30:54.090][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-22 01:30:54.092][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-22 01:30:54.104][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-22 01:30:54.107][self$setPropertyValue]
biodb.DEBUG[2024-07-22 01:30:54.109][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-22 01:30:54.111][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-22 01:30:54.127][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-22 01:30:54.129][self$setPropertyValue]
biodb.DEBUG[2024-07-22 01:30:54.132][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-07-22 01:30:54.149][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-22 01:30:54.152][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-07-22 01:30:54.154][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-22 01:30:54.157][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-22 01:30:54.171][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-22 01:30:54.173][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-22 01:30:54.176][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-22 01:30:54.178][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-22 01:30:54.191][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-22 01:30:54.193][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-22 01:30:54.196][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-22 01:30:54.198][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-07-22 01:30:54.200][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-22 01:30:54.211][self$setPropertyValue]
biodb.DEBUG[2024-07-22 01:30:54.213][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-22 01:30:54.215][self$setPropertyValue]
biodb.DEBUG[2024-07-22 01:30:54.218][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-22 01:30:54.227][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-22 01:30:54.229][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-22 01:30:54.231][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-22 01:30:54.233][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-22 01:30:54.242][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-22 01:30:54.245][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-22 01:30:54.247][self$setPropertyValue]
biodb.DEBUG[2024-07-22 01:30:54.249][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-22 01:30:54.251][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-22 01:30:54.264][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-22 01:30:54.266][self$setPropertyValue]
biodb.DEBUG[2024-07-22 01:30:54.269][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-07-22 01:30:54.284][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-22 01:30:54.287][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-07-22 01:30:54.289][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-22 01:30:54.292][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-22 01:30:54.295][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-22 01:30:54.297][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-22 01:30:54.299][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-22 01:30:54.302][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-22 01:30:54.324][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-22 01:30:54.327][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-22 01:30:54.329][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-22 01:30:54.331][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-07-22 01:30:54.334][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-22 01:30:54.343][self$setPropertyValue]
biodb.DEBUG[2024-07-22 01:30:54.345][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-22 01:30:54.347][self$setPropertyValue]
biodb.DEBUG[2024-07-22 01:30:54.349][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-22 01:30:54.356][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-22 01:30:54.359][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-22 01:30:54.361][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-22 01:30:54.363][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-22 01:30:54.365][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-22 01:30:54.375][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-22 01:30:54.378][self$setPropertyValue]
biodb.DEBUG[2024-07-22 01:30:54.380][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-22 01:30:54.382][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-22 01:30:54.384][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-22 01:30:54.390][self$setPropertyValue]
biodb.DEBUG[2024-07-22 01:30:54.393][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-22 01:30:54.395][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:54.397][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:54.407][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:54.410][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:54.412][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:54.414][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:54.424][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:54.426][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:54.428][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:54.431][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:54.433][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:54.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:54.451][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:54.454][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:54.456][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:54.468][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:54.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:54.472][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:54.474][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:54.476][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:54.486][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:54.489][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:54.491][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:54.493][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:54.495][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:54.504][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:54.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:54.508][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:54.510][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:54.512][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:54.520][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:54.522][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:54.524][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:54.526][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:54.528][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:54.541][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:54.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:54.548][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:54.550][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:54.558][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:54.560][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:54.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:54.564][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:54.566][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:54.575][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:54.577][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:54.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:54.582][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:54.595][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:54.601][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:54.603][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:54.605][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:54.607][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:54.619][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:54.621][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:54.623][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:54.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:54.628][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:54.637][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:54.639][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:54.641][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:54.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:54.645][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:54.656][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:54.658][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:54.660][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:54.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:54.664][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:54.669][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:54.671][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:54.673][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:54.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:54.676][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:54.688][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:54.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:54.692][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:54.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:54.696][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:54.706][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:54.708][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:54.710][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:54.712][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:54.714][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:54.727][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:54.734][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:54.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:54.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:54.740][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-07-22 01:30:54.751][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-07-22 01:30:54.754][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-07-22 01:30:54.758][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-07-22 01:30:54.767][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-07-22 01:30:54.771][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-07-22 01:30:54.774][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-07-22 01:30:54.779][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-07-22 01:30:54.783][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-07-22 01:30:54.786][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-07-22 01:30:54.797][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-22 01:30:54.801][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-07-22 01:30:54.808][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-07-22 01:30:54.813][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-07-22 01:30:54.817][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-07-22 01:30:54.826][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-07-22 01:30:54.830][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-07-22 01:30:54.833][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-07-22 01:30:54.849][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-07-22 01:30:54.852][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-07-22 01:30:54.862][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-07-22 01:30:54.866][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-07-22 01:30:54.869][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-07-22 01:30:54.878][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-07-22 01:30:54.882][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-07-22 01:30:54.885][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-07-22 01:30:54.893][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-07-22 01:30:54.900][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-07-22 01:30:54.903][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-07-22 01:30:54.915][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-07-22 01:30:54.919][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-07-22 01:30:54.928][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-07-22 01:30:54.931][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-07-22 01:30:54.935][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-07-22 01:30:54.941][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-07-22 01:30:54.945][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-07-22 01:30:54.948][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-07-22 01:30:54.959][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-07-22 01:30:54.964][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-07-22 01:30:54.968][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-07-22 01:30:54.972][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-07-22 01:30:54.975][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-07-22 01:30:54.979][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-07-22 01:30:54.985][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-07-22 01:30:54.988][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-07-22 01:30:54.992][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-07-22 01:30:55.003][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-07-22 01:30:55.006][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-07-22 01:30:55.010][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-07-22 01:30:55.022][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-07-22 01:30:55.025][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-07-22 01:30:55.035][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-07-22 01:30:55.039][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-07-22 01:30:55.043][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-07-22 01:30:55.050][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-07-22 01:30:55.055][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-07-22 01:30:55.059][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-07-22 01:30:55.063][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-07-22 01:30:55.067][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-07-22 01:30:55.070][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-07-22 01:30:55.075][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-07-22 01:30:55.079][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-07-22 01:30:55.093][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-07-22 01:30:55.100][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-07-22 01:30:55.113][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-07-22 01:30:55.116][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-07-22 01:30:55.120][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-07-22 01:30:55.124][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-07-22 01:30:55.127][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-07-22 01:30:55.131][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-07-22 01:30:55.134][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-07-22 01:30:55.138][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-07-22 01:30:55.141][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-07-22 01:30:55.147][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-07-22 01:30:55.154][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-07-22 01:30:55.158][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-07-22 01:30:55.162][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-07-22 01:30:55.167][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-07-22 01:30:55.170][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-07-22 01:30:55.174][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-07-22 01:30:55.178][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-07-22 01:30:55.182][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-07-22 01:30:55.186][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-07-22 01:30:55.192][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-07-22 01:30:55.195][initialize] This is biodb version 1.12.0.
