Pierrick Roger
| Snapshot Date: 2024-07-21 14:00 -0400 (Sun, 21 Jul 2024) |
| git_url: https://git.bioconductor.org/packages/biodbChebi |
| git_branch: RELEASE_3_19 |
| git_last_commit: fad38a4 |
| git_last_commit_date: 2024-04-30 11:37:31 -0400 (Tue, 30 Apr 2024) |
| Back to Multiple platform build/check report for BioC 3.19: simplified long |
|
This page was generated on 2024-07-24 09:03 -0400 (Wed, 24 Jul 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4747 |
| palomino7 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4489 |
| merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4518 |
| kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4467 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 200/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| biodbChebi 1.10.0 (landing page) Pierrick Roger
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | | ||||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | | ||||||||
| merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | | ||||||||
| kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | | ||||||||
|
To the developers/maintainers of the biodbChebi package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbChebi.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: biodbChebi |
| Version: 1.10.0 |
| Command: /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:biodbChebi.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings biodbChebi_1.10.0.tar.gz |
| StartedAt: 2024-07-21 22:08:19 -0400 (Sun, 21 Jul 2024) |
| EndedAt: 2024-07-21 22:09:29 -0400 (Sun, 21 Jul 2024) |
| EllapsedTime: 70.2 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: biodbChebi.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:biodbChebi.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings biodbChebi_1.10.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/home/biocbuild/bbs-3.19-bioc/meat/biodbChebi.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.4 LTS
* using session charset: UTF-8
* checking for file ‘biodbChebi/DESCRIPTION’ ... OK
* this is package ‘biodbChebi’ version ‘1.10.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbChebi’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: OK
biodbChebi.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD INSTALL biodbChebi ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.19-bioc/R/site-library’ * installing *source* package ‘biodbChebi’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (biodbChebi)
biodbChebi.Rcheck/tests/testthat.Rout
R version 4.4.1 (2024-06-14) -- "Race for Your Life"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbChebi)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbChebi")
biodb.INFO [2024-07-21 22:09:04.952][biodb::testContext]
biodb.INFO [2024-07-21 22:09:04.955][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-21 22:09:04.956][biodb::testContext] Test context - Generic tests
biodb.INFO [2024-07-21 22:09:04.957][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-21 22:09:04.958][biodb::testContext]
biodb.INFO [2024-07-21 22:09:04.966][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.12.0.
biodb.DEBUG[2024-07-21 22:09:04.968][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.19-bioc/R/site-library/biodb/definitions.yml".
biodb.DEBUG[2024-07-21 22:09:04.977][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-21 22:09:04.978][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-07-21 22:09:04.979][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-07-21 22:09:04.980][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:04.981][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:04.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:04.983][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-07-21 22:09:05.011][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-07-21 22:09:05.014][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:05.015][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:05.016][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:05.017][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-07-21 22:09:05.018][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-07-21 22:09:05.019][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:05.020][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:05.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:05.022][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-07-21 22:09:05.023][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-07-21 22:09:05.024][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-07-21 22:09:05.025][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:05.026][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:05.027][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:05.028][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-07-21 22:09:05.029][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-07-21 22:09:05.030][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-07-21 22:09:05.031][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:05.032][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:05.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:05.034][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-07-21 22:09:05.035][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-07-21 22:09:05.036][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:05.037][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:05.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:05.039][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-07-21 22:09:05.040][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-07-21 22:09:05.041][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-07-21 22:09:05.042][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:05.043][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:05.044][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:05.045][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-07-21 22:09:05.046][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-07-21 22:09:05.047][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:05.048][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:05.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:05.050][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-07-21 22:09:05.051][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-07-21 22:09:05.052][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-07-21 22:09:05.053][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:05.054][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:05.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:05.056][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-07-21 22:09:05.057][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-07-21 22:09:05.058][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-07-21 22:09:05.059][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-07-21 22:09:05.060][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-07-21 22:09:05.061][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-07-21 22:09:05.062][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:05.063][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:05.064][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:05.065][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-07-21 22:09:05.066][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-07-21 22:09:05.067][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:05.068][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:05.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:05.070][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-07-21 22:09:05.071][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-07-21 22:09:05.072][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:05.073][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:05.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:05.075][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-07-21 22:09:05.076][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-07-21 22:09:05.077][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:05.078][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:05.079][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:05.080][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-07-21 22:09:05.081][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-07-21 22:09:05.082][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:05.083][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:05.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:05.085][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-07-21 22:09:05.086][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-07-21 22:09:05.087][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:05.088][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:05.089][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:05.090][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-07-21 22:09:05.091][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-07-21 22:09:05.095][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-07-21 22:09:05.096][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:05.097][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:05.098][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:05.099][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-07-21 22:09:05.100][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-07-21 22:09:05.101][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-07-21 22:09:05.102][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:05.103][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:05.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:05.108][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-07-21 22:09:05.146][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-21 22:09:05.182][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-07-21 22:09:05.183][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:05.184][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-21 22:09:05.185][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:05.186][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-21 22:09:05.187][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-21 22:09:05.188][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-21 22:09:05.189][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-21 22:09:05.190][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-21 22:09:05.191][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:05.192][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-07-21 22:09:05.193][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-21 22:09:05.194][self$setPropertyValue]
biodb.DEBUG[2024-07-21 22:09:05.195][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:05.196][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-21 22:09:05.196][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-21 22:09:05.196][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-21 22:09:05.196][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-21 22:09:05.196][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-21 22:09:05.198][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-21 22:09:05.199][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 22:09:05.200][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 22:09:05.200][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-21 22:09:05.201][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 22:09:05.202][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 22:09:05.203][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-21 22:09:05.204][self$setPropertyValue]
biodb.DEBUG[2024-07-21 22:09:05.205][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-21 22:09:05.206][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-21 22:09:05.207][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-21 22:09:05.209][self$setPropertyValue]
biodb.DEBUG[2024-07-21 22:09:05.210][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-07-21 22:09:05.212][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-21 22:09:05.213][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-07-21 22:09:05.214][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:05.215][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-21 22:09:05.216][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:05.217][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-21 22:09:05.218][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-21 22:09:05.219][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-21 22:09:05.220][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-21 22:09:05.221][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-21 22:09:05.222][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:05.223][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-07-21 22:09:05.224][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-21 22:09:05.225][self$setPropertyValue]
biodb.DEBUG[2024-07-21 22:09:05.226][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:05.227][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-21 22:09:05.227][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-21 22:09:05.227][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-21 22:09:05.227][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-21 22:09:05.227][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-21 22:09:05.228][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-21 22:09:05.229][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 22:09:05.230][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 22:09:05.231][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-21 22:09:05.232][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 22:09:05.232][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 22:09:05.233][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-21 22:09:05.234][self$setPropertyValue]
biodb.DEBUG[2024-07-21 22:09:05.235][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-21 22:09:05.236][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-21 22:09:05.237][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-21 22:09:05.238][self$setPropertyValue]
biodb.DEBUG[2024-07-21 22:09:05.239][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-07-21 22:09:05.241][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:05.242][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-07-21 22:09:05.243][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:05.244][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-21 22:09:05.245][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:05.246][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-21 22:09:05.247][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-21 22:09:05.248][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-21 22:09:05.249][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-21 22:09:05.250][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-21 22:09:05.251][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-21 22:09:05.252][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-07-21 22:09:05.253][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-21 22:09:05.254][self$setPropertyValue]
biodb.DEBUG[2024-07-21 22:09:05.255][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:05.256][self$setPropertyValue]
biodb.DEBUG[2024-07-21 22:09:05.257][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-21 22:09:05.258][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 22:09:05.259][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 22:09:05.260][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-21 22:09:05.261][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 22:09:05.262][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 22:09:05.263][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-21 22:09:05.264][self$setPropertyValue]
biodb.DEBUG[2024-07-21 22:09:05.264][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-21 22:09:05.265][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-21 22:09:05.266][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-21 22:09:05.267][self$setPropertyValue]
biodb.DEBUG[2024-07-21 22:09:05.268][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-07-21 22:09:05.270][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:05.271][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-07-21 22:09:05.272][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:05.273][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-21 22:09:05.274][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:05.275][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-21 22:09:05.276][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-21 22:09:05.277][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-21 22:09:05.278][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-21 22:09:05.279][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-21 22:09:05.280][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-21 22:09:05.281][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-07-21 22:09:05.282][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-21 22:09:05.283][self$setPropertyValue]
biodb.DEBUG[2024-07-21 22:09:05.284][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:05.285][self$setPropertyValue]
biodb.DEBUG[2024-07-21 22:09:05.286][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-21 22:09:05.287][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 22:09:05.287][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 22:09:05.288][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-21 22:09:05.289][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 22:09:05.290][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 22:09:05.291][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-21 22:09:05.292][self$setPropertyValue]
biodb.DEBUG[2024-07-21 22:09:05.293][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-21 22:09:05.294][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-21 22:09:05.295][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-21 22:09:05.296][self$setPropertyValue]
biodb.DEBUG[2024-07-21 22:09:05.300][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-21 22:09:05.301][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:05.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:05.302][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:05.303][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:05.304][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:05.305][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:05.306][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:05.307][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:05.307][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:05.308][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:05.309][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:05.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:05.311][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:05.312][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:05.312][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:05.313][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:05.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:05.315][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:05.316][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:05.317][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:05.317][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:05.318][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:05.319][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:05.320][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:05.321][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:05.322][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:05.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:05.323][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:05.324][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:05.325][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:05.326][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:05.327][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:05.328][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:05.328][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:05.329][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:05.330][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:05.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:05.332][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:05.333][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:05.333][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:05.334][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:05.335][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:05.336][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:05.337][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:05.338][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:05.338][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:05.339][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:05.340][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:05.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:05.342][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:05.343][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:05.343][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:05.344][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:05.345][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:05.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:05.347][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:05.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:05.349][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:05.349][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:05.350][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:05.351][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:05.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:05.353][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:05.354][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:05.355][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:05.355][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:05.356][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:05.357][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:05.358][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:05.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:05.360][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:05.361][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:05.361][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:05.362][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:05.363][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:05.364][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:05.365][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:05.366][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:05.366][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:05.367][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:05.368][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:05.369][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:05.370][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:05.371][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:05.371][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:05.372][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:05.373][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:05.374][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-07-21 22:09:05.379][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-07-21 22:09:05.380][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-07-21 22:09:05.382][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-07-21 22:09:05.383][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-07-21 22:09:05.385][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-07-21 22:09:05.386][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-07-21 22:09:05.388][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-07-21 22:09:05.389][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-07-21 22:09:05.390][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-07-21 22:09:05.392][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-21 22:09:05.393][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-07-21 22:09:05.394][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-07-21 22:09:05.395][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-07-21 22:09:05.397][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-07-21 22:09:05.398][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-07-21 22:09:05.399][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-07-21 22:09:05.401][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-07-21 22:09:05.402][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-07-21 22:09:05.403][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-07-21 22:09:05.405][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-07-21 22:09:05.406][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-07-21 22:09:05.407][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-07-21 22:09:05.409][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-07-21 22:09:05.410][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-07-21 22:09:05.411][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-07-21 22:09:05.412][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-07-21 22:09:05.414][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-07-21 22:09:05.415][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-07-21 22:09:05.416][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-07-21 22:09:05.418][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-07-21 22:09:05.419][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-07-21 22:09:05.420][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-07-21 22:09:05.422][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-07-21 22:09:05.423][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-07-21 22:09:05.429][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-07-21 22:09:05.431][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-07-21 22:09:05.432][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-07-21 22:09:05.433][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-07-21 22:09:05.434][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-07-21 22:09:05.436][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-07-21 22:09:05.437][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-07-21 22:09:05.438][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-07-21 22:09:05.440][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-07-21 22:09:05.441][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-07-21 22:09:05.442][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-07-21 22:09:05.443][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-07-21 22:09:05.445][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-07-21 22:09:05.446][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-07-21 22:09:05.447][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-07-21 22:09:05.449][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-07-21 22:09:05.450][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-07-21 22:09:05.451][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-07-21 22:09:05.452][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-07-21 22:09:05.454][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-07-21 22:09:05.455][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-07-21 22:09:05.456][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-07-21 22:09:05.458][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-07-21 22:09:05.459][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-07-21 22:09:05.460][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-07-21 22:09:05.461][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-07-21 22:09:05.463][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-07-21 22:09:05.464][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-07-21 22:09:05.465][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-07-21 22:09:05.467][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-07-21 22:09:05.468][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-07-21 22:09:05.469][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-07-21 22:09:05.470][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-07-21 22:09:05.472][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-07-21 22:09:05.473][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-07-21 22:09:05.474][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-07-21 22:09:05.476][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-07-21 22:09:05.477][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-07-21 22:09:05.478][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-07-21 22:09:05.479][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-07-21 22:09:05.481][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-07-21 22:09:05.482][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-07-21 22:09:05.483][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-07-21 22:09:05.484][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-07-21 22:09:05.486][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-07-21 22:09:05.487][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-07-21 22:09:05.488][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-07-21 22:09:05.490][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-07-21 22:09:05.495][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-07-21 22:09:05.497][initialize] This is biodb version 1.12.0.
biodb.DEBUG[2024-07-21 22:09:05.500][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-21 22:09:05.501][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:05.502][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:05.503][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:05.503][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:05.508][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:05.509][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:05.510][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:05.510][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:05.511][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:05.512][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:05.513][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:05.514][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:05.515][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:05.515][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:05.516][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:05.517][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:05.518][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:05.519][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:05.520][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:05.520][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:05.521][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:05.522][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:05.523][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:05.524][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:05.524][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:05.525][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:05.526][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:05.527][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:05.528][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:05.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:05.529][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:05.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:05.531][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:05.532][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:05.533][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:05.533][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:05.534][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:05.535][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:05.536][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:05.537][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:05.538][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:05.538][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:05.539][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:05.540][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:05.541][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:05.542][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:05.543][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:05.543][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:05.544][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:05.545][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:05.546][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:05.547][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:05.548][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:05.548][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:05.549][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:05.550][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:05.551][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:05.552][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:05.552][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:05.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:05.554][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:05.555][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:05.556][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:05.557][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:05.557][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:05.558][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:05.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:05.560][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:05.561][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:05.562][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:05.562][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:05.563][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:05.564][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:05.565][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:05.566][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:05.567][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:05.567][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:05.568][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:05.569][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:05.570][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:05.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:05.572][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:05.572][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:05.573][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:05.574][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:05.575][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:05.576][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:05.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:05.577][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:05.578][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:05.579][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:05.580][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:05.581][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:05.582][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:05.582][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:05.583][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:05.584][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:05.585][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:05.586][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:05.586][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:05.587][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:05.588][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:05.589][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:05.590][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:05.591][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:05.591][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:05.592][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:05.593][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:05.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:05.595][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:05.596][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:05.596][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:05.597][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:05.598][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:05.599][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:05.600][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:05.601][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:05.601][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:05.602][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:05.603][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:05.604][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:05.605][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:05.606][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:05.607][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.19-bioc/R/site-library/biodbChebi/definitions.yml".
biodb.DEBUG[2024-07-21 22:09:05.617][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2024-07-21 22:09:05.619][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-21 22:09:05.620][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-07-21 22:09:05.621][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:05.622][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-21 22:09:05.622][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:05.623][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-21 22:09:05.624][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:05.625][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2024-07-21 22:09:05.626][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-07-21 22:09:05.627][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-21 22:09:05.628][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:05.629][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2024-07-21 22:09:05.630][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-21 22:09:05.631][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-07-21 22:09:05.631][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2024-07-21 22:09:05.631][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-07-21 22:09:05.631][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-07-21 22:09:05.631][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-07-21 22:09:05.631][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2024-07-21 22:09:05.631][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-07-21 22:09:05.631][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-07-21 22:09:05.631][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2024-07-21 22:09:05.631][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2024-07-21 22:09:05.631][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-07-21 22:09:05.632][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-07-21 22:09:05.633][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-21 22:09:05.633][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-21 22:09:05.633][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-21 22:09:05.634][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-07-21 22:09:05.635][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 22:09:05.636][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 22:09:05.636][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-21 22:09:05.637][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 22:09:05.638][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 22:09:05.639][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-21 22:09:05.640][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-07-21 22:09:05.640][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2024-07-21 22:09:05.641][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-21 22:09:05.642][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-21 22:09:05.643][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:05.643][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2024-07-21 22:09:05.643][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2024-07-21 22:09:05.649][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-07-21 22:09:05.651][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-21 22:09:05.652][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2024-07-21 22:09:05.653][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-07-21 22:09:05.655][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-07-21 22:09:05.656][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-07-21 22:09:05.684][super$initialize] Initialize connector chebi.