biodb.DEBUG[2024-07-22 01:30:55.198][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-22 01:30:55.201][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:55.203][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:55.205][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:55.207][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:55.212][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:55.215][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:55.217][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:55.220][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:55.222][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:55.229][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:55.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:55.234][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:55.236][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:55.241][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:55.243][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:55.245][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:55.247][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:55.249][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:55.252][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:55.254][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:55.257][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:55.259][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:55.262][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:55.266][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:55.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:55.271][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:55.273][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:55.277][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:55.279][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:55.281][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:55.284][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:55.290][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:55.292][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:55.294][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:55.296][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:55.300][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:55.303][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:55.306][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:55.308][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:55.310][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:55.315][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:55.317][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:55.319][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:55.321][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:55.323][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:55.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:55.330][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:55.332][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:55.334][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:55.338][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:55.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:55.342][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:55.344][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:55.347][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:55.352][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:55.354][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:55.358][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:55.360][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:55.365][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:55.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:55.370][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:55.372][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:55.374][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:55.380][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:55.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:55.384][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:55.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:55.390][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:55.392][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:55.395][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:55.397][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:55.399][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:55.404][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:55.407][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:55.410][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:55.412][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:55.417][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:55.419][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:55.422][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:55.424][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:55.426][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:55.434][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:55.436][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:55.438][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:55.441][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:55.445][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:55.448][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:55.450][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:55.452][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:55.456][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:55.460][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:55.462][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:55.464][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:55.466][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:55.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:55.474][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:55.476][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:55.478][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:55.481][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:55.483][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:55.486][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:55.489][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:55.491][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:55.494][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:55.496][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:55.498][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:55.501][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:55.503][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:55.507][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:55.509][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:55.511][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:55.513][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:55.517][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:55.519][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:55.521][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:55.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:55.525][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:55.526][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:55.529][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:55.531][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:55.534][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:55.536][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:55.539][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:55.544][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodbChebi/definitions.yml".
biodb.DEBUG[2024-07-22 01:30:55.549][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2024-07-22 01:30:55.555][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-22 01:30:55.557][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-07-22 01:30:55.561][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-22 01:30:55.564][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-22 01:30:55.566][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-22 01:30:55.569][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-22 01:30:55.572][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-07-22 01:30:55.575][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2024-07-22 01:30:55.578][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-07-22 01:30:55.581][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-22 01:30:55.587][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-22 01:30:55.589][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2024-07-22 01:30:55.592][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-22 01:30:55.594][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-07-22 01:30:55.594][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2024-07-22 01:30:55.594][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-07-22 01:30:55.594][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-07-22 01:30:55.594][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-07-22 01:30:55.594][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2024-07-22 01:30:55.594][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-07-22 01:30:55.594][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-07-22 01:30:55.594][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2024-07-22 01:30:55.594][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2024-07-22 01:30:55.594][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-07-22 01:30:55.598][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-07-22 01:30:55.601][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-22 01:30:55.601][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-22 01:30:55.601][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-22 01:30:55.604][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-07-22 01:30:55.607][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-22 01:30:55.611][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-22 01:30:55.613][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-22 01:30:55.616][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-22 01:30:55.618][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-22 01:30:55.621][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-22 01:30:55.624][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-07-22 01:30:55.624][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2024-07-22 01:30:55.626][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-22 01:30:55.629][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-22 01:30:55.633][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-07-22 01:30:55.636][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2024-07-22 01:30:55.636][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2024-07-22 01:30:55.640][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-07-22 01:30:55.647][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-22 01:30:55.651][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2024-07-22 01:30:55.655][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-07-22 01:30:55.661][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-07-22 01:30:55.665][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-07-22 01:30:55.673][super$initialize] Initialize connector chebi.
biodb.DEBUG[2024-07-22 01:30:55.676][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2024-07-22 01:30:55.681][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2024-07-22 01:30:55.685][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2024-07-22 01:30:55.690][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-22 01:30:55.692][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-22 01:30:55.696][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2024-07-22 01:30:55.699][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2024-07-22 01:30:55.702][biodb::testThat]
biodb.INFO [2024-07-22 01:30:55.704][biodb::testThat] Running test function test_chebi_convCasToChebi (" convCasToChebi() works. ").
biodb.INFO [2024-07-22 01:30:55.712][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-22 01:30:55.715][biodb::testThat]
biodb.DEBUG[2024-07-22 01:30:55.724][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2024-07-22 01:30:55.733][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-22 01:30:55.738][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2024-07-22 01:30:55.742][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-22 01:30:55.747][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2024-07-22 01:30:55.754][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-07-22 01:30:55.767][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-22 01:30:55.770][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2024-07-22 01:30:55.772][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-22 01:30:55.777][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2024-07-22 01:30:55.781][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:55.783][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:55.785][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:55.799][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:55.801][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:55.803][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:55.805][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:55.818][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-07-22 01:30:55.827][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-22 01:30:55.831][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2024-07-22 01:30:55.834][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-22 01:30:55.838][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2024-07-22 01:30:55.841][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:55.844][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:55.847][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:55.860][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:55.863][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:55.866][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:55.868][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:55.918][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:55.920][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:55.922][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:55.934][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:55.937][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:55.939][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:55.944][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:55.961][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-07-22 01:30:55.971][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-22 01:30:55.975][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2024-07-22 01:30:55.978][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-22 01:30:55.981][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2024-07-22 01:30:55.984][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:55.987][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:55.989][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:55.998][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:56.000][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:56.002][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:56.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:56.008][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-07-22 01:30:56.016][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-22 01:30:56.019][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2024-07-22 01:30:56.022][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-22 01:30:56.027][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2024-07-22 01:30:56.030][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:56.032][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:56.034][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:56.046][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:56.050][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:56.053][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:56.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:56.058][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:56.062][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:56.066][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:56.082][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:56.085][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:56.087][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:56.089][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:56.107][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-07-22 01:30:56.114][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-22 01:30:56.117][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2024-07-22 01:30:56.121][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-22 01:30:56.127][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2024-07-22 01:30:56.130][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:56.135][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:56.138][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:56.152][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:56.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:56.156][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:56.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:56.164][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-07-22 01:30:56.174][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-22 01:30:56.177][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2024-07-22 01:30:56.185][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-22 01:30:56.188][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2024-07-22 01:30:56.192][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:56.196][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:56.198][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:56.212][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:56.214][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:56.216][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:56.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:56.226][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=14215-68-0&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-07-22 01:30:56.235][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-22 01:30:56.238][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70e3912746e7e39b39fbbffe6c90b502".
biodb.TRACE[2024-07-22 01:30:56.243][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-22 01:30:56.251][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70e3912746e7e39b39fbbffe6c90b502.content".
biodb.DEBUG[2024-07-22 01:30:56.255][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:56.257][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:56.259][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:56.272][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:56.276][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:56.279][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:56.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-07-22 01:30:56.302][biodb::testThat]
biodb.INFO [2024-07-22 01:30:56.306][biodb::testThat] Running test function test_chebi_convInchiToChebi (" convInchiToChebi() works. ").