biodb.DEBUG[2024-07-21 22:09:05.685][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2024-07-21 22:09:05.690][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2024-07-21 22:09:05.694][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2024-07-21 22:09:05.699][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-21 22:09:05.700][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-21 22:09:05.701][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2024-07-21 22:09:05.702][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2024-07-21 22:09:05.713][biodb::testThat]
biodb.INFO [2024-07-21 22:09:05.714][biodb::testThat] Running test function test.entry.fields (" Entry fields have a correct value ").
biodb.INFO [2024-07-21 22:09:05.715][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-21 22:09:05.716][biodb::testThat]
biodb.TRACE[2024-07-21 22:09:05.719][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/bbs-3.19-bioc/R/site-library/biodbChebi/testref/entry-chebi-15440-content.xml".
biodb.DEBUG[2024-07-21 22:09:05.721][biodb$getFactory()$createEntryFromCo ...] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-21 22:09:05.725][biodb$getFactory()$createEntryFromCo ...] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-21 22:09:05.734][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:05.735][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:05.736][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:05.749][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:05.750][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:05.751][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:05.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:05.762][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:05.763][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:05.764][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:05.765][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:05.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:05.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:05.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:05.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:05.782][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 22:09:05.783][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 22:09:05.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:05.785][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:05.809][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 22:09:05.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 22:09:05.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:05.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:05.814][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 22:09:05.815][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 22:09:05.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:05.817][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:05.818][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 22:09:05.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 22:09:05.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:05.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:05.822][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 22:09:05.823][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 22:09:05.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:05.824][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:05.826][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 22:09:05.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 22:09:05.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:05.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:05.829][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 22:09:05.830][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 22:09:05.831][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:05.832][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:05.833][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 22:09:05.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 22:09:05.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:05.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:05.837][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:05.838][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:05.839][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:05.840][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:05.841][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:05.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:05.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:05.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:05.845][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 22:09:05.846][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:05.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:05.848][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:05.849][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 22:09:05.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:05.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:05.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:05.853][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:05.854][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:05.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:05.856][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:05.857][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:05.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:05.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:05.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:05.861][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:05.862][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:05.863][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:05.864][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:05.865][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:05.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:05.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:05.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:05.869][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 22:09:05.870][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 22:09:05.871][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:05.872][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:05.873][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 22:09:05.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 22:09:05.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:05.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:05.877][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 22:09:05.878][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 22:09:05.879][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:05.879][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:05.881][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 22:09:05.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 22:09:05.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:05.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:05.885][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:05.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:05.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:05.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:05.888][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:05.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:05.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:05.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:05.892][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:05.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:05.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:05.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:05.896][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:05.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:05.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:05.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:05.900][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:05.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:05.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:05.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:05.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:05.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:05.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:05.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:05.907][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:05.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:05.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:05.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:05.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:05.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:05.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:05.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:05.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:05.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:05.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:05.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:05.959][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:05.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:05.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:05.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:05.962][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 15440.
biodb.TRACE[2024-07-21 22:09:05.965][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 22:09:05.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 22:09:05.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:05.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:05.969][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 22:09:05.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 22:09:05.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:05.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:05.993][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 22:09:05.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 22:09:05.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:05.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:05.997][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 22:09:05.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 22:09:05.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.001][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:06.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:06.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.005][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:06.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:06.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.008][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-21 22:09:06.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-21 22:09:06.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.012][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-21 22:09:06.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-21 22:09:06.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.016][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-07-21 22:09:06.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-07-21 22:09:06.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.019][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-07-21 22:09:06.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-07-21 22:09:06.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:06.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:06.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.053][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:06.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:06.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:06.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:06.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:06.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:06.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:06.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:06.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.073][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:06.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:06.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:06.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:06.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:06.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:06.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.084][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:06.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:06.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.088][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:06.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:06.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.092][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:06.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:06.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.102][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:06.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:06.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:06.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:06.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:06.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:06.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.113][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:06.114][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:06.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.116][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:06.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:06.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.128][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:06.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:06.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.158][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:06.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:06.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.162][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:06.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:06.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.165][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:06.166][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:06.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.168][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.169][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:06.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:06.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.180][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:06.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:06.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.184][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:06.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:06.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.188][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:06.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:06.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.191][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:06.192][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:06.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.194][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.195][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:06.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:06.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.206][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 22:09:06.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 22:09:06.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.210][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 22:09:06.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 22:09:06.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.214][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 22:09:06.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 22:09:06.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.217][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 22:09:06.218][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 22:09:06.219][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.220][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.221][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 22:09:06.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 22:09:06.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.231][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:06.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:06.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.235][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:06.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:06.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.239][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:06.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:06.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.243][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:06.244][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:06.245][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.245][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.246][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:06.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:06.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.257][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:06.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:06.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.261][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:06.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:06.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.264][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:06.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:06.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.268][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:06.269][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:06.270][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.271][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.272][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:06.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:06.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.282][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 22:09:06.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 22:09:06.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.286][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 22:09:06.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 22:09:06.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.290][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 22:09:06.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 22:09:06.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.294][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 22:09:06.295][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 22:09:06.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.296][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.297][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 22:09:06.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 22:09:06.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.308][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-07-21 22:09:06.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 22:09:06.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.312][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-07-21 22:09:06.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 22:09:06.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.316][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-07-21 22:09:06.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 22:09:06.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.319][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-07-21 22:09:06.320][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 22:09:06.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.322][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.323][self$getBiodb()$getEntryFields()$get] Asked field names are: n.stars.
biodb.TRACE[2024-07-21 22:09:06.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 22:09:06.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.333][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:06.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:06.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.337][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:06.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:06.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.341][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:06.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:06.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.344][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:06.345][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:06.346][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.347][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.348][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:06.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:06.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.359][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 22:09:06.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 22:09:06.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.363][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 22:09:06.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 22:09:06.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.371][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 22:09:06.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 22:09:06.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.375][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 22:09:06.376][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 22:09:06.377][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.377][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.378][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 22:09:06.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 22:09:06.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.389][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 22:09:06.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 22:09:06.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.393][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 22:09:06.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 22:09:06.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.397][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 22:09:06.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 22:09:06.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.400][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 22:09:06.401][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 22:09:06.402][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.403][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.404][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 22:09:06.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 22:09:06.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.415][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 22:09:06.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 22:09:06.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.419][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 22:09:06.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 22:09:06.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.423][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 22:09:06.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 22:09:06.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.427][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 22:09:06.428][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 22:09:06.429][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.429][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.430][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 22:09:06.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 22:09:06.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.441][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:06.442][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:06.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.444][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.448][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 22:09:06.449][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 22:09:06.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.450][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.454][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 22:09:06.455][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 22:09:06.456][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.457][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.461][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 22:09:06.462][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 22:09:06.463][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.464][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.468][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 22:09:06.469][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 22:09:06.470][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.471][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.475][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:06.476][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:06.477][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.478][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.482][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:06.483][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:06.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.485][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.489][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:06.490][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:06.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.491][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.495][ef$get] Asked field names are: n.stars.
biodb.TRACE[2024-07-21 22:09:06.496][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 22:09:06.497][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.498][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.502][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:06.504][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:06.504][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.505][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.509][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 22:09:06.511][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 22:09:06.512][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.512][ef$get] fields variable is a list.
biodb.INFO [2024-07-21 22:09:06.519][biodb::testThat]
biodb.INFO [2024-07-21 22:09:06.520][biodb::testThat] Running test function test.rt.unit (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-07-21 22:09:06.521][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-21 22:09:06.522][biodb::testThat]
biodb.DEBUG[2024-07-21 22:09:06.536][private$loadEntries] Creating entries from ids [1]: "15440".
biodb.DEBUG[2024-07-21 22:09:06.543][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-21 22:09:06.548][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15440".
biodb.TRACE[2024-07-21 22:09:06.550][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 22:09:06.551][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15440.xml".
biodb.DEBUG[2024-07-21 22:09:06.552][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-21 22:09:06.580][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-21 22:09:06.582][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-21 22:09:06.584][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:06.585][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:06.585][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:06.590][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:06.591][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:06.591][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:06.592][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:06.595][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:06.596][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:06.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.598][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.599][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:06.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:06.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.618][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 22:09:06.619][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 22:09:06.620][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.621][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.623][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 22:09:06.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 22:09:06.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.626][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 22:09:06.627][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 22:09:06.628][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.629][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.630][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 22:09:06.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 22:09:06.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.634][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 22:09:06.635][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 22:09:06.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.637][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.638][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 22:09:06.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 22:09:06.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.642][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 22:09:06.643][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 22:09:06.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.645][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.646][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 22:09:06.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 22:09:06.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.650][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:06.651][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:06.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.653][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.654][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:06.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:06.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.658][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 22:09:06.659][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:06.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.660][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.662][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 22:09:06.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:06.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.665][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:06.666][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:06.667][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.668][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.669][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:06.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:06.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.673][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:06.674][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:06.675][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.676][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.678][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:06.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:06.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.681][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 22:09:06.682][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 22:09:06.683][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.684][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.685][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 22:09:06.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 22:09:06.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.689][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 22:09:06.690][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 22:09:06.691][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.692][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.693][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 22:09:06.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 22:09:06.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.697][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:06.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:06.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.701][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:06.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:06.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:06.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:06.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.708][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:06.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:06.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:06.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:06.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:06.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:06.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.720][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:06.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:06.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.724][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:06.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:06.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:06.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:06.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:06.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:06.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:06.735][self$createEntryFromContent] Accession numbers: 15440.
biodb.TRACE[2024-07-21 22:09:06.736][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-07-21 22:09:06.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-07-21 22:09:06.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.740][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-07-21 22:09:06.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-07-21 22:09:06.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.743][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-07-21 22:09:06.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-07-21 22:09:06.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-07-21 22:09:06.754][biodb::testThat]
biodb.INFO [2024-07-21 22:09:06.755][biodb::testThat] Running test function test.searchForEntries (" We can search for an entry by searchable field ").
biodb.INFO [2024-07-21 22:09:06.756][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-21 22:09:06.757][biodb::testThat]
biodb.TRACE[2024-07-21 22:09:06.760][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:06.761][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:06.762][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.762][ef$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:06.764][function(conn, opt)] Testing searchForEntries() with entry "15440" and field "name".
biodb.TRACE[2024-07-21 22:09:06.793][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:06.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:06.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.797][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:06.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:06.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.801][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:06.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:06.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:06.808][function(conn, opt)] With value "squalene".
biodb.DEBUG[2024-07-21 22:09:06.813][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2024-07-21 22:09:06.833][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 22:09:06.849][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2024-07-21 22:09:06.850][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 22:09:06.852][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2024-07-21 22:09:06.874][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-21 22:09:06.878][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 22:09:06.879][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-07-21 22:09:06.881][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 22:09:06.882][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-07-21 22:09:06.884][function(conn, opt)] With found IDs [1]: "15440".
biodb.TRACE[2024-07-21 22:09:06.895][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:06.897][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:06.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.899][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.900][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:06.901][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:06.902][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.903][ef$get] fields variable is a list.
biodb.INFO [2024-07-21 22:09:06.907][biodb::testThat]
biodb.INFO [2024-07-21 22:09:06.909][biodb::testThat] Running test function test.searchByName (" We can search for an entry by name. ").
biodb.INFO [2024-07-21 22:09:06.910][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-21 22:09:06.911][biodb::testThat]
biodb.TRACE[2024-07-21 22:09:06.935][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:06.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:06.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.939][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:06.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:06.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:06.943][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:06.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:06.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:06.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:07.006][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-21 22:09:07.009][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 22:09:07.011][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-07-21 22:09:07.012][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 22:09:07.013][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.INFO [2024-07-21 22:09:07.028][biodb::testThat]
biodb.INFO [2024-07-21 22:09:07.029][biodb::testThat] Running test function testEntryLoading (" We can load an entry from the database. ").
biodb.INFO [2024-07-21 22:09:07.030][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-21 22:09:07.031][biodb::testThat]
biodb.TRACE[2024-07-21 22:09:07.049][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 22:09:07.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 22:09:07.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:07.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:07.053][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 22:09:07.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 22:09:07.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:07.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:07.057][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 22:09:07.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 22:09:07.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:07.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:07.061][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 22:09:07.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 22:09:07.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:07.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:07.064][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:07.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:07.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:07.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:07.068][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:07.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:07.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:07.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:07.072][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-21 22:09:07.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-21 22:09:07.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:07.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:07.076][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-21 22:09:07.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-21 22:09:07.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:07.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:07.079][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-07-21 22:09:07.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-07-21 22:09:07.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:07.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:07.083][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-07-21 22:09:07.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-07-21 22:09:07.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:07.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:07.104][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 22:09:07.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 22:09:07.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:07.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:07.108][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 22:09:07.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 22:09:07.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:07.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:07.112][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 22:09:07.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 22:09:07.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:07.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:07.115][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 22:09:07.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 22:09:07.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:07.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:07.119][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:07.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:07.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:07.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:07.123][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:07.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:07.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:07.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:07.127][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-21 22:09:07.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-21 22:09:07.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:07.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:07.130][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-21 22:09:07.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-21 22:09:07.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:07.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:07.134][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-07-21 22:09:07.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-07-21 22:09:07.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:07.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:07.138][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-07-21 22:09:07.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-07-21 22:09:07.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:07.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-07-21 22:09:07.147][biodb::testThat]
biodb.INFO [2024-07-21 22:09:07.148][biodb::testThat] Running test function test.entry.page.url (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-07-21 22:09:07.149][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-21 22:09:07.150][biodb::testThat]
biodb.INFO [2024-07-21 22:09:07.158][biodb::testThat]
biodb.INFO [2024-07-21 22:09:07.159][biodb::testThat] Running test function test.entry.image.url (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-07-21 22:09:07.160][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-21 22:09:07.160][biodb::testThat]
biodb.INFO [2024-07-21 22:09:07.169][biodb::testThat]
biodb.INFO [2024-07-21 22:09:07.170][biodb::testThat] Running test function test.entry.page.url.download (" The entry page URL can be downloaded. ").
biodb.INFO [2024-07-21 22:09:07.171][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-21 22:09:07.172][biodb::testThat]
biodb.DEBUG[2024-07-21 22:09:07.176][function(conn, opt)] Trying to download "https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440".
biodb.DEBUG[2024-07-21 22:09:07.805][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/searchId.do?chebiId=15440.
biodb.INFO [2024-07-21 22:09:08.905][biodb::testThat]
biodb.INFO [2024-07-21 22:09:08.907][biodb::testThat] Running test function test.entry.image.url.download (" The entry image URL can be downloaded. ").
biodb.INFO [2024-07-21 22:09:08.909][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-21 22:09:08.911][biodb::testThat]
biodb.DEBUG[2024-07-21 22:09:09.363][getUrlContent] Use RCurl for downloading content of URL https://www.ebi.ac.uk/chebi/displayImage.do?defaultImage=true&imageIndex=0&chebiId=15440&dimensions=400.
biodb.TRACE[2024-07-21 22:09:09.884][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:09.886][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:09.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:09.891][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:09.893][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:09.895][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:09.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:09.900][ef$get] fields variable is a list.
biodb.INFO [2024-07-21 22:09:09.904][biodb::testThat]
biodb.INFO [2024-07-21 22:09:09.906][biodb::testThat] Running test function test.searchCompound (" We can search for a compound ").
biodb.INFO [2024-07-21 22:09:09.908][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-21 22:09:09.910][biodb::testThat]
biodb.TRACE[2024-07-21 22:09:09.929][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:09.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:09.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:09.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:09.936][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:09.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:09.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:09.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:09.942][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:09.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:09.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:09.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:10.057][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-21 22:09:10.061][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 22:09:10.062][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-07-21 22:09:10.064][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 22:09:10.065][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-07-21 22:09:10.130][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-21 22:09:10.134][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 22:09:10.135][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-07-21 22:09:10.137][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 22:09:10.138][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.TRACE[2024-07-21 22:09:10.154][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-21 22:09:10.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-21 22:09:10.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.163][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:10.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:10.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.167][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:10.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:10.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.172][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:10.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:10.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.176][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:10.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:10.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.180][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:10.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:10.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:10.192][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-21 22:09:10.196][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 22:09:10.197][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-07-21 22:09:10.198][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 22:09:10.200][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-07-21 22:09:10.203][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:10.203][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:10.204][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:10.209][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:10.210][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:10.211][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:10.212][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:10.213][private$loadEntries] Creating entries from ids [1]: "192288".
biodb.DEBUG[2024-07-21 22:09:10.280][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-21 22:09:10.284][cch$loadFileContent] Trying to load 1 files from cache: [1]: "192288".
biodb.TRACE[2024-07-21 22:09:10.285][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 22:09:10.287][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/192288.xml".