biodb.INFO [2024-07-22 01:30:56.308][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-22 01:30:56.315][biodb::testThat]
biodb.DEBUG[2024-07-22 01:30:56.325][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=InChI=1S/C15H24/c1-9(2)11-7-8-15(4)12-6-5-10(3)14(15)13(11)12/h5,9,11-14H,6-8H2,1-4H3/t11?,12?,13?,14?,15-/m0/s1&searchCategory=INCHI/INCHI KEY&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-07-22 01:30:56.336][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-07-22 01:30:56.339][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-07-22 01:30:56.345][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=InChI%3D1S%2FC15H24%2Fc1-9%282%2911-7-8-15%284%2912-6-5-10%283%2914%2815%2913%2811%2912%2Fh5%2C9%2C11-14H%2C6-8H2%2C1-4H3%2Ft11%3F%2C12%3F%2C13%3F%2C14%3F%2C15-%2Fm0%2Fs1&searchCategory=INCHI%2FINCHI%20KEY&maximumResults=10&starsCategory=ALL".
biodb.TRACE[2024-07-22 01:30:56.765][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=InChI%3D1S%2FC15H24%2Fc1-9%282%2911-7-8-15%284%2912-6-5-10%283%2914%2815%2913%2811%2912%2Fh5%2C9%2C11-14H%2C6-8H2%2C1-4H3%2Ft11%3F%2C12%3F%2C13%3F%2C14%3F%2C15-%2Fm0%2Fs1&searchCategory=INCHI%2FINCHI%20KEY&maximumResults=10&starsCategory=ALL).
biodb.DEBUG[2024-07-22 01:30:57.170][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-07-22 01:30:57.174][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64007787a4f3864bb479683766386808.content"
biodb.TRACE[2024-07-22 01:30:57.185][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64007787a4f3864bb479683766386808.request"
biodb.DEBUG[2024-07-22 01:30:57.190][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:57.192][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:57.194][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:57.204][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:57.206][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:57.208][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:57.210][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:57.220][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=VLXDPFLIRFYIME-MWHZVNNOSA-N&searchCategory=INCHI/INCHI KEY&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-07-22 01:30:57.228][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-07-22 01:30:57.231][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-07-22 01:30:57.235][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=VLXDPFLIRFYIME-MWHZVNNOSA-N&searchCategory=INCHI%2FINCHI%20KEY&maximumResults=10&starsCategory=ALL".
biodb.TRACE[2024-07-22 01:30:57.645][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=VLXDPFLIRFYIME-MWHZVNNOSA-N&searchCategory=INCHI%2FINCHI%20KEY&maximumResults=10&starsCategory=ALL).
biodb.DEBUG[2024-07-22 01:30:58.057][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-07-22 01:30:58.062][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7547b08b3ebd50447d61026ab0af8d63.content"
biodb.TRACE[2024-07-22 01:30:58.071][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7547b08b3ebd50447d61026ab0af8d63.request"
biodb.DEBUG[2024-07-22 01:30:58.076][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:30:58.078][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:58.080][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:58.090][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:58.093][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:58.095][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:58.097][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-07-22 01:30:58.108][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-07-22 01:30:58.111][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2024-07-22 01:30:58.113][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2024-07-22 01:30:58.115][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-07-22 01:30:58.117][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:58.119][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:58.121][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:58.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:58.125][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:58.127][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-07-22 01:30:58.135][biodb::testContext]
biodb.INFO [2024-07-22 01:30:58.137][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-22 01:30:58.139][biodb::testContext] Test context - Test web services
biodb.INFO [2024-07-22 01:30:58.142][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-22 01:30:58.144][biodb::testContext]
biodb.INFO [2024-07-22 01:30:58.148][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.12.0.
biodb.DEBUG[2024-07-22 01:30:58.151][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-07-22 01:30:58.156][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-22 01:30:58.158][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-07-22 01:30:58.161][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-07-22 01:30:58.163][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:58.164][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:58.165][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:58.167][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-07-22 01:30:58.168][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-07-22 01:30:58.169][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:58.171][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:58.173][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:58.177][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-07-22 01:30:58.179][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-07-22 01:30:58.181][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:58.183][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:58.184][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:58.186][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-07-22 01:30:58.188][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-07-22 01:30:58.190][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-07-22 01:30:58.191][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:58.192][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:58.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:58.196][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-07-22 01:30:58.199][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-07-22 01:30:58.200][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-07-22 01:30:58.201][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:58.203][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:58.204][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:58.205][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-07-22 01:30:58.206][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-07-22 01:30:58.208][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:58.210][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:58.214][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:58.217][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-07-22 01:30:58.219][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-07-22 01:30:58.222][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-07-22 01:30:58.224][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:58.226][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:58.228][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:58.230][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-07-22 01:30:58.233][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-07-22 01:30:58.235][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:58.237][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:58.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:58.243][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-07-22 01:30:58.246][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-07-22 01:30:58.248][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-07-22 01:30:58.250][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:58.252][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:58.254][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:58.256][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-07-22 01:30:58.260][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-07-22 01:30:58.262][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-07-22 01:30:58.265][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-07-22 01:30:58.268][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-07-22 01:30:58.271][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-07-22 01:30:58.273][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:58.277][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:58.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:58.281][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-07-22 01:30:58.284][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-07-22 01:30:58.286][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:58.289][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:58.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:58.297][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-07-22 01:30:58.300][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-07-22 01:30:58.303][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:58.307][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:58.309][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:58.312][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-07-22 01:30:58.314][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-07-22 01:30:58.316][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:58.318][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:58.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:58.322][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-07-22 01:30:58.325][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-07-22 01:30:58.326][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:58.331][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:58.333][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:58.336][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-07-22 01:30:58.338][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-07-22 01:30:58.339][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:58.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:58.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:58.343][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-07-22 01:30:58.344][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-07-22 01:30:58.395][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-07-22 01:30:58.399][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:58.401][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:58.403][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:58.406][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-07-22 01:30:58.408][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-07-22 01:30:58.409][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-07-22 01:30:58.412][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:58.414][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:58.416][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:58.419][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-07-22 01:30:58.427][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-22 01:30:58.429][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-07-22 01:30:58.432][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-22 01:30:58.434][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-22 01:30:58.436][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-22 01:30:58.438][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-22 01:30:58.441][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-22 01:30:58.445][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-22 01:30:58.447][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-22 01:30:58.449][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-22 01:30:58.450][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-22 01:30:58.452][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-07-22 01:30:58.453][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-22 01:30:58.454][self$setPropertyValue]
biodb.DEBUG[2024-07-22 01:30:58.456][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-22 01:30:58.459][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-22 01:30:58.459][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-22 01:30:58.459][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-22 01:30:58.459][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-22 01:30:58.459][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-22 01:30:58.461][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-22 01:30:58.464][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-22 01:30:58.466][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-22 01:30:58.468][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-22 01:30:58.470][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-22 01:30:58.472][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-22 01:30:58.474][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-22 01:30:58.476][self$setPropertyValue]
biodb.DEBUG[2024-07-22 01:30:58.478][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-22 01:30:58.480][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-22 01:30:58.483][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-22 01:30:58.485][self$setPropertyValue]
biodb.DEBUG[2024-07-22 01:30:58.487][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-07-22 01:30:58.490][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-22 01:30:58.492][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-07-22 01:30:58.493][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-22 01:30:58.495][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-22 01:30:58.497][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-22 01:30:58.500][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-22 01:30:58.501][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-22 01:30:58.503][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-22 01:30:58.505][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-22 01:30:58.507][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-22 01:30:58.508][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-22 01:30:58.510][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-07-22 01:30:58.513][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-22 01:30:58.515][self$setPropertyValue]
biodb.DEBUG[2024-07-22 01:30:58.517][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-22 01:30:58.519][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-22 01:30:58.519][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-22 01:30:58.519][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-22 01:30:58.519][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-22 01:30:58.519][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-22 01:30:58.521][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-22 01:30:58.522][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-22 01:30:58.524][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-22 01:30:58.525][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-22 01:30:58.526][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-22 01:30:58.528][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-22 01:30:58.530][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-22 01:30:58.533][self$setPropertyValue]
biodb.DEBUG[2024-07-22 01:30:58.535][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-22 01:30:58.537][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-22 01:30:58.539][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-22 01:30:58.540][self$setPropertyValue]