biodb.DEBUG[2024-07-21 22:09:10.289][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-21 22:09:10.290][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-21 22:09:10.292][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-21 22:09:10.294][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:10.295][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:10.296][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:10.303][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:10.304][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:10.305][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:10.306][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:10.310][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:10.311][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:10.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.313][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:10.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:10.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.319][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 22:09:10.320][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 22:09:10.322][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.323][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.324][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 22:09:10.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 22:09:10.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.329][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 22:09:10.330][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 22:09:10.331][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.332][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.334][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 22:09:10.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 22:09:10.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.338][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 22:09:10.340][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 22:09:10.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.342][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.343][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 22:09:10.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 22:09:10.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.347][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 22:09:10.348][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 22:09:10.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.350][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.352][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 22:09:10.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 22:09:10.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.356][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:10.357][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:10.358][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.359][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.360][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 22:09:10.361][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:10.362][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.364][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.365][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 22:09:10.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:10.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.369][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:10.370][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:10.371][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.372][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.374][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:10.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:10.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.378][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:10.379][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:10.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.381][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.383][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:10.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:10.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.387][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 22:09:10.388][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 22:09:10.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.390][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.391][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 22:09:10.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 22:09:10.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.396][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 22:09:10.397][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 22:09:10.398][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.399][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.400][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 22:09:10.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 22:09:10.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.405][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:10.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:10.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.409][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:10.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:10.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.413][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:10.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:10.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.433][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:10.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:10.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.437][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:10.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:10.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.441][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:10.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:10.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:10.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:10.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:10.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:10.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.454][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:10.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:10.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:10.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:10.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:10.461][self$createEntryFromContent] Accession numbers: 192288.
biodb.TRACE[2024-07-21 22:09:10.470][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:10.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:10.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.474][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:10.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:10.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.478][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:10.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:10.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:10.483][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-21 22:09:10.486][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 22:09:10.487][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-07-21 22:09:10.488][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 22:09:10.490][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-07-21 22:09:10.504][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:10.505][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:10.506][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:10.510][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:10.511][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:10.512][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:10.513][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:10.514][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:10.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:10.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.518][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:10.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:10.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.521][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:10.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:10.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:10.525][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:10.526][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:10.527][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:10.531][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:10.532][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:10.533][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:10.534][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:10.535][private$loadEntries] Creating entries from ids [1]: "209892".
biodb.DEBUG[2024-07-21 22:09:10.536][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-21 22:09:10.537][cch$loadFileContent] Trying to load 1 files from cache: [1]: "209892".
biodb.TRACE[2024-07-21 22:09:10.539][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 22:09:10.540][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/209892.xml".
biodb.DEBUG[2024-07-21 22:09:10.541][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-21 22:09:10.542][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-21 22:09:10.543][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-21 22:09:10.545][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:10.546][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:10.547][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:10.551][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:10.552][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:10.553][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:10.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:10.556][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:10.557][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:10.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.559][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:10.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:10.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.564][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 22:09:10.565][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 22:09:10.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.566][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.568][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 22:09:10.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 22:09:10.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.572][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 22:09:10.573][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 22:09:10.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.574][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.576][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 22:09:10.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 22:09:10.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.580][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 22:09:10.581][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 22:09:10.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.583][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.584][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 22:09:10.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 22:09:10.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.588][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 22:09:10.589][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 22:09:10.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.591][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.592][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 22:09:10.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 22:09:10.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.601][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:10.602][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:10.603][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.604][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.605][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 22:09:10.606][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:10.607][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.608][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.609][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 22:09:10.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:10.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.613][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:10.614][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:10.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.616][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.617][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:10.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:10.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.621][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:10.622][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:10.623][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.624][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.626][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:10.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:10.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.630][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 22:09:10.631][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 22:09:10.632][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.633][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.634][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 22:09:10.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 22:09:10.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.638][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 22:09:10.639][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 22:09:10.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.641][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.642][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 22:09:10.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 22:09:10.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.646][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:10.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:10.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.650][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:10.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:10.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:10.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:10.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.658][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:10.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:10.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.662][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:10.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:10.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:10.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:10.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:10.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:10.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.674][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:10.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:10.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:10.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:10.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.682][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:10.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:10.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:10.686][self$createEntryFromContent] Accession numbers: 209892.
biodb.TRACE[2024-07-21 22:09:10.687][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:10.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:10.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.691][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:10.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:10.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.695][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:10.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:10.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:10.716][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-21 22:09:10.719][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 22:09:10.721][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-07-21 22:09:10.722][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 22:09:10.723][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-07-21 22:09:10.727][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:10.728][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:10.728][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:10.733][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:10.734][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:10.735][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:10.735][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:10.737][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:10.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:10.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.740][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:10.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:10.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.744][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:10.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:10.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:10.748][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:10.749][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:10.750][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:10.755][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:10.756][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:10.757][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:10.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:10.759][private$loadEntries] Creating entries from ids [1]: "26747".
biodb.DEBUG[2024-07-21 22:09:10.760][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-21 22:09:10.761][cch$loadFileContent] Trying to load 1 files from cache: [1]: "26747".
biodb.TRACE[2024-07-21 22:09:10.763][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 22:09:10.764][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/26747.xml".
biodb.DEBUG[2024-07-21 22:09:10.765][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-21 22:09:10.767][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-21 22:09:10.768][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-21 22:09:10.769][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:10.770][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:10.771][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:10.776][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:10.777][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:10.778][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:10.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:10.786][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:10.787][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:10.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.789][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:10.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:10.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.795][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 22:09:10.796][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 22:09:10.797][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.798][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.799][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 22:09:10.800][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 22:09:10.801][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.802][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.803][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 22:09:10.804][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 22:09:10.805][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.806][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.807][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 22:09:10.808][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 22:09:10.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.810][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.812][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:10.813][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:10.813][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.814][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.816][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 22:09:10.817][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:10.818][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.818][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.820][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:10.821][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:10.822][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.822][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.824][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:10.825][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:10.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.827][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.828][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:10.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:10.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.832][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 22:09:10.833][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 22:09:10.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.835][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.836][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 22:09:10.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 22:09:10.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.840][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 22:09:10.841][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 22:09:10.842][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.843][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.844][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:10.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:10.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.848][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:10.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:10.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:10.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:10.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.856][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:10.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:10.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:10.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:10.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.863][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:10.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:10.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.867][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:10.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:10.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:10.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:10.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:10.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:10.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:10.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:10.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:10.883][self$createEntryFromContent] Accession numbers: 26747.
biodb.TRACE[2024-07-21 22:09:10.884][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:10.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:10.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.888][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:10.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:10.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.892][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:10.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:10.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.896][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:10.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:10.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.899][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:10.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:10.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:10.903][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:10.904][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:10.905][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:10.909][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:10.910][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:10.911][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:10.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:10.913][private$loadEntries] Creating entries from ids [1]: "59285".
biodb.DEBUG[2024-07-21 22:09:10.914][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-21 22:09:10.915][cch$loadFileContent] Trying to load 1 files from cache: [1]: "59285".
biodb.TRACE[2024-07-21 22:09:10.917][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 22:09:10.918][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/59285.xml".
biodb.DEBUG[2024-07-21 22:09:10.919][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-21 22:09:10.921][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-21 22:09:10.922][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-21 22:09:10.923][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:10.924][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:10.925][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:10.929][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:10.930][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:10.931][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:10.932][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:10.935][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:10.936][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:10.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.937][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:10.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:10.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.943][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 22:09:10.944][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 22:09:10.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.945][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.947][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 22:09:10.948][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 22:09:10.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.950][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.951][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 22:09:10.952][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 22:09:10.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.954][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.955][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 22:09:10.956][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 22:09:10.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.964][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.965][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:10.966][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:10.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.968][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.969][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 22:09:10.970][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:10.971][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.972][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.973][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:10.974][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:10.975][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.976][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.977][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:10.978][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:10.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.980][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.982][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:10.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:10.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.986][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 22:09:10.987][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 22:09:10.988][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.988][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.990][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 22:09:10.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 22:09:10.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.994][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 22:09:10.995][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 22:09:10.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:10.996][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:10.998][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:10.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:11.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.001][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:11.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:11.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:11.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:11.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.009][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:11.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:11.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:11.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:11.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:11.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:11.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:11.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:11.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:11.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:11.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:11.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:11.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.032][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:11.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:11.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:11.036][self$createEntryFromContent] Accession numbers: 59285.
biodb.TRACE[2024-07-21 22:09:11.037][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:11.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:11.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.041][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:11.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:11.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.045][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:11.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:11.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.049][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:11.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:11.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.052][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:11.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:11.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:11.057][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:11.058][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:11.058][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:11.063][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:11.064][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:11.064][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:11.065][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:11.066][private$loadEntries] Creating entries from ids [1]: "75174".
biodb.DEBUG[2024-07-21 22:09:11.067][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-21 22:09:11.069][cch$loadFileContent] Trying to load 1 files from cache: [1]: "75174".
biodb.TRACE[2024-07-21 22:09:11.070][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 22:09:11.072][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/75174.xml".
biodb.DEBUG[2024-07-21 22:09:11.073][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-21 22:09:11.074][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-21 22:09:11.075][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-21 22:09:11.076][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:11.077][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:11.078][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:11.083][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:11.084][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:11.084][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:11.085][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:11.088][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:11.089][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:11.089][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.090][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:11.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:11.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.095][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 22:09:11.096][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 22:09:11.097][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.098][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.099][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 22:09:11.100][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 22:09:11.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.102][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.104][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 22:09:11.105][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 22:09:11.105][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.106][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.108][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 22:09:11.109][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 22:09:11.110][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.110][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.112][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:11.113][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:11.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.114][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.116][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 22:09:11.117][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:11.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.118][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.120][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:11.121][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:11.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.122][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.123][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:11.124][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:11.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.126][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.128][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:11.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:11.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.136][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 22:09:11.137][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 22:09:11.138][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.139][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.140][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 22:09:11.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 22:09:11.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.144][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 22:09:11.145][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 22:09:11.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.147][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.148][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:11.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:11.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.152][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:11.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:11.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:11.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:11.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.160][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:11.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:11.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:11.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:11.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:11.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:11.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:11.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:11.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:11.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:11.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.178][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:11.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:11.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:11.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:11.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:11.186][self$createEntryFromContent] Accession numbers: 75174.
biodb.TRACE[2024-07-21 22:09:11.187][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:11.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:11.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.191][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:11.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:11.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.194][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:11.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:11.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.198][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:11.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:11.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.202][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:11.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:11.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:11.206][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:11.207][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:11.208][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:11.212][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:11.213][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:11.214][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:11.215][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:11.216][private$loadEntries] Creating entries from ids [1]: "15441".
biodb.DEBUG[2024-07-21 22:09:11.217][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-21 22:09:11.218][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15441".
biodb.TRACE[2024-07-21 22:09:11.220][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 22:09:11.221][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15441.xml".
biodb.DEBUG[2024-07-21 22:09:11.222][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-21 22:09:11.223][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-21 22:09:11.224][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-21 22:09:11.226][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:11.227][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:11.228][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:11.232][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:11.233][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:11.234][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:11.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:11.237][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:11.239][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:11.239][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.240][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.242][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:11.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:11.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.245][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 22:09:11.246][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 22:09:11.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.248][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.249][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 22:09:11.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 22:09:11.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.253][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 22:09:11.254][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 22:09:11.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.256][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.258][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 22:09:11.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 22:09:11.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.261][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 22:09:11.262][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 22:09:11.263][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.264][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.265][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 22:09:11.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 22:09:11.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.269][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 22:09:11.270][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 22:09:11.271][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.272][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.273][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 22:09:11.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 22:09:11.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.277][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:11.278][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:11.279][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.280][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.281][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:11.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:11.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.285][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 22:09:11.286][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:11.287][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.288][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.289][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 22:09:11.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:11.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.293][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:11.294][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:11.295][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.296][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.297][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:11.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:11.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.301][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:11.302][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:11.303][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.309][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.311][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:11.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:11.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.315][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 22:09:11.316][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 22:09:11.317][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.317][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.319][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 22:09:11.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 22:09:11.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.323][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 22:09:11.324][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 22:09:11.325][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.326][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.327][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 22:09:11.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 22:09:11.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.331][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:11.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:11.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.335][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:11.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:11.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:11.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:11.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.342][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:11.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:11.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:11.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:11.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:11.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:11.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.354][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:11.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:11.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.358][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:11.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:11.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.361][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:11.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:11.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:11.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:11.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:11.369][self$createEntryFromContent] Accession numbers: 15441.
biodb.TRACE[2024-07-21 22:09:11.370][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:11.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:11.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.374][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:11.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:11.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.377][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:11.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:11.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:11.381][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:11.382][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:11.383][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:11.387][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:11.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:11.389][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:11.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:11.391][private$loadEntries] Creating entries from ids [1]: "15442".
biodb.DEBUG[2024-07-21 22:09:11.392][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-21 22:09:11.393][cch$loadFileContent] Trying to load 1 files from cache: [1]: "15442".
biodb.TRACE[2024-07-21 22:09:11.394][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 22:09:11.396][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/15442.xml".
biodb.DEBUG[2024-07-21 22:09:11.397][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-21 22:09:11.398][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-21 22:09:11.399][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-21 22:09:11.401][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:11.402][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:11.402][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:11.407][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:11.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:11.408][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:11.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:11.412][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:11.413][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:11.414][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.414][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:11.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:11.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.420][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 22:09:11.421][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 22:09:11.421][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.422][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.424][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 22:09:11.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 22:09:11.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.427][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 22:09:11.428][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 22:09:11.429][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.430][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.432][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 22:09:11.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 22:09:11.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.436][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 22:09:11.437][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 22:09:11.438][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.438][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.440][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 22:09:11.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 22:09:11.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.444][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 22:09:11.445][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 22:09:11.446][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.447][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.448][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 22:09:11.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 22:09:11.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.452][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:11.453][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:11.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.455][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.457][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:11.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:11.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.461][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 22:09:11.462][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:11.463][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.464][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.465][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 22:09:11.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:11.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.469][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:11.470][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:11.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.472][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.473][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:11.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:11.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.477][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:11.486][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:11.487][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.488][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.490][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:11.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:11.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.494][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 22:09:11.495][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 22:09:11.496][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.497][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.498][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 22:09:11.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 22:09:11.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.502][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 22:09:11.503][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 22:09:11.504][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.505][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.507][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 22:09:11.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 22:09:11.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.511][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:11.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:11.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.515][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:11.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:11.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.519][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:11.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:11.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.522][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:11.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:11.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:11.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:11.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:11.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:11.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:11.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:11.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.538][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:11.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:11.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:11.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:11.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:11.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:11.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:11.555][self$createEntryFromContent] Accession numbers: 15442.
biodb.TRACE[2024-07-21 22:09:11.556][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:11.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:11.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.561][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:11.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:11.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.565][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:11.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:11.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:11.570][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:11.571][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:11.572][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:11.578][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:11.579][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:11.580][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:11.581][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:11.583][private$loadEntries] Creating entries from ids [1]: "57310".
biodb.DEBUG[2024-07-21 22:09:11.584][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-21 22:09:11.586][cch$loadFileContent] Trying to load 1 files from cache: [1]: "57310".
biodb.TRACE[2024-07-21 22:09:11.587][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 22:09:11.589][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/57310.xml".
biodb.DEBUG[2024-07-21 22:09:11.590][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-21 22:09:11.592][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-21 22:09:11.593][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-21 22:09:11.595][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:11.596][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:11.597][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:11.602][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:11.603][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:11.604][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:11.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:11.607][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:11.609][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:11.610][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.611][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.612][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:11.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:11.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.616][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 22:09:11.617][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 22:09:11.618][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.619][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.621][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 22:09:11.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 22:09:11.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.625][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 22:09:11.626][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 22:09:11.627][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.628][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.630][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 22:09:11.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 22:09:11.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.634][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 22:09:11.635][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 22:09:11.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.637][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.638][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 22:09:11.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 22:09:11.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.642][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 22:09:11.643][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 22:09:11.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.645][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.647][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 22:09:11.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 22:09:11.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.651][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:11.652][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:11.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.654][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.656][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 22:09:11.657][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:11.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.659][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.660][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 22:09:11.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:11.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.665][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:11.666][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:11.667][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.668][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.669][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:11.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:11.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.673][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:11.674][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:11.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.677][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.692][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:11.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:11.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.696][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 22:09:11.697][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 22:09:11.698][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.699][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.700][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 22:09:11.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 22:09:11.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.705][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 22:09:11.706][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 22:09:11.707][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.708][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.709][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 22:09:11.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 22:09:11.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.714][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:11.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:11.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.718][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:11.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:11.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.722][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:11.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:11.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.726][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:11.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:11.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:11.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:11.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:11.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:11.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:11.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:11.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:11.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:11.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.746][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:11.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:11.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:11.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:11.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:11.754][self$createEntryFromContent] Accession numbers: 57310.
biodb.TRACE[2024-07-21 22:09:11.755][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:11.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:11.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.759][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:11.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:11.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.763][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:11.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:11.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:11.767][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:11.767][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:11.768][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:11.772][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:11.773][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:11.774][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:11.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:11.776][private$loadEntries] Creating entries from ids [1]: "66216".
biodb.DEBUG[2024-07-21 22:09:11.777][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-21 22:09:11.779][cch$loadFileContent] Trying to load 1 files from cache: [1]: "66216".
biodb.TRACE[2024-07-21 22:09:11.780][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 22:09:11.781][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/66216.xml".
biodb.DEBUG[2024-07-21 22:09:11.782][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-21 22:09:11.784][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-21 22:09:11.785][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-21 22:09:11.786][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:11.787][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:11.788][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:11.792][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:11.793][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:11.794][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:11.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:11.797][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:11.798][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:11.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.800][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:11.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:11.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.805][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 22:09:11.806][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 22:09:11.807][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.808][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.809][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 22:09:11.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 22:09:11.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.813][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 22:09:11.814][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 22:09:11.815][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.816][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.817][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 22:09:11.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 22:09:11.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.821][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 22:09:11.822][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 22:09:11.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.824][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.825][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 22:09:11.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 22:09:11.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.829][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 22:09:11.830][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 22:09:11.831][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.831][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.833][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 22:09:11.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 22:09:11.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.836][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:11.837][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:11.838][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.839][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.840][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 22:09:11.841][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:11.842][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.843][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.845][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 22:09:11.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:11.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.848][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:11.849][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:11.850][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.851][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.852][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:11.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:11.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.856][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:11.857][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:11.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.859][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.861][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:11.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:11.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.869][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 22:09:11.870][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 22:09:11.871][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.872][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.873][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 22:09:11.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 22:09:11.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.877][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 22:09:11.878][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 22:09:11.879][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.880][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.881][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 22:09:11.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 22:09:11.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.885][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:11.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:11.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.889][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:11.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:11.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.893][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:11.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:11.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.897][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:11.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:11.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.901][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:11.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:11.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:11.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:11.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.909][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:11.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:11.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.913][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:11.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:11.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.916][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:11.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:11.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:11.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:11.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:11.924][self$createEntryFromContent] Accession numbers: 66216.
biodb.TRACE[2024-07-21 22:09:11.925][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:11.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:11.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.929][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:11.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:11.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.933][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:11.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:11.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:11.936][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:11.937][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:11.938][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:11.942][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:11.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:11.944][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:11.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:11.946][private$loadEntries] Creating entries from ids [1]: "70860".
biodb.DEBUG[2024-07-21 22:09:11.947][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-21 22:09:11.949][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70860".
biodb.TRACE[2024-07-21 22:09:11.950][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 22:09:11.951][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70860.xml".
biodb.DEBUG[2024-07-21 22:09:11.952][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-21 22:09:11.954][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-21 22:09:11.955][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-21 22:09:11.956][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:11.957][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:11.958][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:11.962][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:11.963][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:11.964][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:11.965][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:11.967][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:11.968][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:11.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.970][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:11.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:11.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.975][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 22:09:11.976][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 22:09:11.977][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.978][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.979][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 22:09:11.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 22:09:11.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.983][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 22:09:11.984][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 22:09:11.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.986][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.987][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 22:09:11.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 22:09:11.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.991][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 22:09:11.992][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 22:09:11.993][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.994][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.995][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 22:09:11.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 22:09:11.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:11.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:11.999][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 22:09:12.000][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 22:09:12.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.002][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.003][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 22:09:12.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 22:09:12.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.007][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:12.008][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:12.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.010][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.011][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 22:09:12.012][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:12.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.014][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.015][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 22:09:12.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:12.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.019][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:12.020][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:12.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.022][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.023][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:12.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:12.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.027][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:12.028][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:12.028][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.029][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.031][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:12.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:12.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.039][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 22:09:12.040][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 22:09:12.041][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.042][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.043][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 22:09:12.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 22:09:12.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.047][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 22:09:12.048][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 22:09:12.049][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.050][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.051][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 22:09:12.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 22:09:12.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.055][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:12.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:12.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.059][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:12.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:12.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:12.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:12.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.067][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:12.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:12.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.070][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:12.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:12.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:12.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:12.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.078][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:12.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:12.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:12.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:12.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:12.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:12.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:12.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:12.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:12.093][self$createEntryFromContent] Accession numbers: 70860.
biodb.TRACE[2024-07-21 22:09:12.094][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:12.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:12.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.098][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:12.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:12.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.102][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:12.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:12.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:12.105][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:12.106][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:12.107][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:12.111][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:12.112][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:12.113][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:12.114][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:12.115][private$loadEntries] Creating entries from ids [1]: "70861".
biodb.DEBUG[2024-07-21 22:09:12.116][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-21 22:09:12.117][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70861".
biodb.TRACE[2024-07-21 22:09:12.119][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 22:09:12.120][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70861.xml".
biodb.DEBUG[2024-07-21 22:09:12.121][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-21 22:09:12.122][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-21 22:09:12.124][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-21 22:09:12.125][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:12.126][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:12.127][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:12.131][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:12.132][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:12.133][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:12.134][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:12.136][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:12.137][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:12.138][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.139][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:12.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:12.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.144][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 22:09:12.145][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 22:09:12.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.147][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.148][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 22:09:12.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 22:09:12.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.152][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 22:09:12.153][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 22:09:12.153][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.154][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.156][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 22:09:12.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 22:09:12.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.159][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 22:09:12.161][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 22:09:12.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.162][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.164][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 22:09:12.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 22:09:12.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.167][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 22:09:12.168][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 22:09:12.169][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.170][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.171][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 22:09:12.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 22:09:12.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.175][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:12.176][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:12.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.178][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.179][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 22:09:12.180][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:12.181][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.182][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.183][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 22:09:12.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:12.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.187][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:12.188][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:12.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.190][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.191][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:12.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:12.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.195][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:12.196][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:12.197][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.198][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.199][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:12.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:12.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.203][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 22:09:12.204][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 22:09:12.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.211][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.212][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 22:09:12.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 22:09:12.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.216][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 22:09:12.217][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 22:09:12.218][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.219][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.220][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 22:09:12.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 22:09:12.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.224][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:12.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:12.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.228][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:12.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:12.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.232][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:12.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:12.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.235][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:12.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:12.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:12.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:12.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:12.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:12.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:12.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:12.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:12.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:12.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.254][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:12.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:12.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:12.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:12.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:12.262][self$createEntryFromContent] Accession numbers: 70861.
biodb.TRACE[2024-07-21 22:09:12.263][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:12.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:12.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.267][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:12.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:12.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.270][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:12.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:12.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:12.274][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:12.275][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:12.276][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:12.281][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:12.282][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:12.283][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:12.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:12.285][private$loadEntries] Creating entries from ids [1]: "78662".
biodb.DEBUG[2024-07-21 22:09:12.286][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-21 22:09:12.287][cch$loadFileContent] Trying to load 1 files from cache: [1]: "78662".
biodb.TRACE[2024-07-21 22:09:12.288][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 22:09:12.290][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/78662.xml".
biodb.DEBUG[2024-07-21 22:09:12.291][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-21 22:09:12.292][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-21 22:09:12.293][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-21 22:09:12.295][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:12.295][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:12.296][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:12.301][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:12.302][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:12.302][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:12.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:12.306][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:12.307][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:12.308][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.309][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:12.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:12.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.314][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 22:09:12.315][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 22:09:12.316][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.316][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.318][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 22:09:12.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 22:09:12.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.322][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 22:09:12.322][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 22:09:12.323][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.324][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.326][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 22:09:12.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 22:09:12.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.329][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 22:09:12.330][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 22:09:12.331][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.332][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.333][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 22:09:12.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 22:09:12.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.337][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 22:09:12.338][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 22:09:12.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.340][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.341][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 22:09:12.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 22:09:12.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.345][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:12.346][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:12.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.348][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.349][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 22:09:12.350][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:12.351][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.352][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.353][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 22:09:12.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:12.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.357][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:12.358][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:12.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.360][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.361][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:12.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:12.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.365][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:12.366][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:12.366][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.367][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.369][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:12.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:12.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.373][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 22:09:12.374][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 22:09:12.374][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.380][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.381][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 22:09:12.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 22:09:12.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.385][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 22:09:12.386][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 22:09:12.387][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.388][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.389][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 22:09:12.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 22:09:12.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.393][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:12.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:12.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.397][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:12.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:12.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:12.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:12.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.405][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:12.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:12.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:12.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:12.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.412][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:12.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:12.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:12.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:12.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:12.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:12.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:12.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:12.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:12.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:12.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:12.432][self$createEntryFromContent] Accession numbers: 78662.
biodb.TRACE[2024-07-21 22:09:12.433][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:12.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:12.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.437][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:12.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:12.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.440][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:12.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:12.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:12.444][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:12.445][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:12.446][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:12.450][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:12.451][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:12.452][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:12.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:12.454][private$loadEntries] Creating entries from ids [1]: "85084".
biodb.DEBUG[2024-07-21 22:09:12.455][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-21 22:09:12.456][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85084".
biodb.TRACE[2024-07-21 22:09:12.457][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 22:09:12.459][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85084.xml".
biodb.DEBUG[2024-07-21 22:09:12.460][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-21 22:09:12.461][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-21 22:09:12.462][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-21 22:09:12.464][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:12.465][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:12.466][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:12.470][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:12.471][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:12.472][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:12.472][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:12.474][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:12.475][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:12.476][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.477][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.478][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:12.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:12.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.482][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 22:09:12.483][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 22:09:12.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.485][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.486][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 22:09:12.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 22:09:12.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.490][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 22:09:12.491][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 22:09:12.492][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.493][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.494][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 22:09:12.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 22:09:12.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.498][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 22:09:12.499][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 22:09:12.500][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.501][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.502][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 22:09:12.503][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 22:09:12.504][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.505][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.506][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:12.507][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:12.508][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.509][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.510][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 22:09:12.511][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:12.512][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.513][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.514][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 22:09:12.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:12.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.518][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:12.519][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:12.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.520][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.522][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:12.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:12.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.525][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:12.526][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:12.527][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.528][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.530][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:12.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:12.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.533][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 22:09:12.534][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 22:09:12.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.536][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.538][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 22:09:12.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 22:09:12.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.541][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 22:09:12.542][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 22:09:12.543][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.544][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.546][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:12.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:12.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.554][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:12.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:12.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:12.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:12.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.562][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:12.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:12.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:12.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:12.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.570][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:12.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:12.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:12.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:12.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:12.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:12.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:12.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:12.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.585][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:12.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:12.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:12.588][self$createEntryFromContent] Accession numbers: 85084.
biodb.TRACE[2024-07-21 22:09:12.589][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:12.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:12.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.593][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:12.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:12.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.597][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:12.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:12.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:12.601][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:12.601][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:12.602][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:12.607][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:12.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:12.608][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:12.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:12.610][private$loadEntries] Creating entries from ids [1]: "85086".
biodb.DEBUG[2024-07-21 22:09:12.611][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-21 22:09:12.613][cch$loadFileContent] Trying to load 1 files from cache: [1]: "85086".
biodb.TRACE[2024-07-21 22:09:12.614][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 22:09:12.615][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/85086.xml".
biodb.DEBUG[2024-07-21 22:09:12.617][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-21 22:09:12.618][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-21 22:09:12.619][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-21 22:09:12.620][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:12.621][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:12.622][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:12.626][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:12.627][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:12.628][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:12.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:12.631][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:12.632][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:12.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.634][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:12.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:12.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.639][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 22:09:12.640][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 22:09:12.641][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.642][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.643][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 22:09:12.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 22:09:12.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.647][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 22:09:12.648][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 22:09:12.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.649][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.651][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 22:09:12.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 22:09:12.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.654][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 22:09:12.655][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 22:09:12.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.657][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.658][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 22:09:12.659][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 22:09:12.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.661][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.662][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:12.663][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:12.664][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.665][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.666][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 22:09:12.667][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:12.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.669][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.670][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 22:09:12.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:12.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.674][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:12.675][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:12.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.677][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.678][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:12.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:12.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.682][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:12.683][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:12.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.685][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.686][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:12.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:12.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.690][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 22:09:12.691][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 22:09:12.692][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.693][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.694][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 22:09:12.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 22:09:12.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.698][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 22:09:12.699][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 22:09:12.700][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.700][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.702][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:12.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:12.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.705][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:12.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:12.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:12.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:12.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.713][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:12.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:12.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:12.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:12.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:12.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:12.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:12.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:12.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.762][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:12.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:12.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:12.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:12.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:12.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:12.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:12.773][self$createEntryFromContent] Accession numbers: 85086.
biodb.TRACE[2024-07-21 22:09:12.774][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:12.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:12.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.778][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:12.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:12.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.782][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:12.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:12.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:12.786][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:12.787][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:12.787][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:12.792][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:12.793][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:12.793][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:12.794][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:12.795][private$loadEntries] Creating entries from ids [1]: "88123".
biodb.DEBUG[2024-07-21 22:09:12.796][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-21 22:09:12.798][cch$loadFileContent] Trying to load 1 files from cache: [1]: "88123".
biodb.TRACE[2024-07-21 22:09:12.799][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 22:09:12.801][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/88123.xml".
biodb.DEBUG[2024-07-21 22:09:12.802][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-21 22:09:12.803][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-21 22:09:12.804][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-21 22:09:12.806][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:12.807][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:12.807][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:12.812][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:12.813][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:12.813][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:12.814][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:12.816][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:12.817][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:12.818][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.819][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.820][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:12.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:12.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.824][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 22:09:12.825][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 22:09:12.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.827][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.828][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 22:09:12.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 22:09:12.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.832][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 22:09:12.833][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 22:09:12.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.835][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.836][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 22:09:12.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 22:09:12.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.840][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 22:09:12.841][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 22:09:12.842][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.843][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.844][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 22:09:12.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 22:09:12.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.848][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 22:09:12.849][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 22:09:12.850][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.851][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.852][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 22:09:12.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 22:09:12.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.856][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:12.857][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:12.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.859][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.860][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 22:09:12.861][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:12.862][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.863][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.864][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 22:09:12.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:12.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.869][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:12.870][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:12.870][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.871][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.872][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:12.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:12.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.876][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:12.877][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:12.878][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.879][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.881][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:12.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:12.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.885][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 22:09:12.886][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 22:09:12.887][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.887][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.889][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 22:09:12.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 22:09:12.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.893][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 22:09:12.894][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 22:09:12.894][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.895][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.897][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 22:09:12.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 22:09:12.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.901][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:12.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:12.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.904][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:12.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:12.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:12.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:12.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.912][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:12.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:12.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.916][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:12.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:12.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.926][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:12.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:12.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:12.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:12.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.934][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:12.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:12.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:12.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:12.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:12.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:12.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:12.946][self$createEntryFromContent] Accession numbers: 88123.
biodb.TRACE[2024-07-21 22:09:12.947][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:12.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:12.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.951][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:12.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:12.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.955][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:12.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:12.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:12.959][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:12.960][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:12.961][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:12.965][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:12.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:12.967][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:12.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:12.969][private$loadEntries] Creating entries from ids [1]: "134117".
biodb.DEBUG[2024-07-21 22:09:12.970][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-21 22:09:12.971][cch$loadFileContent] Trying to load 1 files from cache: [1]: "134117".
biodb.TRACE[2024-07-21 22:09:12.972][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 22:09:12.974][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/134117.xml".
biodb.DEBUG[2024-07-21 22:09:12.975][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-21 22:09:12.976][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-21 22:09:12.977][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-21 22:09:12.979][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:12.980][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:12.981][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:12.985][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:12.986][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:12.986][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:12.987][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:12.989][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:12.990][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:12.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.992][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.993][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:12.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:12.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:12.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:12.997][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 22:09:12.998][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 22:09:12.999][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.000][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.001][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 22:09:13.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 22:09:13.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.005][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 22:09:13.006][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 22:09:13.007][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.008][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.010][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 22:09:13.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 22:09:13.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.013][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 22:09:13.014][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 22:09:13.015][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.016][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.018][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 22:09:13.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 22:09:13.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.021][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 22:09:13.022][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 22:09:13.023][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.024][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.026][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 22:09:13.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 22:09:13.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.029][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:13.030][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:13.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.032][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.034][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 22:09:13.035][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:13.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.036][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.038][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 22:09:13.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:13.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.042][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:13.043][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:13.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.045][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.046][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:13.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:13.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.050][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:13.051][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:13.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.053][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.054][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:13.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:13.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.058][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 22:09:13.059][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 22:09:13.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.061][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.062][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 22:09:13.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 22:09:13.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.066][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 22:09:13.067][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 22:09:13.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.069][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.070][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 22:09:13.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 22:09:13.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.074][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:13.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:13.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.078][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:13.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:13.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:13.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:13.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.086][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:13.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:13.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.090][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:13.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:13.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:13.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:13.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:13.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:13.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:13.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:13.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:13.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:13.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.114][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:13.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:13.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:13.118][self$createEntryFromContent] Accession numbers: 134117.