biodb.DEBUG[2024-07-22 01:30:58.542][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-07-22 01:30:58.546][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-22 01:30:58.548][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-07-22 01:30:58.551][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-22 01:30:58.554][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-22 01:30:58.556][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-22 01:30:58.558][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-22 01:30:58.561][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-22 01:30:58.563][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-22 01:30:58.566][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-22 01:30:58.568][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-22 01:30:58.570][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-22 01:30:58.572][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-07-22 01:30:58.574][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-22 01:30:58.576][self$setPropertyValue]
biodb.DEBUG[2024-07-22 01:30:58.578][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-22 01:30:58.581][self$setPropertyValue]
biodb.DEBUG[2024-07-22 01:30:58.584][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-22 01:30:58.587][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-22 01:30:58.589][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-22 01:30:58.591][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-22 01:30:58.597][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-22 01:30:58.599][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-22 01:30:58.601][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-22 01:30:58.603][self$setPropertyValue]
biodb.DEBUG[2024-07-22 01:30:58.605][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-22 01:30:58.607][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-22 01:30:58.618][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-22 01:30:58.635][self$setPropertyValue]
biodb.DEBUG[2024-07-22 01:30:58.637][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-07-22 01:30:58.641][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-22 01:30:58.644][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-07-22 01:30:58.647][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-22 01:30:58.651][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-22 01:30:58.653][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-22 01:30:58.656][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-22 01:30:58.658][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-22 01:30:58.661][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-22 01:30:58.663][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-22 01:30:58.666][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-22 01:30:58.669][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-22 01:30:58.672][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-07-22 01:30:58.674][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-22 01:30:58.677][self$setPropertyValue]
biodb.DEBUG[2024-07-22 01:30:58.679][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-22 01:30:58.683][self$setPropertyValue]
biodb.DEBUG[2024-07-22 01:30:58.685][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-22 01:30:58.687][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-22 01:30:58.688][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-22 01:30:58.690][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-22 01:30:58.691][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-22 01:30:58.693][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-22 01:30:58.696][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-22 01:30:58.698][self$setPropertyValue]
biodb.DEBUG[2024-07-22 01:30:58.700][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-22 01:30:58.702][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-22 01:30:58.704][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-22 01:30:58.707][self$setPropertyValue]
biodb.DEBUG[2024-07-22 01:30:58.709][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-22 01:30:58.711][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:58.713][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:58.715][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:58.716][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:58.718][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:58.720][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:58.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:58.722][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:58.723][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:58.724][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:58.726][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:58.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:58.737][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:58.739][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:58.744][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:58.747][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:58.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:58.749][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:58.750][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:58.751][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:58.753][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:58.754][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:58.755][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:58.757][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:58.759][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:58.762][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:58.765][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:58.767][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:58.769][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:58.770][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:58.772][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:58.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:58.777][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:58.779][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:58.782][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:58.784][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:58.787][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:58.789][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:58.795][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:58.797][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:58.799][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:58.801][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:58.804][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:58.808][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:58.811][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:58.813][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:58.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:58.828][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:58.831][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:58.833][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:58.835][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:58.837][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:58.839][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:58.841][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:58.844][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:58.846][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:58.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:58.861][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:58.863][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:58.865][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:58.867][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:58.869][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:58.877][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:58.880][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:58.882][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:58.884][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:58.891][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:58.894][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:58.896][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:58.898][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:58.901][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:58.903][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:58.905][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:58.908][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:58.910][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:58.914][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:58.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:58.918][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:58.920][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:58.923][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:58.925][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:58.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:58.930][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:58.932][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:58.936][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:58.938][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:58.940][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:58.943][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-07-22 01:30:58.961][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-07-22 01:30:58.965][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-07-22 01:30:58.968][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-07-22 01:30:58.972][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-07-22 01:30:58.975][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-07-22 01:30:58.979][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-07-22 01:30:58.982][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-07-22 01:30:58.986][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-07-22 01:30:58.989][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-07-22 01:30:58.993][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-22 01:30:58.996][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-07-22 01:30:58.999][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-07-22 01:30:59.003][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-07-22 01:30:59.006][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-07-22 01:30:59.012][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-07-22 01:30:59.016][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-07-22 01:30:59.019][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-07-22 01:30:59.023][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-07-22 01:30:59.027][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-07-22 01:30:59.032][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-07-22 01:30:59.039][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-07-22 01:30:59.042][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-07-22 01:30:59.048][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-07-22 01:30:59.051][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-07-22 01:30:59.055][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-07-22 01:30:59.062][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-07-22 01:30:59.067][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-07-22 01:30:59.071][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-07-22 01:30:59.077][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-07-22 01:30:59.081][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-07-22 01:30:59.086][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-07-22 01:30:59.090][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-07-22 01:30:59.093][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-07-22 01:30:59.099][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-07-22 01:30:59.102][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-07-22 01:30:59.106][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-07-22 01:30:59.112][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-07-22 01:30:59.115][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-07-22 01:30:59.119][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-07-22 01:30:59.126][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-07-22 01:30:59.130][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-07-22 01:30:59.134][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-07-22 01:30:59.139][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-07-22 01:30:59.143][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-07-22 01:30:59.149][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-07-22 01:30:59.153][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-07-22 01:30:59.157][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-07-22 01:30:59.164][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-07-22 01:30:59.167][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-07-22 01:30:59.172][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-07-22 01:30:59.176][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-07-22 01:30:59.179][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-07-22 01:30:59.185][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-07-22 01:30:59.190][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-07-22 01:30:59.193][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-07-22 01:30:59.197][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-07-22 01:30:59.202][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-07-22 01:30:59.207][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-07-22 01:30:59.211][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-07-22 01:30:59.216][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-07-22 01:30:59.220][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-07-22 01:30:59.225][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-07-22 01:30:59.229][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-07-22 01:30:59.232][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-07-22 01:30:59.238][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-07-22 01:30:59.243][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-07-22 01:30:59.247][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-07-22 01:30:59.251][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-07-22 01:30:59.256][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-07-22 01:30:59.261][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-07-22 01:30:59.265][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-07-22 01:30:59.269][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-07-22 01:30:59.274][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-07-22 01:30:59.279][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-07-22 01:30:59.282][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-07-22 01:30:59.290][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-07-22 01:30:59.294][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-07-22 01:30:59.297][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-07-22 01:30:59.302][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-07-22 01:30:59.305][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-07-22 01:30:59.316][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-07-22 01:30:59.320][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-07-22 01:30:59.324][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-07-22 01:30:59.337][initialize] This is biodb version 1.12.0.