biodb.TRACE[2024-07-21 22:09:13.119][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:13.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:13.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.123][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:13.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:13.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.127][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:13.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:13.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:13.131][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:13.131][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:13.132][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:13.137][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:13.137][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:13.138][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:13.139][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:13.140][private$loadEntries] Creating entries from ids [1]: "138307".
biodb.DEBUG[2024-07-21 22:09:13.141][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-21 22:09:13.143][cch$loadFileContent] Trying to load 1 files from cache: [1]: "138307".
biodb.TRACE[2024-07-21 22:09:13.144][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 22:09:13.145][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/138307.xml".
biodb.DEBUG[2024-07-21 22:09:13.146][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-21 22:09:13.148][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-21 22:09:13.149][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-21 22:09:13.150][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:13.151][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:13.152][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:13.156][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:13.157][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:13.158][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:13.159][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:13.161][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:13.162][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:13.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.164][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:13.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:13.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.169][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 22:09:13.170][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 22:09:13.171][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.172][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.173][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 22:09:13.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 22:09:13.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.177][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 22:09:13.178][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 22:09:13.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.180][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.181][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 22:09:13.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 22:09:13.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.185][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 22:09:13.186][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 22:09:13.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.187][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.189][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 22:09:13.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 22:09:13.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.193][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 22:09:13.193][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 22:09:13.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.195][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.196][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 22:09:13.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 22:09:13.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.200][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:13.201][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:13.202][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.203][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.204][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 22:09:13.205][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:13.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.207][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.208][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 22:09:13.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:13.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.212][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:13.213][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:13.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.215][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.216][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:13.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:13.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.220][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:13.221][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:13.222][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.223][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.224][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:13.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:13.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.228][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 22:09:13.229][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 22:09:13.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.231][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.232][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 22:09:13.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 22:09:13.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.236][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 22:09:13.237][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 22:09:13.238][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.239][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.240][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 22:09:13.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 22:09:13.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.244][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:13.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:13.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.250][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:13.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:13.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:13.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:13.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.260][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:13.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:13.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:13.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:13.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.268][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:13.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:13.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:13.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:13.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:13.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:13.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:13.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:13.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.304][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:13.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:13.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:13.309][self$createEntryFromContent] Accession numbers: 138307.
biodb.TRACE[2024-07-21 22:09:13.310][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:13.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:13.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.314][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:13.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:13.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.318][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:13.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:13.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:13.322][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:13.323][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:13.324][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:13.329][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:13.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:13.331][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:13.332][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:13.333][private$loadEntries] Creating entries from ids [1]: "176803".
biodb.DEBUG[2024-07-21 22:09:13.334][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-21 22:09:13.336][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176803".
biodb.TRACE[2024-07-21 22:09:13.337][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 22:09:13.339][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176803.xml".
biodb.DEBUG[2024-07-21 22:09:13.340][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-21 22:09:13.341][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-21 22:09:13.342][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-21 22:09:13.344][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:13.345][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:13.346][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:13.350][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:13.351][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:13.352][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:13.353][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:13.356][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:13.357][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:13.358][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.359][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:13.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:13.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.364][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 22:09:13.365][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 22:09:13.366][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.367][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.368][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 22:09:13.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 22:09:13.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.373][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 22:09:13.374][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 22:09:13.375][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.376][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.377][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 22:09:13.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 22:09:13.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.381][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 22:09:13.382][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 22:09:13.383][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.384][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.386][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 22:09:13.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 22:09:13.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.390][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 22:09:13.391][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 22:09:13.392][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.393][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.394][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 22:09:13.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 22:09:13.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.398][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:13.399][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:13.400][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.401][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.402][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 22:09:13.403][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:13.404][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.405][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.407][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 22:09:13.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:13.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.411][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:13.412][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:13.413][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.414][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.415][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:13.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:13.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.419][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:13.420][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:13.421][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.422][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.424][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:13.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:13.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.428][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 22:09:13.429][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 22:09:13.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.431][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.432][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 22:09:13.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 22:09:13.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.436][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 22:09:13.437][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 22:09:13.438][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.439][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.440][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 22:09:13.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 22:09:13.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.444][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:13.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:13.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.448][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:13.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:13.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.452][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:13.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:13.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.456][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:13.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:13.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.460][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:13.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:13.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:13.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:13.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:13.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:13.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:13.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:13.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:13.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:13.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:13.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:13.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:13.487][self$createEntryFromContent] Accession numbers: 176803.
biodb.TRACE[2024-07-21 22:09:13.489][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:13.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:13.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.492][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:13.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:13.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.496][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:13.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:13.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:13.500][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:13.501][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:13.502][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:13.506][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:13.507][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:13.508][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:13.509][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:13.510][private$loadEntries] Creating entries from ids [1]: "176962".
biodb.DEBUG[2024-07-21 22:09:13.511][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-21 22:09:13.512][cch$loadFileContent] Trying to load 1 files from cache: [1]: "176962".
biodb.TRACE[2024-07-21 22:09:13.513][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 22:09:13.515][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/176962.xml".
biodb.DEBUG[2024-07-21 22:09:13.516][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-21 22:09:13.517][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-21 22:09:13.518][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-21 22:09:13.520][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:13.520][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:13.521][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:13.526][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:13.526][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:13.527][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:13.528][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:13.530][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:13.531][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:13.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.533][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:13.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:13.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.538][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 22:09:13.539][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 22:09:13.540][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.541][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.542][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 22:09:13.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 22:09:13.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.546][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 22:09:13.547][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 22:09:13.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.548][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.550][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 22:09:13.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 22:09:13.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.553][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 22:09:13.554][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 22:09:13.555][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.556][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.557][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 22:09:13.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 22:09:13.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.561][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 22:09:13.562][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 22:09:13.563][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.564][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.565][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 22:09:13.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 22:09:13.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.569][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:13.570][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:13.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.572][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.573][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 22:09:13.574][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:13.575][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.576][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.577][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 22:09:13.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:13.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.581][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:13.582][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:13.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.584][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.585][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:13.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:13.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.589][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:13.590][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:13.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.592][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.593][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:13.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:13.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.597][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 22:09:13.598][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 22:09:13.599][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.600][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.601][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 22:09:13.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 22:09:13.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.605][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 22:09:13.606][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 22:09:13.607][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.608][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.609][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 22:09:13.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 22:09:13.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.613][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:13.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:13.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.617][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:13.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:13.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.620][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:13.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:13.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.624][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:13.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:13.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.628][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:13.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:13.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:13.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:13.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:13.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:13.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:13.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:13.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.648][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:13.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:13.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:13.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:13.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:13.656][self$createEntryFromContent] Accession numbers: 176962.
biodb.TRACE[2024-07-21 22:09:13.657][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:13.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:13.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.661][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:13.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:13.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.665][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:13.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:13.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:13.669][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:13.670][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:13.670][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:13.675][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:13.676][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:13.676][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:13.677][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:13.678][private$loadEntries] Creating entries from ids [1]: "198655".
biodb.DEBUG[2024-07-21 22:09:13.679][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-21 22:09:13.681][cch$loadFileContent] Trying to load 1 files from cache: [1]: "198655".
biodb.TRACE[2024-07-21 22:09:13.682][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 22:09:13.684][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/198655.xml".
biodb.DEBUG[2024-07-21 22:09:13.685][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-21 22:09:13.686][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-21 22:09:13.687][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-21 22:09:13.688][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:13.689][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:13.690][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:13.694][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:13.695][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:13.696][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:13.697][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:13.699][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:13.700][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:13.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.702][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.703][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:13.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:13.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.707][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 22:09:13.708][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 22:09:13.709][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.710][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.711][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 22:09:13.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 22:09:13.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.715][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 22:09:13.716][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 22:09:13.717][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.718][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.719][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 22:09:13.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 22:09:13.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.723][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 22:09:13.724][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 22:09:13.725][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.726][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.727][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 22:09:13.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 22:09:13.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.731][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 22:09:13.732][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 22:09:13.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.733][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.735][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 22:09:13.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 22:09:13.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.738][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:13.739][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:13.740][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.741][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.742][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 22:09:13.743][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:13.744][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.745][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.746][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 22:09:13.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:13.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.750][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:13.751][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:13.752][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.753][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.754][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:13.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:13.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.758][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:13.759][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:13.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.761][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.762][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:13.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:13.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.766][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 22:09:13.767][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 22:09:13.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.769][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.770][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 22:09:13.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 22:09:13.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.774][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 22:09:13.775][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 22:09:13.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.777][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.778][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 22:09:13.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 22:09:13.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.782][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:13.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:13.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.786][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:13.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:13.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:13.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:13.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.793][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:13.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:13.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:13.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:13.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:13.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:13.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.805][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:13.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:13.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.809][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:13.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:13.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.812][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:13.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:13.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.822][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:13.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:13.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:13.826][self$createEntryFromContent] Accession numbers: 198655.
biodb.TRACE[2024-07-21 22:09:13.827][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:13.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:13.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.830][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:13.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:13.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.834][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:13.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:13.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:13.838][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:13.839][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:13.840][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:13.844][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:13.845][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:13.846][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:13.847][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:13.848][private$loadEntries] Creating entries from ids [1]: "215045".
biodb.DEBUG[2024-07-21 22:09:13.849][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-21 22:09:13.850][cch$loadFileContent] Trying to load 1 files from cache: [1]: "215045".
biodb.TRACE[2024-07-21 22:09:13.852][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 22:09:13.853][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/215045.xml".
biodb.DEBUG[2024-07-21 22:09:13.854][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-21 22:09:13.856][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-21 22:09:13.857][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-21 22:09:13.858][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:13.859][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:13.860][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:13.865][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:13.866][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:13.866][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:13.867][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:13.869][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:13.871][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:13.871][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.872][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:13.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:13.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.877][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 22:09:13.878][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 22:09:13.879][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.880][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.881][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 22:09:13.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 22:09:13.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.885][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 22:09:13.886][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 22:09:13.887][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.888][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.890][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 22:09:13.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 22:09:13.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.893][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 22:09:13.894][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 22:09:13.895][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.896][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.897][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 22:09:13.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 22:09:13.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.901][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 22:09:13.902][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 22:09:13.903][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.904][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.905][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 22:09:13.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 22:09:13.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.909][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:13.910][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:13.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.912][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.913][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 22:09:13.914][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:13.915][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.916][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.917][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 22:09:13.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:13.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.921][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:13.922][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:13.923][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.924][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.925][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:13.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:13.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.929][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:13.930][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:13.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.932][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.933][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:13.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:13.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.937][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 22:09:13.938][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 22:09:13.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.940][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.941][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 22:09:13.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 22:09:13.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.945][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 22:09:13.946][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 22:09:13.947][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.948][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.950][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 22:09:13.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 22:09:13.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.954][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:13.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:13.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.957][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:13.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:13.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.961][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:13.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:13.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.965][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:13.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:13.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:13.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:13.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:13.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:13.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.977][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:13.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:13.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.981][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:13.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:13.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.985][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:13.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:13.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:13.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:13.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:13.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:13.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:13.998][self$createEntryFromContent] Accession numbers: 215045.
biodb.TRACE[2024-07-21 22:09:13.999][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.003][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.007][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:14.028][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-21 22:09:14.031][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 22:09:14.033][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-07-21 22:09:14.034][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 22:09:14.036][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-07-21 22:09:14.039][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:14.039][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:14.040][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:14.045][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:14.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:14.046][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:14.047][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:14.048][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.052][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.056][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:14.059][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:14.060][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:14.061][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:14.065][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:14.066][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:14.067][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:14.068][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:14.069][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.073][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.077][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.080][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.084][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:14.088][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:14.089][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:14.090][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:14.094][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:14.095][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:14.096][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:14.097][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:14.098][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.102][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.106][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.110][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.113][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:14.117][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:14.118][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:14.119][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:14.123][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:14.124][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:14.125][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:14.126][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:14.127][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.131][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.135][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.139][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.142][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:14.146][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:14.147][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:14.148][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:14.152][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:14.153][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:14.154][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:14.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:14.156][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.160][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.163][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:14.173][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:14.173][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:14.174][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:14.179][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:14.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:14.181][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:14.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:14.182][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.186][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.190][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:14.194][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:14.195][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:14.196][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:14.200][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:14.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:14.202][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:14.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:14.204][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.208][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.211][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:14.215][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:14.216][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:14.217][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:14.221][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:14.222][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:14.223][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:14.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:14.225][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.229][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.232][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:14.236][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:14.237][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:14.238][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:14.242][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:14.243][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:14.244][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:14.245][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:14.246][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.250][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.254][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:14.257][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:14.258][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:14.259][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:14.263][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:14.264][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:14.265][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:14.266][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:14.267][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.271][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.275][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:14.279][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:14.279][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:14.280][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:14.285][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:14.286][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:14.286][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:14.287][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:14.288][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.292][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.296][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:14.300][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:14.301][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:14.302][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:14.306][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:14.307][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:14.308][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:14.309][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:14.310][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.314][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.317][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:14.321][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:14.322][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:14.323][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:14.327][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:14.328][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:14.329][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:14.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:14.331][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.335][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.345][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:14.349][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:14.350][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:14.351][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:14.355][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:14.356][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:14.357][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:14.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:14.359][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.363][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.367][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:14.370][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:14.371][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:14.372][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:14.376][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:14.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:14.378][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:14.379][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:14.380][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.384][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.388][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:14.391][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:14.392][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:14.393][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:14.398][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:14.399][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:14.399][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:14.400][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:14.401][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.405][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.409][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:14.413][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:14.414][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:14.414][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:14.419][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:14.420][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:14.421][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:14.422][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:14.423][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.427][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.430][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:14.434][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:14.435][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:14.436][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:14.440][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:14.441][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:14.442][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:14.443][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:14.444][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.448][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.452][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:14.456][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:14.457][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:14.458][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:14.462][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:14.463][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:14.464][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:14.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:14.466][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.470][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.474][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:14.478][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:14.479][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:14.480][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:14.485][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:14.486][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:14.487][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:14.487][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:14.489][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.493][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.496][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.519][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:14.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:14.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.523][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:14.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:14.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.527][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:14.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:14.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.531][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:14.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:14.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.535][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:14.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:14.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:14.564][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39124*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-21 22:09:14.568][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 22:09:14.569][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c5171beada848a87ef2ffa10427d9be3".
biodb.TRACE[2024-07-21 22:09:14.571][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 22:09:14.573][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/c5171beada848a87ef2ffa10427d9be3.content".
biodb.DEBUG[2024-07-21 22:09:14.577][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39125*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-21 22:09:14.582][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 22:09:14.585][cch$loadFileContent] Trying to load 1 files from cache: [1]: "750e63ff76a843f016511fa71c89113e".
biodb.TRACE[2024-07-21 22:09:14.587][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 22:09:14.589][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/750e63ff76a843f016511fa71c89113e.content".
biodb.DEBUG[2024-07-21 22:09:14.593][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:14.595][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:14.596][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:14.603][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:14.605][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:14.606][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:14.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:14.609][private$loadEntries] Creating entries from ids [1]: "4648".
biodb.DEBUG[2024-07-21 22:09:14.611][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-21 22:09:14.613][cch$loadFileContent] Trying to load 1 files from cache: [1]: "4648".
biodb.TRACE[2024-07-21 22:09:14.615][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 22:09:14.618][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/4648.xml".
biodb.DEBUG[2024-07-21 22:09:14.620][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-21 22:09:14.622][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-21 22:09:14.624][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-21 22:09:14.626][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:14.628][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:14.629][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:14.636][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:14.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:14.639][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:14.641][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:14.645][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:14.646][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:14.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.649][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:14.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:14.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.657][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 22:09:14.659][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 22:09:14.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.661][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.662][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 22:09:14.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 22:09:14.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.666][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 22:09:14.667][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 22:09:14.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.669][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.671][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 22:09:14.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 22:09:14.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.675][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 22:09:14.676][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 22:09:14.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.678][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.679][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 22:09:14.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 22:09:14.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.683][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 22:09:14.684][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 22:09:14.685][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.686][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.687][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 22:09:14.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 22:09:14.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.691][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:14.692][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:14.693][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.694][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.695][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:14.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:14.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.699][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 22:09:14.700][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.701][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.703][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 22:09:14.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.707][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:14.708][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:14.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.709][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.710][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:14.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:14.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.714][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:14.715][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:14.716][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.717][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.718][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:14.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:14.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.729][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 22:09:14.730][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 22:09:14.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.732][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.734][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 22:09:14.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 22:09:14.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.737][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 22:09:14.738][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 22:09:14.739][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.740][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.742][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 22:09:14.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 22:09:14.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.746][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:14.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:14.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.749][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:14.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:14.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.753][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:14.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:14.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.757][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:14.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:14.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:14.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:14.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:14.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:14.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.768][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:14.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:14.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:14.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:14.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.775][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:14.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:14.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:14.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:14.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:14.783][self$createEntryFromContent] Accession numbers: 4648.