biodb.DEBUG[2024-07-22 01:30:59.340][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-22 01:30:59.342][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:59.344][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:59.349][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:59.351][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:59.354][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:59.356][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:59.359][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:59.362][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:59.364][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:59.366][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:59.368][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:59.372][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:59.374][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:59.377][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:59.379][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:59.381][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:59.384][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:59.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:59.388][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:59.390][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:59.394][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:59.396][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:59.399][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:59.402][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:59.404][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:59.407][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:59.410][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:59.412][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:59.414][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:59.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:59.421][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:59.423][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:59.425][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:59.429][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:59.432][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:59.434][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:59.436][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:59.438][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:59.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:59.444][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:59.446][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:59.448][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:59.453][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:59.455][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:59.458][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:59.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:59.465][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:59.468][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:59.470][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:59.473][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:59.476][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:59.479][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:59.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:59.486][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:59.492][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:59.494][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:59.497][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:59.499][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:59.501][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:59.504][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:59.506][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:59.508][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:59.510][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:59.515][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:59.520][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:59.522][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:59.524][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:59.527][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:59.531][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:59.533][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:59.535][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:59.537][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:59.539][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:59.542][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:59.544][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:59.547][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:59.549][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:59.552][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:59.556][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:59.559][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:59.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:59.563][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:59.566][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:59.569][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:59.571][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:59.573][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:59.575][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:59.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:59.582][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:59.584][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:59.587][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:59.590][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:59.594][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:59.596][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:59.598][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:59.600][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:59.603][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:59.614][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:59.616][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:59.618][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:59.621][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:59.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:59.629][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:59.632][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:59.635][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:59.640][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:59.642][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:59.645][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:59.648][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:59.651][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:59.654][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:59.656][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:59.658][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:59.660][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:59.663][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:59.665][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:59.666][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:30:59.668][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:30:59.671][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:30:59.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:30:59.677][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:30:59.681][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:30:59.683][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:30:59.693][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodbChebi/definitions.yml".
biodb.DEBUG[2024-07-22 01:30:59.698][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2024-07-22 01:30:59.704][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-22 01:30:59.707][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-07-22 01:30:59.710][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-22 01:30:59.712][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-22 01:30:59.717][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-22 01:30:59.719][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-22 01:30:59.721][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-07-22 01:30:59.724][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2024-07-22 01:30:59.729][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-07-22 01:30:59.732][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-22 01:30:59.735][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-22 01:30:59.737][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2024-07-22 01:30:59.742][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-22 01:30:59.745][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-07-22 01:30:59.745][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2024-07-22 01:30:59.745][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-07-22 01:30:59.745][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-07-22 01:30:59.745][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-07-22 01:30:59.745][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2024-07-22 01:30:59.745][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-07-22 01:30:59.745][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-07-22 01:30:59.745][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2024-07-22 01:30:59.745][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2024-07-22 01:30:59.745][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-07-22 01:30:59.749][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-07-22 01:30:59.751][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-22 01:30:59.751][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-22 01:30:59.751][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-22 01:30:59.753][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-07-22 01:30:59.756][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-22 01:30:59.758][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-22 01:30:59.760][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-22 01:30:59.763][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-22 01:30:59.765][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-22 01:30:59.767][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-22 01:30:59.770][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-07-22 01:30:59.770][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2024-07-22 01:30:59.773][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-22 01:30:59.775][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-22 01:30:59.777][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-07-22 01:30:59.781][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2024-07-22 01:30:59.781][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2024-07-22 01:30:59.785][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-07-22 01:30:59.791][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-22 01:30:59.796][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2024-07-22 01:30:59.799][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-07-22 01:30:59.803][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-07-22 01:30:59.809][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-07-22 01:30:59.819][super$initialize] Initialize connector chebi.
biodb.DEBUG[2024-07-22 01:30:59.822][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2024-07-22 01:30:59.825][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2024-07-22 01:30:59.832][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2024-07-22 01:30:59.835][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-22 01:30:59.838][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-22 01:30:59.842][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2024-07-22 01:30:59.846][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2024-07-22 01:30:59.850][biodb::testThat]
biodb.INFO [2024-07-22 01:30:59.853][biodb::testThat] Running test function test.chebi.wsGetLiteEntity (" Web service getLiteEntity works fine. ").
biodb.INFO [2024-07-22 01:30:59.857][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-22 01:30:59.859][biodb::testThat]
biodb.DEBUG[2024-07-22 01:30:59.866][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2024-07-22 01:30:59.875][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-22 01:30:59.879][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2024-07-22 01:30:59.882][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-22 01:30:59.885][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2024-07-22 01:30:59.893][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI ID&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-07-22 01:30:59.903][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-07-22 01:30:59.906][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-07-22 01:30:59.910][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI%20ID&maximumResults=10&starsCategory=ALL".
biodb.TRACE[2024-07-22 01:31:00.330][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI%20ID&maximumResults=10&starsCategory=ALL).
biodb.DEBUG[2024-07-22 01:31:00.734][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-07-22 01:31:00.738][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/04c26672f8368e71348af4b34238160e.content"
biodb.TRACE[2024-07-22 01:31:00.747][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/04c26672f8368e71348af4b34238160e.request"
biodb.INFO [2024-07-22 01:31:00.766][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-07-22 01:31:00.769][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2024-07-22 01:31:00.772][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2024-07-22 01:31:00.774][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-07-22 01:31:00.776][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:31:00.778][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:31:00.780][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:31:00.782][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:31:00.784][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:31:00.786][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-07-22 01:31:00.794][biodb::testContext]
biodb.INFO [2024-07-22 01:31:00.797][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-22 01:31:00.799][biodb::testContext] Test context - Non regression tests
biodb.INFO [2024-07-22 01:31:00.802][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-22 01:31:00.804][biodb::testContext]
biodb.INFO [2024-07-22 01:31:00.809][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.12.0.
biodb.DEBUG[2024-07-22 01:31:00.813][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-07-22 01:31:00.821][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-22 01:31:00.823][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-07-22 01:31:00.826][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-07-22 01:31:00.828][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:31:00.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:31:00.832][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:31:00.834][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-07-22 01:31:00.837][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-07-22 01:31:00.839][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:31:00.842][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:31:00.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:31:00.847][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-07-22 01:31:00.850][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-07-22 01:31:00.852][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:31:00.854][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:31:00.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:31:00.859][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-07-22 01:31:00.861][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-07-22 01:31:00.863][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-07-22 01:31:00.865][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:31:00.879][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:31:00.881][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:31:00.883][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-07-22 01:31:00.886][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-07-22 01:31:00.888][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-07-22 01:31:00.890][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:31:00.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:31:00.894][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:31:00.896][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-07-22 01:31:00.898][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-07-22 01:31:00.900][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:31:00.902][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:31:00.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:31:00.906][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-07-22 01:31:00.910][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-07-22 01:31:00.913][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-07-22 01:31:00.915][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:31:00.917][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:31:00.918][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:31:00.921][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-07-22 01:31:00.923][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-07-22 01:31:00.925][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:31:00.927][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:31:00.929][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:31:00.931][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-07-22 01:31:00.933][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-07-22 01:31:00.936][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-07-22 01:31:00.938][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:31:00.939][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:31:00.940][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:31:00.941][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-07-22 01:31:00.943][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-07-22 01:31:00.949][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-07-22 01:31:00.952][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-07-22 01:31:00.954][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-07-22 01:31:00.956][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-07-22 01:31:00.958][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:31:00.960][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:31:00.961][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:31:00.964][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-07-22 01:31:00.966][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-07-22 01:31:00.968][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:31:00.969][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:31:00.972][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:31:00.973][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-07-22 01:31:00.975][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-07-22 01:31:00.976][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:31:00.977][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:31:00.978][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:31:00.980][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-07-22 01:31:00.982][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-07-22 01:31:00.983][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:31:00.985][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:31:00.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:31:00.989][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-07-22 01:31:00.991][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-07-22 01:31:00.993][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:31:00.995][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:31:00.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:31:01.000][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-07-22 01:31:01.003][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-07-22 01:31:01.004][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:31:01.006][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:31:01.008][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:31:01.010][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-07-22 01:31:01.013][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-07-22 01:31:01.056][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-07-22 01:31:01.058][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:31:01.060][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:31:01.062][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:31:01.064][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-07-22 01:31:01.068][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-07-22 01:31:01.070][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-07-22 01:31:01.072][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:31:01.073][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:31:01.075][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:31:01.078][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-07-22 01:31:01.082][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-22 01:31:01.084][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-07-22 01:31:01.086][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-22 01:31:01.089][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-22 01:31:01.091][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-22 01:31:01.094][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-22 01:31:01.098][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-22 01:31:01.101][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-22 01:31:01.104][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-22 01:31:01.106][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-22 01:31:01.115][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-22 01:31:01.118][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-07-22 01:31:01.120][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-22 01:31:01.123][self$setPropertyValue]
biodb.DEBUG[2024-07-22 01:31:01.131][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-22 01:31:01.136][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-22 01:31:01.136][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-22 01:31:01.136][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-22 01:31:01.136][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-22 01:31:01.136][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-22 01:31:01.138][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-22 01:31:01.141][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-22 01:31:01.143][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-22 01:31:01.145][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-22 01:31:01.148][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-22 01:31:01.150][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-22 01:31:01.152][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-22 01:31:01.154][self$setPropertyValue]
biodb.DEBUG[2024-07-22 01:31:01.157][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-22 01:31:01.159][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-22 01:31:01.161][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-22 01:31:01.175][self$setPropertyValue]
biodb.DEBUG[2024-07-22 01:31:01.178][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-07-22 01:31:01.183][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-22 01:31:01.186][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-07-22 01:31:01.188][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-22 01:31:01.191][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-22 01:31:01.195][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-22 01:31:01.201][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-22 01:31:01.203][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-22 01:31:01.206][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-22 01:31:01.209][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-22 01:31:01.211][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-22 01:31:01.213][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-22 01:31:01.216][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-07-22 01:31:01.228][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-22 01:31:01.231][self$setPropertyValue]
biodb.DEBUG[2024-07-22 01:31:01.235][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-22 01:31:01.238][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-22 01:31:01.238][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-22 01:31:01.238][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-22 01:31:01.238][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-22 01:31:01.238][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-22 01:31:01.245][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-22 01:31:01.247][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-22 01:31:01.249][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-22 01:31:01.251][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-22 01:31:01.254][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-22 01:31:01.258][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-22 01:31:01.261][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-22 01:31:01.263][self$setPropertyValue]
biodb.DEBUG[2024-07-22 01:31:01.265][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-22 01:31:01.269][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-22 01:31:01.272][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-22 01:31:01.274][self$setPropertyValue]
biodb.DEBUG[2024-07-22 01:31:01.277][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-07-22 01:31:01.283][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-22 01:31:01.286][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-07-22 01:31:01.288][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-22 01:31:01.295][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-22 01:31:01.298][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-22 01:31:01.300][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-22 01:31:01.305][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-22 01:31:01.308][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-22 01:31:01.313][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-22 01:31:01.315][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-22 01:31:01.318][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-22 01:31:01.320][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-07-22 01:31:01.326][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-22 01:31:01.329][self$setPropertyValue]
biodb.DEBUG[2024-07-22 01:31:01.331][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-22 01:31:01.333][self$setPropertyValue]
biodb.DEBUG[2024-07-22 01:31:01.338][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-22 01:31:01.340][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-22 01:31:01.342][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-22 01:31:01.344][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-22 01:31:01.348][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-22 01:31:01.350][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-22 01:31:01.353][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-22 01:31:01.355][self$setPropertyValue]
biodb.DEBUG[2024-07-22 01:31:01.357][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-22 01:31:01.368][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-22 01:31:01.370][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-22 01:31:01.373][self$setPropertyValue]
biodb.DEBUG[2024-07-22 01:31:01.375][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-07-22 01:31:01.384][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-22 01:31:01.386][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-07-22 01:31:01.389][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-22 01:31:01.394][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-22 01:31:01.397][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-22 01:31:01.400][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-22 01:31:01.422][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-22 01:31:01.424][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-22 01:31:01.427][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-22 01:31:01.430][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-22 01:31:01.433][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-22 01:31:01.435][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-07-22 01:31:01.437][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-22 01:31:01.440][self$setPropertyValue]
biodb.DEBUG[2024-07-22 01:31:01.443][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-22 01:31:01.445][self$setPropertyValue]
biodb.DEBUG[2024-07-22 01:31:01.447][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-22 01:31:01.452][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-22 01:31:01.455][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-22 01:31:01.458][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-22 01:31:01.461][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-22 01:31:01.464][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-22 01:31:01.466][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-22 01:31:01.469][self$setPropertyValue]
biodb.DEBUG[2024-07-22 01:31:01.471][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-22 01:31:01.473][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-22 01:31:01.480][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-22 01:31:01.483][self$setPropertyValue]