biodb.TRACE[2024-07-21 22:09:14.784][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:14.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:14.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.788][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:14.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:14.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.792][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:14.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:14.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:14.795][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:14.796][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:14.797][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:14.801][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:14.802][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:14.803][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:14.804][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:14.805][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:14.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:14.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.808][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:14.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:14.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.812][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:14.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:14.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:14.816][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:14.817][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:14.817][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:14.822][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:14.822][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:14.823][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:14.824][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:14.825][private$loadEntries] Creating entries from ids [1]: "62447".
biodb.DEBUG[2024-07-21 22:09:14.826][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-21 22:09:14.828][cch$loadFileContent] Trying to load 1 files from cache: [1]: "62447".
biodb.TRACE[2024-07-21 22:09:14.829][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 22:09:14.830][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/62447.xml".
biodb.DEBUG[2024-07-21 22:09:14.831][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-21 22:09:14.832][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-21 22:09:14.834][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-21 22:09:14.835][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:14.836][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:14.837][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:14.841][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:14.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:14.843][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:14.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:14.846][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:14.847][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:14.848][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.849][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.850][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:14.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:14.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.854][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 22:09:14.855][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 22:09:14.856][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.857][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.858][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 22:09:14.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 22:09:14.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.862][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 22:09:14.863][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 22:09:14.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.865][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.866][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 22:09:14.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 22:09:14.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.870][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 22:09:14.871][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 22:09:14.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.873][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.874][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 22:09:14.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 22:09:14.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.878][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 22:09:14.879][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 22:09:14.879][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.880][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.882][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 22:09:14.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 22:09:14.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.885][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:14.886][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:14.887][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.888][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.889][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 22:09:14.890][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.897][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.898][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 22:09:14.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:14.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.902][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:14.903][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:14.904][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.905][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.906][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:14.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:14.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.910][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:14.911][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:14.912][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.913][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.914][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:14.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:14.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.918][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 22:09:14.919][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 22:09:14.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.921][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.922][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 22:09:14.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 22:09:14.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.926][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 22:09:14.927][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 22:09:14.928][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.929][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.930][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 22:09:14.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 22:09:14.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.934][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:14.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:14.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.937][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:14.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:14.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:14.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:14.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.945][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:14.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:14.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:14.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:14.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:14.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:14.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:14.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:14.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:14.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:14.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:14.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:14.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.968][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:14.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:14.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:14.972][self$createEntryFromContent] Accession numbers: 62447.
biodb.TRACE[2024-07-21 22:09:14.973][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:14.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:14.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.977][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:14.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:14.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:14.980][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:14.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:14.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:14.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:15.000][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-21 22:09:15.003][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 22:09:15.005][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-07-21 22:09:15.006][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 22:09:15.007][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-07-21 22:09:15.010][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:15.011][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:15.012][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:15.017][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:15.017][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:15.018][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:15.019][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:15.020][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.024][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.028][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:15.032][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:15.033][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:15.034][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:15.038][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:15.039][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:15.040][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:15.041][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:15.042][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.046][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.050][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.053][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.057][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:15.061][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:15.062][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:15.063][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:15.072][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:15.073][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:15.074][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:15.075][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:15.076][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.080][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.084][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.088][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.092][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:15.096][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:15.096][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:15.097][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:15.102][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:15.102][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:15.103][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:15.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:15.105][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.109][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.113][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.116][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.120][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:15.124][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:15.125][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:15.126][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:15.130][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:15.131][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:15.131][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:15.132][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:15.133][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.137][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.141][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:15.144][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:15.145][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:15.146][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:15.150][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:15.151][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:15.152][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:15.153][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:15.154][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.158][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.161][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:15.165][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:15.166][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:15.167][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:15.171][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:15.172][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:15.173][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:15.173][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:15.174][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.178][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.182][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:15.186][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:15.187][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:15.188][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:15.192][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:15.193][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:15.193][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:15.194][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:15.195][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.199][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.203][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:15.207][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:15.207][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:15.208][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:15.212][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:15.213][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:15.214][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:15.215][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:15.216][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.220][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.223][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:15.227][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:15.228][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:15.229][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:15.238][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:15.239][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:15.240][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:15.241][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:15.242][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.246][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.249][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:15.253][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:15.254][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:15.255][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:15.259][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:15.260][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:15.261][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:15.261][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:15.263][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.266][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.270][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:15.274][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:15.275][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:15.275][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:15.280][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:15.280][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:15.281][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:15.282][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:15.283][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.287][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.291][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:15.294][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:15.295][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:15.296][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:15.300][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:15.301][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:15.302][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:15.303][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:15.304][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.308][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.311][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:15.315][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:15.316][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:15.317][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:15.321][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:15.322][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:15.322][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:15.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:15.324][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.328][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.332][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:15.335][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:15.336][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:15.337][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:15.341][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:15.342][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:15.343][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:15.344][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:15.345][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.348][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.352][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:15.356][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:15.357][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:15.357][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:15.362][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:15.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:15.363][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:15.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:15.365][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.369][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.373][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:15.376][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:15.377][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:15.378][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:15.382][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:15.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:15.384][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:15.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:15.386][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.390][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.393][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:15.402][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:15.403][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:15.404][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:15.408][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:15.409][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:15.410][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:15.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:15.412][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.415][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.419][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:15.423][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:15.424][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:15.424][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:15.429][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:15.430][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:15.430][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:15.431][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:15.432][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.436][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.441][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:15.445][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:15.446][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:15.446][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:15.451][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:15.452][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:15.452][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:15.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:15.454][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.462][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.466][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:15.491][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=squalene&searchCategory=ALL NAMES&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-21 22:09:15.495][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 22:09:15.497][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9623d99e42a57d0f12e83910c2ffbf2".
biodb.TRACE[2024-07-21 22:09:15.498][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 22:09:15.499][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b9623d99e42a57d0f12e83910c2ffbf2.content".
biodb.DEBUG[2024-07-21 22:09:15.503][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:15.504][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:15.505][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:15.510][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:15.511][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:15.511][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:15.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:15.514][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.518][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.522][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:15.526][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:15.527][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:15.528][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:15.533][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:15.534][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:15.535][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:15.536][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:15.537][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.541][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.546][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.550][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.554][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:15.558][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:15.559][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:15.560][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:15.565][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:15.565][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:15.566][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:15.567][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:15.569][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.573][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.577][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.581][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.585][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:15.603][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:15.604][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:15.604][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:15.609][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:15.610][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:15.611][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:15.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:15.613][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.618][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.622][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.626][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.630][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:15.634][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:15.635][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:15.636][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:15.640][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:15.641][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:15.642][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:15.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:15.644][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.648][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.652][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:15.656][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:15.657][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:15.657][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:15.662][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:15.663][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:15.664][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:15.664][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:15.665][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.669][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.673][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:15.677][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:15.677][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:15.678][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:15.683][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:15.683][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:15.684][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:15.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:15.686][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.690][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.694][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:15.698][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:15.699][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:15.700][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:15.705][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:15.706][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:15.707][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:15.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:15.709][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.713][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.718][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:15.722][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:15.723][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:15.724][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:15.729][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:15.731][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:15.731][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:15.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:15.733][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.737][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.741][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:15.745][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:15.746][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:15.747][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:15.751][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:15.752][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:15.753][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:15.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:15.754][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.758][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.762][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:15.766][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:15.766][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:15.767][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:15.772][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:15.777][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:15.778][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:15.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:15.780][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.784][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.788][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:15.792][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:15.793][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:15.794][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:15.798][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:15.799][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:15.800][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:15.800][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:15.802][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.805][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.809][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:15.813][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:15.814][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:15.815][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:15.819][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:15.820][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:15.821][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:15.822][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:15.823][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.827][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.831][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:15.834][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:15.835][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:15.836][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:15.841][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:15.841][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:15.842][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:15.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:15.844][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.848][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.852][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:15.855][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:15.856][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:15.857][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:15.861][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:15.862][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:15.863][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:15.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:15.865][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.869][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.872][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:15.876][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:15.877][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:15.878][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:15.882][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:15.883][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:15.884][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:15.884][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:15.886][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.889][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.893][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:15.897][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:15.898][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:15.898][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:15.903][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:15.904][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:15.904][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:15.905][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:15.906][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.910][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.914][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:15.918][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:15.918][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:15.919][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:15.923][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:15.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:15.925][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:15.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:15.927][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.931][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.934][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:15.938][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:15.939][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:15.940][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:15.949][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:15.950][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:15.951][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:15.952][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:15.953][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.956][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.960][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:15.964][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:15.965][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:15.966][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:15.970][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:15.971][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:15.972][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:15.972][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:15.973][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.977][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.981][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:15.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:15.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:15.997][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-07-21 22:09:15.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-07-21 22:09:16.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-07-21 22:09:16.008][biodb::testThat]
biodb.INFO [2024-07-21 22:09:16.009][biodb::testThat] Running test function test_annotateMzValues_input_vector (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2024-07-21 22:09:16.010][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-21 22:09:16.011][biodb::testThat]
biodb.TRACE[2024-07-21 22:09:16.013][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-21 22:09:16.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-21 22:09:16.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.017][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:16.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:16.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.021][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:16.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:16.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.025][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:16.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:16.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.028][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:16.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:16.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:16.035][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:16.036][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:16.037][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:16.041][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:16.042][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:16.043][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:16.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:16.046][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-21 22:09:16.049][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 22:09:16.050][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-07-21 22:09:16.051][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 22:09:16.053][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-07-21 22:09:16.055][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:16.056][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:16.056][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:16.061][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:16.062][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:16.062][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:16.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:16.064][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:16.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:16.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.068][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:16.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:16.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.072][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:16.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:16.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:16.076][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-21 22:09:16.079][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 22:09:16.081][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-07-21 22:09:16.082][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 22:09:16.083][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-07-21 22:09:16.085][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:16.086][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:16.087][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:16.091][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:16.092][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:16.093][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:16.093][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:16.095][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:16.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:16.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.098][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:16.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:16.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.102][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:16.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:16.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:16.106][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:16.107][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:16.107][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:16.117][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:16.118][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:16.119][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:16.119][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:16.121][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:16.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:16.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.124][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:16.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:16.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.128][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:16.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:16.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:16.132][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-21 22:09:16.134][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:16.135][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:16.135][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:16.140][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:16.141][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:16.141][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:16.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:16.144][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.147][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.151][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:16.152][private$selectFields]
biodb.TRACE[2024-07-21 22:09:16.153][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-21 22:09:16.154][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-21 22:09:16.155][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:16.156][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.157][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.158][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.159][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.160][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.162][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.163][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:16.164][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:16.165][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.166][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.168][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.169][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-21 22:09:16.170][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.173][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.177][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.190][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2024-07-21 22:09:16.191][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:16.192][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:16.193][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:16.197][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:16.198][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:16.198][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:16.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:16.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.204][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.208][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:16.209][private$selectFields]
biodb.TRACE[2024-07-21 22:09:16.210][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-21 22:09:16.211][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-21 22:09:16.211][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:16.212][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.213][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.215][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.216][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.217][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.218][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.219][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.220][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:16.221][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:16.222][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.223][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.223][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.224][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.225][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-21 22:09:16.226][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.230][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.234][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.238][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-07-21 22:09:16.239][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:16.240][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:16.241][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:16.245][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:16.246][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:16.247][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:16.247][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:16.249][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.252][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.256][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:16.257][private$selectFields]
biodb.TRACE[2024-07-21 22:09:16.258][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-21 22:09:16.259][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-21 22:09:16.260][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:16.261][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.262][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.263][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.264][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.265][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.266][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.267][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.268][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:16.269][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:16.270][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.271][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.272][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.273][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-21 22:09:16.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.283][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.287][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.291][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2024-07-21 22:09:16.292][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-21 22:09:16.293][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-07-21 22:09:16.302][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:16.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:16.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.306][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:16.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:16.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.310][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:16.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:16.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.314][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:16.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:16.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:16.368][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:16.369][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:16.370][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:16.375][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:16.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:16.377][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:16.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:16.380][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-21 22:09:16.384][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 22:09:16.385][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-07-21 22:09:16.386][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 22:09:16.388][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-07-21 22:09:16.391][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-21 22:09:16.394][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 22:09:16.395][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-07-21 22:09:16.396][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 22:09:16.398][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-07-21 22:09:16.401][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:16.401][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:16.402][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:16.406][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:16.407][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:16.408][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:16.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:16.410][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:16.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:16.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.414][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:16.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:16.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.418][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:16.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:16.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:16.422][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:16.422][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:16.423][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:16.428][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:16.429][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:16.429][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:16.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:16.441][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:16.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:16.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.447][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:16.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:16.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.451][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:16.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:16.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:16.455][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:16.455][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:16.456][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:16.461][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:16.462][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:16.462][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:16.463][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:16.464][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:16.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:16.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.468][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:16.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:16.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.472][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:16.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:16.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:16.498][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-21 22:09:16.521][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:16.522][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:16.523][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:16.527][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:16.528][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:16.529][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:16.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:16.531][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.535][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.538][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:16.539][private$selectFields]
biodb.TRACE[2024-07-21 22:09:16.540][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-21 22:09:16.541][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-21 22:09:16.542][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:16.543][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.544][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.546][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.547][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.548][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.549][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.550][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.551][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:16.552][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:16.552][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.553][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.554][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.555][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.556][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-21 22:09:16.557][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.561][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.565][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.569][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-07-21 22:09:16.570][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:16.571][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:16.572][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:16.576][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:16.577][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:16.578][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:16.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:16.596][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.600][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.623][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:16.624][private$selectFields]
biodb.TRACE[2024-07-21 22:09:16.625][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-21 22:09:16.626][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-21 22:09:16.627][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:16.628][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.629][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.631][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.632][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.633][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.634][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.635][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.636][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:16.645][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:16.646][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.647][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.649][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.650][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-21 22:09:16.651][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.655][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.658][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.663][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-07-21 22:09:16.664][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:16.664][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:16.665][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:16.670][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:16.670][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:16.671][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:16.672][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:16.673][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.677][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.681][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:16.682][private$selectFields]
biodb.TRACE[2024-07-21 22:09:16.682][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-21 22:09:16.683][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-21 22:09:16.684][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:16.685][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.686][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.687][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.688][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.689][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.690][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.691][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.692][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.693][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:16.694][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:16.694][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.695][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.696][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.697][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.698][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-21 22:09:16.699][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.703][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.707][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.711][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-07-21 22:09:16.712][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-21 22:09:16.713][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-07-21 22:09:16.721][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-07-21 22:09:16.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-07-21 22:09:16.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-07-21 22:09:16.728][biodb::testThat]
biodb.INFO [2024-07-21 22:09:16.728][biodb::testThat] Running test function test_annotateMzValues_ppm_tol (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2024-07-21 22:09:16.729][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-21 22:09:16.730][biodb::testThat]
biodb.TRACE[2024-07-21 22:09:16.733][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-21 22:09:16.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-21 22:09:16.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.737][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:16.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:16.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.741][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:16.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:16.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.745][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:16.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:16.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.749][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:16.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:16.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:16.760][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:16.761][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:16.762][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:16.766][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:16.767][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:16.768][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:16.769][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:16.772][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-21 22:09:16.775][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 22:09:16.776][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-07-21 22:09:16.778][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 22:09:16.779][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-07-21 22:09:16.781][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:16.782][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:16.783][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:16.788][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:16.789][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:16.789][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:16.790][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:16.792][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:16.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:16.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.795][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:16.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:16.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.799][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:16.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:16.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:16.804][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-21 22:09:16.807][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 22:09:16.808][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-07-21 22:09:16.809][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 22:09:16.810][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-07-21 22:09:16.813][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:16.813][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:16.814][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:16.819][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:16.819][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:16.820][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:16.821][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:16.822][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:16.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:16.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.826][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:16.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:16.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.830][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:16.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:16.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:16.834][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:16.835][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:16.836][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:16.840][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:16.841][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:16.842][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:16.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:16.844][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:16.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:16.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.848][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:16.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:16.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.852][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:16.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:16.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:16.856][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-21 22:09:16.857][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:16.858][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:16.859][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:16.863][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:16.864][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:16.865][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:16.866][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:16.867][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.872][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.876][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:16.876][private$selectFields]
biodb.TRACE[2024-07-21 22:09:16.877][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-21 22:09:16.878][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-21 22:09:16.879][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:16.880][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.881][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.882][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.883][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.884][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.885][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.886][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.887][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.888][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:16.889][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:16.890][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.891][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.893][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.894][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-21 22:09:16.895][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.899][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.902][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.906][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2024-07-21 22:09:16.907][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:16.908][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:16.909][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:16.913][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:16.914][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:16.915][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:16.916][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:16.917][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.921][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.931][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:16.932][private$selectFields]
biodb.TRACE[2024-07-21 22:09:16.933][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-21 22:09:16.934][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-21 22:09:16.935][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:16.936][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.937][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.939][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.940][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.941][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.942][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.943][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.944][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:16.945][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:16.946][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.947][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.948][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.948][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.949][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-21 22:09:16.950][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.954][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.958][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.963][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-07-21 22:09:16.964][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:16.965][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:16.966][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:16.970][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:16.971][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:16.972][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:16.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:16.974][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.978][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.982][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:16.983][private$selectFields]
biodb.TRACE[2024-07-21 22:09:16.984][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-21 22:09:16.984][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-21 22:09:16.985][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:16.986][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.987][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.988][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.989][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.990][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.991][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.993][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.994][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:16.995][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:16.996][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.996][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:16.997][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:16.998][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:16.999][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-21 22:09:17.000][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.004][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.008][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.012][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2024-07-21 22:09:17.013][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-21 22:09:17.013][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-07-21 22:09:17.021][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:17.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:17.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.025][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:17.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:17.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.029][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:17.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:17.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.032][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:17.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:17.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:17.038][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:17.039][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:17.040][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:17.044][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:17.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:17.046][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:17.047][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:17.049][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-21 22:09:17.052][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 22:09:17.054][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-07-21 22:09:17.055][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 22:09:17.056][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-07-21 22:09:17.059][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-21 22:09:17.062][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 22:09:17.063][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-07-21 22:09:17.064][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 22:09:17.065][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-07-21 22:09:17.068][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:17.068][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:17.069][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:17.073][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:17.074][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:17.075][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:17.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:17.077][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:17.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:17.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.081][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:17.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:17.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.084][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:17.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:17.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:17.088][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:17.089][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:17.090][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:17.094][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:17.100][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:17.101][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:17.102][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:17.103][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:17.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:17.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.107][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:17.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:17.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.111][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:17.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:17.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:17.115][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:17.116][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:17.117][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:17.121][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:17.122][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:17.123][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:17.124][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:17.125][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:17.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:17.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.128][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:17.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:17.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.132][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:17.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:17.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:17.136][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-21 22:09:17.137][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:17.138][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:17.139][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:17.143][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:17.144][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:17.145][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:17.146][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:17.147][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.151][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.154][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:17.155][private$selectFields]
biodb.TRACE[2024-07-21 22:09:17.156][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-21 22:09:17.157][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-21 22:09:17.158][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:17.159][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.160][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.162][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.163][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.164][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.165][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.166][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:17.167][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:17.168][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.169][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.171][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.172][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-21 22:09:17.173][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.176][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.180][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.184][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-07-21 22:09:17.185][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:17.186][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:17.187][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:17.191][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:17.192][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:17.193][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:17.193][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:17.195][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.198][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.202][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:17.203][private$selectFields]
biodb.TRACE[2024-07-21 22:09:17.204][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-21 22:09:17.205][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-21 22:09:17.205][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:17.206][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.207][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.208][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.209][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.210][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.211][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.213][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.214][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:17.215][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:17.216][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.217][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.218][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.219][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.220][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-21 22:09:17.221][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.224][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.228][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.232][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-07-21 22:09:17.233][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:17.234][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:17.235][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:17.239][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:17.240][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:17.241][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:17.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:17.243][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.246][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.250][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:17.251][private$selectFields]
biodb.TRACE[2024-07-21 22:09:17.252][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-21 22:09:17.253][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-21 22:09:17.254][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:17.255][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.256][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.257][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.258][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.259][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.260][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.265][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.266][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.267][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:17.268][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:17.269][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.270][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.271][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.272][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.273][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-21 22:09:17.274][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.278][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.282][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.286][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-07-21 22:09:17.287][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-21 22:09:17.288][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-07-21 22:09:17.295][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-07-21 22:09:17.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-07-21 22:09:17.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-07-21 22:09:17.302][biodb::testThat]
biodb.INFO [2024-07-21 22:09:17.303][biodb::testThat] Running test function test_annotateMzValues_input_dataframe_untouched (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2024-07-21 22:09:17.304][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-21 22:09:17.305][biodb::testThat]
biodb.TRACE[2024-07-21 22:09:17.307][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-21 22:09:17.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-21 22:09:17.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.311][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:17.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:17.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.315][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:17.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:17.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.319][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:17.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:17.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.322][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:17.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:17.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:17.330][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:17.331][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:17.332][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:17.336][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:17.337][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:17.337][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:17.338][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:17.341][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.72*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-21 22:09:17.344][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 22:09:17.345][cch$loadFileContent] Trying to load 1 files from cache: [1]: "dabc9e8530050c4ceebbaec76743bcf1".