biodb.DEBUG[2024-07-22 01:31:01.487][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-22 01:31:01.490][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:31:01.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:31:01.496][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:31:01.498][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:31:01.500][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:31:01.504][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:31:01.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:31:01.509][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:31:01.512][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:31:01.514][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:31:01.516][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:31:01.519][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:31:01.521][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:31:01.523][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:31:01.527][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:31:01.531][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:31:01.534][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:31:01.537][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:31:01.540][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:31:01.542][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:31:01.544][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:31:01.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:31:01.548][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:31:01.551][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:31:01.553][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:31:01.555][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:31:01.557][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:31:01.560][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:31:01.562][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:31:01.565][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:31:01.567][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:31:01.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:31:01.572][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:31:01.574][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:31:01.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:31:01.578][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:31:01.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:31:01.584][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:31:01.586][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:31:01.588][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:31:01.590][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:31:01.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:31:01.598][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:31:01.600][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:31:01.602][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:31:01.604][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:31:01.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:31:01.610][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:31:01.612][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:31:01.614][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:31:01.618][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:31:01.620][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:31:01.623][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:31:01.625][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:31:01.627][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:31:01.629][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:31:01.631][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:31:01.635][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:31:01.637][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:31:01.639][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:31:01.641][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:31:01.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:31:01.645][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:31:01.647][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:31:01.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:31:01.650][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:31:01.652][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:31:01.654][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:31:01.656][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:31:01.658][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:31:01.660][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:31:01.664][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:31:01.666][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:31:01.668][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:31:01.670][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:31:01.673][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:31:01.677][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:31:01.679][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:31:01.681][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:31:01.683][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:31:01.690][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:31:01.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:31:01.694][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:31:01.697][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:31:01.700][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:31:01.708][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:31:01.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:31:01.713][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-07-22 01:31:01.716][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-07-22 01:31:01.721][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-07-22 01:31:01.724][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-07-22 01:31:01.727][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-07-22 01:31:01.731][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-07-22 01:31:01.734][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-07-22 01:31:01.738][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-07-22 01:31:01.742][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-07-22 01:31:01.745][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-07-22 01:31:01.749][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-22 01:31:01.755][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-07-22 01:31:01.759][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-07-22 01:31:01.765][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-07-22 01:31:01.768][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-07-22 01:31:01.772][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-07-22 01:31:01.776][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-07-22 01:31:01.780][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-07-22 01:31:01.783][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-07-22 01:31:01.787][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-07-22 01:31:01.791][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-07-22 01:31:01.795][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-07-22 01:31:01.800][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-07-22 01:31:01.804][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-07-22 01:31:01.808][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-07-22 01:31:01.811][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-07-22 01:31:01.815][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-07-22 01:31:01.818][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-07-22 01:31:01.821][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-07-22 01:31:01.824][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-07-22 01:31:01.828][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-07-22 01:31:01.831][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-07-22 01:31:01.834][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-07-22 01:31:01.838][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-07-22 01:31:01.841][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-07-22 01:31:01.845][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-07-22 01:31:01.850][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-07-22 01:31:01.853][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-07-22 01:31:01.857][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-07-22 01:31:01.862][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-07-22 01:31:01.865][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-07-22 01:31:01.869][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-07-22 01:31:01.873][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-07-22 01:31:01.876][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-07-22 01:31:01.880][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-07-22 01:31:01.885][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-07-22 01:31:01.890][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-07-22 01:31:01.894][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-07-22 01:31:01.899][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-07-22 01:31:01.903][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-07-22 01:31:01.906][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-07-22 01:31:01.910][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-07-22 01:31:01.914][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-07-22 01:31:01.920][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-07-22 01:31:01.925][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-07-22 01:31:01.928][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-07-22 01:31:01.938][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-07-22 01:31:01.942][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-07-22 01:31:01.946][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-07-22 01:31:01.953][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-07-22 01:31:01.956][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-07-22 01:31:01.960][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-07-22 01:31:01.965][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-07-22 01:31:01.970][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-07-22 01:31:01.975][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-07-22 01:31:01.979][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-07-22 01:31:01.983][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-07-22 01:31:01.988][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-07-22 01:31:01.992][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-07-22 01:31:01.995][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-07-22 01:31:02.000][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-07-22 01:31:02.004][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-07-22 01:31:02.008][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-07-22 01:31:02.013][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-07-22 01:31:02.017][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-07-22 01:31:02.025][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-07-22 01:31:02.029][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-07-22 01:31:02.032][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-07-22 01:31:02.036][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-07-22 01:31:02.040][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-07-22 01:31:02.043][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-07-22 01:31:02.049][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-07-22 01:31:02.052][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-07-22 01:31:02.056][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-07-22 01:31:02.066][initialize] This is biodb version 1.12.0.
biodb.DEBUG[2024-07-22 01:31:02.068][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-22 01:31:02.071][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:31:02.073][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:31:02.077][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:31:02.079][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:31:02.081][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:31:02.084][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:31:02.086][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:31:02.091][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:31:02.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:31:02.097][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:31:02.100][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:31:02.105][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:31:02.109][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:31:02.111][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:31:02.113][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:31:02.117][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:31:02.119][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:31:02.122][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:31:02.124][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:31:02.126][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:31:02.129][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:31:02.131][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:31:02.133][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:31:02.135][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:31:02.137][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:31:02.141][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:31:02.144][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:31:02.146][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:31:02.148][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:31:02.152][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:31:02.154][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:31:02.157][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:31:02.159][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:31:02.163][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:31:02.167][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:31:02.171][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:31:02.175][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:31:02.178][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:31:02.180][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:31:02.182][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:31:02.185][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:31:02.193][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:31:02.195][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:31:02.199][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:31:02.202][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:31:02.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:31:02.212][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:31:02.214][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:31:02.216][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:31:02.218][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:31:02.222][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:31:02.224][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:31:02.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:31:02.228][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:31:02.230][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:31:02.232][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:31:02.235][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:31:02.237][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:31:02.239][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:31:02.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:31:02.244][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:31:02.245][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:31:02.248][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:31:02.250][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:31:02.254][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:31:02.256][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:31:02.258][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:31:02.260][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:31:02.262][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:31:02.267][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:31:02.269][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:31:02.273][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:31:02.275][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:31:02.278][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:31:02.280][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:31:02.283][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:31:02.285][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:31:02.287][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:31:02.291][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:31:02.293][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:31:02.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:31:02.297][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:31:02.301][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:31:02.303][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:31:02.305][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:31:02.307][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:31:02.309][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:31:02.312][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:31:02.314][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:31:02.316][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:31:02.318][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:31:02.320][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:31:02.326][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:31:02.328][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:31:02.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:31:02.333][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:31:02.339][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:31:02.341][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:31:02.344][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:31:02.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:31:02.348][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:31:02.354][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:31:02.356][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:31:02.358][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:31:02.371][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:31:02.373][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:31:02.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:31:02.379][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:31:02.381][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:31:02.384][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:31:02.386][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:31:02.387][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:31:02.388][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:31:02.390][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:31:02.392][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:31:02.394][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:31:02.396][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-22 01:31:02.399][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:31:02.401][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:31:02.403][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:31:02.407][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:31:02.409][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:31:02.411][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:31:02.415][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodbChebi/definitions.yml".