biodb.TRACE[2024-07-21 22:09:17.347][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 22:09:17.348][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/dabc9e8530050c4ceebbaec76743bcf1.content".
biodb.DEBUG[2024-07-21 22:09:17.350][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:17.351][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:17.352][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:17.356][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:17.357][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:17.358][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:17.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:17.360][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:17.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:17.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.364][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:17.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:17.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.368][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:17.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:17.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:17.372][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.73*&searchCategory=MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-21 22:09:17.375][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 22:09:17.376][cch$loadFileContent] Trying to load 1 files from cache: [1]: "41b7f9723242a79cfe14bebd91dbb5b6".
biodb.TRACE[2024-07-21 22:09:17.377][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 22:09:17.379][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/41b7f9723242a79cfe14bebd91dbb5b6.content".
biodb.DEBUG[2024-07-21 22:09:17.381][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:17.382][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:17.383][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:17.387][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:17.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:17.389][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:17.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:17.391][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:17.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:17.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.394][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:17.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:17.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.398][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:17.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:17.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:17.402][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:17.403][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:17.403][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:17.408][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:17.409][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:17.409][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:17.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:17.411][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:17.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:17.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.415][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:17.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:17.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.419][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:17.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:17.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:17.422][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-21 22:09:17.424][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:17.425][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:17.426][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:17.430][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:17.436][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:17.437][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:17.437][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:17.439][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.443][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.446][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:17.447][private$selectFields]
biodb.TRACE[2024-07-21 22:09:17.448][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-21 22:09:17.449][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-21 22:09:17.450][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:17.451][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.452][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.453][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.454][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.455][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.456][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.457][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.457][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.458][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:17.459][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:17.460][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.461][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.462][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.463][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.464][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-21 22:09:17.465][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.469][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.472][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.476][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [192288].
biodb.DEBUG[2024-07-21 22:09:17.477][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:17.478][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:17.479][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:17.484][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:17.484][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:17.485][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:17.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:17.487][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.491][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.495][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:17.496][private$selectFields]
biodb.TRACE[2024-07-21 22:09:17.497][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-21 22:09:17.498][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-21 22:09:17.498][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:17.499][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.500][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.501][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.502][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.503][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.504][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.506][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.507][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:17.508][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:17.509][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.510][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.511][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.512][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.513][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-21 22:09:17.514][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.517][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.521][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.525][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-07-21 22:09:17.526][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:17.527][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:17.528][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:17.532][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:17.533][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:17.534][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:17.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:17.536][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.540][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.543][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:17.544][private$selectFields]
biodb.TRACE[2024-07-21 22:09:17.545][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-21 22:09:17.546][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-21 22:09:17.547][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:17.548][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.549][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.551][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.552][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.553][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.554][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.554][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.555][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:17.556][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:17.557][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.558][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.560][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.561][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-21 22:09:17.562][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.566][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.569][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.574][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [209892].
biodb.DEBUG[2024-07-21 22:09:17.574][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-21 22:09:17.575][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-07-21 22:09:17.592][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:17.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:17.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.601][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:17.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:17.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.605][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:17.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:17.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.609][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:17.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:17.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:17.616][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:17.617][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:17.618][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:17.622][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:17.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:17.624][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:17.625][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:17.627][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.38*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-21 22:09:17.630][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 22:09:17.632][cch$loadFileContent] Trying to load 1 files from cache: [1]: "49f51d93ac229648aa454636918ce386".
biodb.TRACE[2024-07-21 22:09:17.633][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 22:09:17.634][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/49f51d93ac229648aa454636918ce386.content".
biodb.DEBUG[2024-07-21 22:09:17.637][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=410.39*&searchCategory=MONOISOTOPIC MASS&maximumResults=0&starsCategory=ALL".
biodb.DEBUG[2024-07-21 22:09:17.640][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 22:09:17.641][cch$loadFileContent] Trying to load 1 files from cache: [1]: "121ea95906eb67bed88948c362686e4f".
biodb.TRACE[2024-07-21 22:09:17.642][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 22:09:17.644][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/121ea95906eb67bed88948c362686e4f.content".
biodb.DEBUG[2024-07-21 22:09:17.646][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:17.647][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:17.648][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:17.652][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:17.653][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:17.654][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:17.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:17.656][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:17.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:17.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.659][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:17.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:17.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.663][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:17.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:17.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:17.667][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:17.668][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:17.669][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:17.673][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:17.674][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:17.674][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:17.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:17.676][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:17.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:17.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.680][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:17.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:17.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.684][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:17.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:17.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:17.688][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:17.689][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:17.690][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:17.694][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:17.695][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:17.696][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:17.697][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:17.698][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:17.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:17.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.702][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:17.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:17.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.706][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:17.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:17.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:17.710][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-21 22:09:17.711][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:17.712][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:17.713][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:17.717][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:17.718][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:17.719][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:17.720][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:17.721][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.725][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.729][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:17.730][private$selectFields]
biodb.TRACE[2024-07-21 22:09:17.731][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-21 22:09:17.732][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-21 22:09:17.732][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:17.733][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.734][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.735][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.736][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.737][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.738][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.739][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.740][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.741][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:17.742][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:17.743][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.744][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.745][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.746][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.746][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-21 22:09:17.748][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.751][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.755][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.759][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [4648].
biodb.DEBUG[2024-07-21 22:09:17.760][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:17.761][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:17.762][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:17.772][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:17.773][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:17.774][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:17.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:17.776][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.780][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.784][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:17.785][private$selectFields]
biodb.TRACE[2024-07-21 22:09:17.786][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-21 22:09:17.787][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-21 22:09:17.788][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:17.789][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.790][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.791][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.792][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.793][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.794][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.795][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.796][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:17.797][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:17.798][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.799][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.801][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.802][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-21 22:09:17.803][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.807][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.811][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.815][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [15440].
biodb.DEBUG[2024-07-21 22:09:17.816][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:17.817][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:17.818][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:17.823][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:17.823][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:17.824][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:17.825][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:17.826][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.830][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.834][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:17.835][private$selectFields]
biodb.TRACE[2024-07-21 22:09:17.836][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-21 22:09:17.837][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-21 22:09:17.838][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:17.839][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.840][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.841][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.842][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.843][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.844][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.845][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.845][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.846][private$selectFields] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:17.847][private$organizeFieldsByGroups] Fields [1]: "chebi.id"
biodb.TRACE[2024-07-21 22:09:17.848][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.849][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.850][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.851][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.852][private$organizeFieldsByGroups] Groups [2]: "chebi.id, list()"
biodb.TRACE[2024-07-21 22:09:17.853][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.857][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.861][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.865][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [chebi.id] [62447].
biodb.DEBUG[2024-07-21 22:09:17.866][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-21 22:09:17.867][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-07-21 22:09:17.886][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-07-21 22:09:17.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-07-21 22:09:17.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-07-21 22:09:17.893][biodb::testThat]
biodb.INFO [2024-07-21 22:09:17.894][biodb::testThat] Running test function test.wrong.entry (" Wrong entry gives NULL ").
biodb.INFO [2024-07-21 22:09:17.895][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-21 22:09:17.896][biodb::testThat]
biodb.DEBUG[2024-07-21 22:09:17.897][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2024-07-21 22:09:17.898][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-21 22:09:17.900][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2024-07-21 22:09:17.902][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 22:09:17.903][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/WRONGA.xml".
biodb.DEBUG[2024-07-21 22:09:17.904][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-21 22:09:17.905][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-21 22:09:17.907][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-21 22:09:17.908][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:17.909][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:17.910][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:17.915][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:17.916][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:17.917][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:17.917][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:17.920][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:17.921][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:17.922][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.923][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:17.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:17.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.928][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 22:09:17.929][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 22:09:17.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.931][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.932][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 22:09:17.933][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 22:09:17.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.935][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.936][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 22:09:17.937][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 22:09:17.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.939][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.941][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 22:09:17.947][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 22:09:17.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.950][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.951][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:17.952][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:17.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.954][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.955][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 22:09:17.956][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:17.957][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.958][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.959][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:17.960][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:17.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.962][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.964][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:17.965][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:17.966][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.967][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.968][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 22:09:17.969][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 22:09:17.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.971][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.972][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 22:09:17.973][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 22:09:17.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.975][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.976][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.980][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:17.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:17.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.988][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:17.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.991][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:17.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:17.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.995][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:17.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:17.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:17.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:17.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:18.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:18.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:18.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:18.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.006][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:18.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:18.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.010][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:18.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:18.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:18.014][self$createEntryFromContent] Accession numbers: .
biodb.DEBUG[2024-07-21 22:09:18.015][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2024-07-21 22:09:18.022][biodb::testThat]
biodb.INFO [2024-07-21 22:09:18.023][biodb::testThat] Running test function test.wrong.entry.among.good.ones (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2024-07-21 22:09:18.023][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-21 22:09:18.024][biodb::testThat]
biodb.DEBUG[2024-07-21 22:09:18.033][function(conn, opt)] IDS: [4]: "WRONGB, 15440, 2528, 7799"
biodb.DEBUG[2024-07-21 22:09:18.034][private$loadEntries] Creating entries from ids [3]: "WRONGB, 2528, 7799".
biodb.DEBUG[2024-07-21 22:09:18.035][conn$getEntryContent] Get ChEBI entry content(s) for 3 id(s)...
biodb.TRACE[2024-07-21 22:09:18.036][cch$loadFileContent] Trying to load 3 files from cache: [3]: "WRONGB, 2528, 7799".
biodb.TRACE[2024-07-21 22:09:18.038][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2024-07-21 22:09:18.040][loadFileContents] Loaded 3 files from cache: [3]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/WRONGB.xml, /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2528.xml, /home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7799.xml".
biodb.DEBUG[2024-07-21 22:09:18.041][conn$getEntryContent] 3 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-21 22:09:18.042][self$createEntryFromContent] Creating ChEBI entries from 3 content(s).
biodb.DEBUG[2024-07-21 22:09:18.043][self$createEntryFromContent] Parsing 3 ChEBI entries.
biodb.DEBUG[2024-07-21 22:09:18.045][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:18.046][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:18.046][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:18.051][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:18.052][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:18.053][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:18.053][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:18.056][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:18.057][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:18.058][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.059][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:18.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:18.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.064][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 22:09:18.065][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 22:09:18.066][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.067][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.068][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 22:09:18.069][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 22:09:18.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.071][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.072][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 22:09:18.073][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 22:09:18.074][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.075][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.076][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 22:09:18.077][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 22:09:18.078][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.079][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.080][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:18.081][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:18.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.083][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.084][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 22:09:18.085][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:18.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.086][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.088][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:18.089][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:18.089][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.090][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.091][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:18.092][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:18.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.094][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.096][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 22:09:18.096][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 22:09:18.097][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.098][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.099][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 22:09:18.100][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 22:09:18.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.102][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.103][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:18.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:18.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.107][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:18.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:18.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:18.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:18.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.121][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:18.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:18.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.125][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:18.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:18.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:18.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:18.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.132][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:18.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:18.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:18.136][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:18.137][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:18.138][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:18.142][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:18.143][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:18.144][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:18.145][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:18.147][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:18.148][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:18.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.150][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:18.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:18.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.155][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 22:09:18.156][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 22:09:18.156][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.157][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.159][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 22:09:18.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 22:09:18.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.162][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 22:09:18.163][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 22:09:18.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.165][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.167][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 22:09:18.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 22:09:18.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.170][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 22:09:18.171][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 22:09:18.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.173][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.174][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 22:09:18.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 22:09:18.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.178][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 22:09:18.179][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 22:09:18.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.181][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.182][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 22:09:18.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 22:09:18.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.186][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:18.187][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:18.188][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.189][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.190][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:18.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:18.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.194][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 22:09:18.195][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:18.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.197][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.198][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 22:09:18.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:18.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.202][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:18.203][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:18.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.205][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.206][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:18.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:18.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.210][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:18.211][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:18.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.213][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.214][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:18.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:18.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.218][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 22:09:18.219][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 22:09:18.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.221][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.222][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 22:09:18.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 22:09:18.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.226][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 22:09:18.227][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 22:09:18.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.229][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.230][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 22:09:18.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 22:09:18.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.234][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:18.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:18.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.238][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:18.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:18.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:18.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:18.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.245][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:18.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:18.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.249][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:18.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:18.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.252][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:18.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:18.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:18.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:18.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:18.260][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:18.261][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:18.262][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:18.266][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:18.267][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:18.268][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:18.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:18.271][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:18.272][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:18.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.273][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:18.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:18.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.283][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 22:09:18.284][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 22:09:18.285][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.286][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.288][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 22:09:18.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 22:09:18.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.292][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 22:09:18.293][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 22:09:18.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.294][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.296][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 22:09:18.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 22:09:18.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.299][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 22:09:18.300][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 22:09:18.301][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.302][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.303][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 22:09:18.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 22:09:18.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.307][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 22:09:18.308][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 22:09:18.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.310][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.311][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 22:09:18.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 22:09:18.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.315][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:18.316][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:18.317][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.318][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.319][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:18.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:18.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.323][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 22:09:18.326][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:18.328][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.329][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.331][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 22:09:18.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:18.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.335][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:18.337][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:18.338][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.339][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.340][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:18.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:18.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.344][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:18.345][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:18.346][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.347][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.349][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:18.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:18.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.353][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 22:09:18.354][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 22:09:18.355][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.356][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.357][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 22:09:18.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 22:09:18.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.361][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 22:09:18.362][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 22:09:18.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.364][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.366][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 22:09:18.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 22:09:18.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.370][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:18.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:18.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.374][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:18.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:18.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.378][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:18.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:18.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.382][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:18.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:18.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.386][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:18.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:18.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:18.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:18.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:18.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:18.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:18.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:18.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:18.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:18.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:18.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:18.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:18.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:18.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:18.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:18.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:18.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:18.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:18.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:18.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:18.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:18.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:18.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:18.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:18.436][self$createEntryFromContent] Accession numbers: , 2528, 7799.