biodb.DEBUG[2024-07-22 01:31:02.418][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2024-07-22 01:31:02.423][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-22 01:31:02.425][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-07-22 01:31:02.428][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-22 01:31:02.430][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-22 01:31:02.432][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-22 01:31:02.434][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-22 01:31:02.437][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-07-22 01:31:02.439][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2024-07-22 01:31:02.442][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-07-22 01:31:02.445][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-22 01:31:02.447][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-22 01:31:02.449][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2024-07-22 01:31:02.452][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-22 01:31:02.456][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-07-22 01:31:02.456][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2024-07-22 01:31:02.456][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-07-22 01:31:02.456][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-07-22 01:31:02.456][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-07-22 01:31:02.456][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2024-07-22 01:31:02.456][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-07-22 01:31:02.456][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-07-22 01:31:02.456][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2024-07-22 01:31:02.456][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2024-07-22 01:31:02.456][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-07-22 01:31:02.459][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-07-22 01:31:02.462][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-22 01:31:02.462][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-22 01:31:02.462][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-22 01:31:02.467][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-07-22 01:31:02.470][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-22 01:31:02.472][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-22 01:31:02.474][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-22 01:31:02.476][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-22 01:31:02.478][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-22 01:31:02.480][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-22 01:31:02.482][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-07-22 01:31:02.482][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2024-07-22 01:31:02.484][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-22 01:31:02.486][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-22 01:31:02.489][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-07-22 01:31:02.492][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2024-07-22 01:31:02.492][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2024-07-22 01:31:02.495][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-07-22 01:31:02.499][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-22 01:31:02.503][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2024-07-22 01:31:02.506][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-07-22 01:31:02.511][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-07-22 01:31:02.514][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-07-22 01:31:02.524][super$initialize] Initialize connector chebi.
biodb.DEBUG[2024-07-22 01:31:02.526][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2024-07-22 01:31:02.531][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2024-07-22 01:31:02.534][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2024-07-22 01:31:02.537][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-22 01:31:02.539][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-22 01:31:02.543][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2024-07-22 01:31:02.546][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2024-07-22 01:31:02.548][biodb::testThat]
biodb.INFO [2024-07-22 01:31:02.551][biodb::testThat] Running test function test.chebi.encoding.issue.in.xml (" ChEBI encoding issue in XML is handled. ").
biodb.INFO [2024-07-22 01:31:02.553][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-22 01:31:02.555][biodb::testThat]
biodb.DEBUG[2024-07-22 01:31:02.561][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2024-07-22 01:31:02.569][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-22 01:31:02.572][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2024-07-22 01:31:02.576][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-22 01:31:02.579][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2024-07-22 01:31:02.587][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI ID&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-07-22 01:31:02.595][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-22 01:31:02.598][cch$loadFileContent] Trying to load 1 files from cache: [1]: "04c26672f8368e71348af4b34238160e".
biodb.TRACE[2024-07-22 01:31:02.600][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-22 01:31:02.602][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/04c26672f8368e71348af4b34238160e.content".
biodb.DEBUG[2024-07-22 01:31:02.612][private$loadEntries] Creating entries from ids [1]: "2571".
biodb.DEBUG[2024-07-22 01:31:02.616][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-22 01:31:02.620][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2571".
biodb.TRACE[2024-07-22 01:31:02.622][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-07-22 01:31:02.624][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-07-22 01:31:02.626][conn$getEntryContent] 0 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-22 01:31:02.628][conn$getEntryContent] 1 entry content(s) need to be fetched from ChEBI database "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-07-22 01:31:02.630][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-07-22 01:31:02.632][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-07-22 01:31:02.638][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:31:02.641][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:31:02.643][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:31:02.654][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:31:02.656][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:31:02.658][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:31:02.661][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-22 01:31:02.663][scheduler$sendRequest] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2571".
biodb.DEBUG[2024-07-22 01:31:02.670][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-07-22 01:31:02.673][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-07-22 01:31:02.675][private$doSendRequestOnce] Sent URL is "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2571".
biodb.TRACE[2024-07-22 01:31:03.100][getRCurlRequestResult] Using RCurl package for sending request (https://www.ebi.ac.uk/webservices/chebi/2.0/test/getCompleteEntity?chebiId=2571).
biodb.DEBUG[2024-07-22 01:31:03.925][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-07-22 01:31:03.929][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/52df2611aa7f9f4c531cce8ac62e2fa0.content"
biodb.TRACE[2024-07-22 01:31:03.940][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/52df2611aa7f9f4c531cce8ac62e2fa0.request"
biodb.TRACE[2024-07-22 01:31:03.946][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2571.xml"
biodb.DEBUG[2024-07-22 01:31:03.953][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-07-22 01:31:03.956][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-22 01:31:03.959][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-22 01:31:03.963][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-22 01:31:03.965][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:31:03.967][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:31:03.980][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:31:03.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:31:03.985][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:31:03.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-22 01:31:03.996][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:31:03.999][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:31:04.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:31:04.004][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:31:04.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:31:04.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:31:04.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:31:04.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:31:04.016][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-22 01:31:04.017][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-22 01:31:04.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:31:04.020][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:31:04.022][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-22 01:31:04.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-22 01:31:04.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:31:04.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:31:04.031][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-22 01:31:04.034][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-22 01:31:04.035][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:31:04.037][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:31:04.040][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-22 01:31:04.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-22 01:31:04.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:31:04.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:31:04.054][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-22 01:31:04.057][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-22 01:31:04.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:31:04.061][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:31:04.064][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-22 01:31:04.069][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-22 01:31:04.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:31:04.073][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:31:04.075][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:31:04.082][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:31:04.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:31:04.087][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:31:04.090][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:31:04.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-22 01:31:04.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:31:04.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:31:04.101][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-22 01:31:04.103][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:31:04.105][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:31:04.107][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:31:04.111][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-22 01:31:04.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-22 01:31:04.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:31:04.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:31:04.123][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:31:04.126][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:31:04.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:31:04.131][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:31:04.135][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:31:04.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-22 01:31:04.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:31:04.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:31:04.146][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:31:04.149][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:31:04.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:31:04.156][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:31:04.160][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-22 01:31:04.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-22 01:31:04.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:31:04.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:31:04.175][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-22 01:31:04.177][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-22 01:31:04.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:31:04.183][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:31:04.186][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-22 01:31:04.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-22 01:31:04.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:31:04.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:31:04.194][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-22 01:31:04.196][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-22 01:31:04.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:31:04.200][ef$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:31:04.204][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-22 01:31:04.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-22 01:31:04.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:31:04.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:31:04.215][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:31:04.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:31:04.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:31:04.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:31:04.226][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:31:04.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:31:04.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:31:04.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:31:04.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:31:04.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:31:04.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:31:04.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:31:04.247][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-22 01:31:04.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-22 01:31:04.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:31:04.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:31:04.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:31:04.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:31:04.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:31:04.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:31:04.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:31:04.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:31:04.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:31:04.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:31:04.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:31:04.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:31:04.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:31:04.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:31:04.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:31:04.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:31:04.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:31:04.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:31:04.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:31:04.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:31:04.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:31:04.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-22 01:31:04.312][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-22 01:31:04.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-22 01:31:04.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-22 01:31:04.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-22 01:31:04.323][self$createEntryFromContent] Accession numbers: 2571.
biodb.INFO [2024-07-22 01:31:04.337][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-07-22 01:31:04.340][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2024-07-22 01:31:04.344][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2024-07-22 01:31:04.346][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-07-22 01:31:04.348][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-22 01:31:04.350][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-22 01:31:04.353][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-22 01:31:04.356][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-22 01:31:04.358][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-07-22 01:31:04.360][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 361 ]
>
> proc.time()
user system elapsed
34.034 1.951 72.935
biodbChebi.Rcheck/biodbChebi-Ex.timings
| name | user | system | elapsed | |
| ChebiConn | 4.460 | 2.493 | 23.623 | |
| ChebiEntry | 0.720 | 0.028 | 1.236 | |