biodb.DEBUG[2024-07-21 22:09:18.437][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2024-07-21 22:09:18.438][function(conn, opt)] Entries: [4]: "NULL, <environment>, <environment>, <environment>"
biodb.INFO [2024-07-21 22:09:18.452][biodb::testThat]
biodb.INFO [2024-07-21 22:09:18.453][biodb::testThat] Running test function test.peak.table (" The peak table is correct. ").
biodb.INFO [2024-07-21 22:09:18.454][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-21 22:09:18.455][biodb::testThat]
biodb.INFO [2024-07-21 22:09:18.496][biodb::testThat]
biodb.INFO [2024-07-21 22:09:18.497][biodb::testThat] Running test function test.nb.entries (" Nb entries is positive. ").
biodb.INFO [2024-07-21 22:09:18.498][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-21 22:09:18.499][biodb::testThat]
biodb.INFO [2024-07-21 22:09:18.507][biodb::testThat]
biodb.INFO [2024-07-21 22:09:18.508][biodb::testThat] Running test function test.entry.ids (" We can get a list of entry ids. ").
biodb.INFO [2024-07-21 22:09:18.509][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-21 22:09:18.510][biodb::testThat]
biodb.DEBUG[2024-07-21 22:09:18.513][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=1*&searchCategory=CHEBI ID&maximumResults=100&starsCategory=ALL".
biodb.DEBUG[2024-07-21 22:09:18.516][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 22:09:18.518][cch$loadFileContent] Trying to load 1 files from cache: [1]: "aed2cd6d5d221333c0a30a9f8dbc41b4".
biodb.TRACE[2024-07-21 22:09:18.519][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 22:09:18.521][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/aed2cd6d5d221333c0a30a9f8dbc41b4.content".
biodb.TRACE[2024-07-21 22:09:18.531][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:18.533][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:18.534][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.534][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:18.535][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:18.536][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:18.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:18.538][ef$get] fields variable is a list.
biodb.INFO [2024-07-21 22:09:18.540][biodb::testThat]
biodb.INFO [2024-07-21 22:09:18.540][biodb::testThat] Running test function test.annotateMzValues (" annotateMzValues() works correctly. ").
biodb.INFO [2024-07-21 22:09:18.541][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-21 22:09:18.542][biodb::testThat]
biodb.ERROR[2024-07-21 22:09:18.555][conn$annotateMzValues] No column named "mz" was found inside data frame.
biodb.ERROR[2024-07-21 22:09:18.571][ef$checkIsDefined] Field(s) "foo" is/are not defined.
biodb.INFO [2024-07-21 22:09:18.584][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-07-21 22:09:18.586][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2024-07-21 22:09:18.587][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2024-07-21 22:09:18.588][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-07-21 22:09:18.588][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:18.589][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:18.590][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:18.591][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:18.592][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:18.593][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-07-21 22:09:18.602][biodb::testContext]
biodb.INFO [2024-07-21 22:09:18.603][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-21 22:09:18.604][biodb::testContext] Test context - Test conversions
biodb.INFO [2024-07-21 22:09:18.605][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-21 22:09:18.606][biodb::testContext]
biodb.INFO [2024-07-21 22:09:18.608][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.12.0.
biodb.DEBUG[2024-07-21 22:09:18.609][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.19-bioc/R/site-library/biodb/definitions.yml".
biodb.DEBUG[2024-07-21 22:09:18.613][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-21 22:09:18.614][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-07-21 22:09:18.615][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-07-21 22:09:18.616][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:18.617][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:18.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:18.618][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-07-21 22:09:18.619][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-07-21 22:09:18.620][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:18.621][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:18.622][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:18.623][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-07-21 22:09:18.624][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-07-21 22:09:18.625][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:18.625][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:18.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:18.627][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-07-21 22:09:18.628][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-07-21 22:09:18.629][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-07-21 22:09:18.630][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:18.631][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:18.632][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:18.633][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-07-21 22:09:18.633][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-07-21 22:09:18.634][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-07-21 22:09:18.635][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:18.636][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:18.637][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:18.638][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-07-21 22:09:18.639][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-07-21 22:09:18.640][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:18.640][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:18.641][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:18.648][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-07-21 22:09:18.649][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-07-21 22:09:18.650][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-07-21 22:09:18.651][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:18.652][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:18.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:18.654][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-07-21 22:09:18.655][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-07-21 22:09:18.656][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:18.657][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:18.657][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:18.658][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-07-21 22:09:18.659][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-07-21 22:09:18.660][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-07-21 22:09:18.661][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:18.662][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:18.663][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:18.664][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-07-21 22:09:18.665][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-07-21 22:09:18.666][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-07-21 22:09:18.667][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-07-21 22:09:18.668][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-07-21 22:09:18.669][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-07-21 22:09:18.669][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:18.670][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:18.671][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:18.672][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-07-21 22:09:18.673][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-07-21 22:09:18.674][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:18.675][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:18.676][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:18.676][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-07-21 22:09:18.677][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-07-21 22:09:18.678][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:18.679][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:18.680][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:18.681][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-07-21 22:09:18.682][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-07-21 22:09:18.683][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:18.683][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:18.684][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:18.685][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-07-21 22:09:18.686][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-07-21 22:09:18.687][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:18.688][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:18.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:18.690][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-07-21 22:09:18.691][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-07-21 22:09:18.691][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:18.692][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:18.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:18.694][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-07-21 22:09:18.695][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-07-21 22:09:18.698][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-07-21 22:09:18.699][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:18.700][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:18.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:18.701][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-07-21 22:09:18.702][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-07-21 22:09:18.703][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-07-21 22:09:18.704][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:18.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:18.706][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:18.707][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-07-21 22:09:18.709][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-21 22:09:18.724][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-07-21 22:09:18.725][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:18.726][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-21 22:09:18.727][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:18.728][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-21 22:09:18.729][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-21 22:09:18.730][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-21 22:09:18.731][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-21 22:09:18.732][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-21 22:09:18.732][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:18.733][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-07-21 22:09:18.734][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-21 22:09:18.735][self$setPropertyValue]
biodb.DEBUG[2024-07-21 22:09:18.736][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:18.737][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-21 22:09:18.737][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-21 22:09:18.737][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-21 22:09:18.737][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-21 22:09:18.737][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-21 22:09:18.738][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-21 22:09:18.739][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 22:09:18.740][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 22:09:18.741][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-21 22:09:18.742][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 22:09:18.743][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 22:09:18.743][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-21 22:09:18.744][self$setPropertyValue]
biodb.DEBUG[2024-07-21 22:09:18.745][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-21 22:09:18.746][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-21 22:09:18.747][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-21 22:09:18.748][self$setPropertyValue]
biodb.DEBUG[2024-07-21 22:09:18.749][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-07-21 22:09:18.751][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-21 22:09:18.752][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-07-21 22:09:18.753][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:18.754][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-21 22:09:18.754][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:18.755][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-21 22:09:18.756][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-21 22:09:18.757][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-21 22:09:18.758][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-21 22:09:18.759][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-21 22:09:18.760][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:18.761][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-07-21 22:09:18.762][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-21 22:09:18.763][self$setPropertyValue]
biodb.DEBUG[2024-07-21 22:09:18.764][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:18.765][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-21 22:09:18.765][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-21 22:09:18.765][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-21 22:09:18.765][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-21 22:09:18.765][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-21 22:09:18.766][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-21 22:09:18.767][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 22:09:18.768][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 22:09:18.769][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-21 22:09:18.770][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 22:09:18.770][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 22:09:18.771][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-21 22:09:18.772][self$setPropertyValue]
biodb.DEBUG[2024-07-21 22:09:18.773][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-21 22:09:18.774][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-21 22:09:18.775][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-21 22:09:18.776][self$setPropertyValue]
biodb.DEBUG[2024-07-21 22:09:18.777][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-07-21 22:09:18.779][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:18.780][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-07-21 22:09:18.781][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:18.781][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-21 22:09:18.782][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:18.783][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-21 22:09:18.784][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-21 22:09:18.785][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-21 22:09:18.786][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-21 22:09:18.787][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-21 22:09:18.788][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-21 22:09:18.789][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-07-21 22:09:18.790][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-21 22:09:18.791][self$setPropertyValue]
biodb.DEBUG[2024-07-21 22:09:18.792][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:18.793][self$setPropertyValue]
biodb.DEBUG[2024-07-21 22:09:18.794][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-21 22:09:18.795][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 22:09:18.796][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 22:09:18.796][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-21 22:09:18.797][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 22:09:18.798][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 22:09:18.799][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-21 22:09:18.800][self$setPropertyValue]
biodb.DEBUG[2024-07-21 22:09:18.806][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-21 22:09:18.807][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-21 22:09:18.808][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-21 22:09:18.810][self$setPropertyValue]
biodb.DEBUG[2024-07-21 22:09:18.811][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-07-21 22:09:18.812][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:18.813][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-07-21 22:09:18.814][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:18.815][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-21 22:09:18.816][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:18.817][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-21 22:09:18.818][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-21 22:09:18.819][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-21 22:09:18.820][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-21 22:09:18.821][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-21 22:09:18.822][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-21 22:09:18.823][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-07-21 22:09:18.824][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-21 22:09:18.825][self$setPropertyValue]
biodb.DEBUG[2024-07-21 22:09:18.826][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:18.827][self$setPropertyValue]
biodb.DEBUG[2024-07-21 22:09:18.828][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-21 22:09:18.829][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 22:09:18.830][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 22:09:18.830][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-21 22:09:18.831][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 22:09:18.832][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 22:09:18.833][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-21 22:09:18.834][self$setPropertyValue]
biodb.DEBUG[2024-07-21 22:09:18.835][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-21 22:09:18.836][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-21 22:09:18.837][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-21 22:09:18.838][self$setPropertyValue]
biodb.DEBUG[2024-07-21 22:09:18.839][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-21 22:09:18.840][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:18.841][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:18.841][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:18.842][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:18.843][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:18.844][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:18.845][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:18.846][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:18.847][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:18.847][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:18.848][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:18.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:18.850][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:18.851][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:18.852][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:18.852][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:18.853][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:18.854][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:18.855][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:18.856][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:18.857][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:18.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:18.858][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:18.859][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:18.860][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:18.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:18.862][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:18.863][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:18.863][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:18.864][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:18.865][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:18.866][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:18.867][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:18.868][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:18.868][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:18.869][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:18.870][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:18.871][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:18.872][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:18.873][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:18.873][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:18.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:18.875][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:18.876][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:18.877][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:18.878][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:18.878][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:18.879][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:18.880][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:18.881][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:18.882][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:18.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:18.883][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:18.884][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:18.885][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:18.886][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:18.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:18.888][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:18.888][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:18.889][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:18.890][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:18.891][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:18.892][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:18.893][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:18.893][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:18.894][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:18.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:18.896][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:18.897][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:18.898][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:18.898][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:18.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:18.900][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:18.901][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:18.902][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:18.903][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:18.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:18.904][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:18.905][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:18.906][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:18.907][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:18.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:18.909][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:18.909][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:18.910][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:18.911][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:18.912][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:18.913][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-07-21 22:09:18.914][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-07-21 22:09:18.916][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-07-21 22:09:18.917][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-07-21 22:09:18.919][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-07-21 22:09:18.920][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-07-21 22:09:18.921][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-07-21 22:09:18.922][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-07-21 22:09:18.924][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-07-21 22:09:18.925][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-07-21 22:09:18.926][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-21 22:09:18.928][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-07-21 22:09:18.929][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-07-21 22:09:18.930][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-07-21 22:09:18.931][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-07-21 22:09:18.933][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-07-21 22:09:18.934][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-07-21 22:09:18.935][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-07-21 22:09:18.937][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-07-21 22:09:18.938][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-07-21 22:09:18.939][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-07-21 22:09:18.941][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-07-21 22:09:18.942][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-07-21 22:09:18.943][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-07-21 22:09:18.944][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-07-21 22:09:18.946][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-07-21 22:09:18.947][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-07-21 22:09:18.948][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-07-21 22:09:18.950][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-07-21 22:09:18.951][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-07-21 22:09:18.952][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-07-21 22:09:18.953][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-07-21 22:09:18.955][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-07-21 22:09:18.956][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-07-21 22:09:18.963][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-07-21 22:09:18.964][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-07-21 22:09:18.966][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-07-21 22:09:18.967][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-07-21 22:09:18.968][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-07-21 22:09:18.970][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-07-21 22:09:18.971][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-07-21 22:09:18.973][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-07-21 22:09:18.974][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-07-21 22:09:18.975][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-07-21 22:09:18.977][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-07-21 22:09:18.978][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-07-21 22:09:18.979][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-07-21 22:09:18.981][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-07-21 22:09:18.982][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-07-21 22:09:18.983][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-07-21 22:09:18.985][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-07-21 22:09:18.986][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-07-21 22:09:18.987][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-07-21 22:09:18.989][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-07-21 22:09:18.990][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-07-21 22:09:18.991][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-07-21 22:09:18.993][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-07-21 22:09:18.994][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-07-21 22:09:18.995][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-07-21 22:09:18.997][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-07-21 22:09:18.998][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-07-21 22:09:18.999][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-07-21 22:09:19.000][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-07-21 22:09:19.002][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-07-21 22:09:19.003][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-07-21 22:09:19.004][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-07-21 22:09:19.006][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-07-21 22:09:19.007][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-07-21 22:09:19.008][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-07-21 22:09:19.010][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-07-21 22:09:19.011][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-07-21 22:09:19.012][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-07-21 22:09:19.013][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-07-21 22:09:19.015][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-07-21 22:09:19.016][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-07-21 22:09:19.017][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-07-21 22:09:19.019][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-07-21 22:09:19.020][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-07-21 22:09:19.021][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-07-21 22:09:19.022][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-07-21 22:09:19.024][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-07-21 22:09:19.025][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-07-21 22:09:19.026][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-07-21 22:09:19.028][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-07-21 22:09:19.029][initialize] This is biodb version 1.12.0.
biodb.DEBUG[2024-07-21 22:09:19.030][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-21 22:09:19.031][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:19.032][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:19.033][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:19.034][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:19.035][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:19.036][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:19.037][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:19.038][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:19.038][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.039][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:19.040][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:19.041][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:19.042][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:19.043][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:19.043][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:19.044][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:19.046][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:19.047][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:19.048][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:19.048][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:19.049][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:19.050][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.051][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:19.052][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:19.053][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:19.053][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:19.054][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:19.055][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:19.056][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.057][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:19.058][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:19.059][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:19.059][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:19.060][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:19.061][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:19.062][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:19.064][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:19.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:19.065][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:19.066][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:19.067][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:19.068][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:19.069][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:19.070][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:19.071][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:19.072][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:19.073][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:19.074][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:19.075][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:19.076][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:19.077][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:19.078][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:19.079][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:19.080][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.080][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:19.081][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:19.082][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:19.083][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:19.084][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:19.085][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:19.085][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:19.087][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:19.088][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:19.089][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:19.090][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:19.090][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:19.091][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.092][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:19.093][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:19.094][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:19.095][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:19.095][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:19.096][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:19.097][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.098][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:19.099][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:19.100][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:19.100][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:19.101][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:19.102][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:19.103][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:19.105][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:19.105][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:19.106][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:19.107][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:19.108][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:19.109][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.110][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:19.110][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:19.111][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:19.112][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:19.118][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:19.119][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:19.120][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.121][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:19.122][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:19.123][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:19.124][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:19.125][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:19.126][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:19.127][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.127][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:19.128][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:19.129][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:19.130][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:19.131][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:19.132][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:19.133][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.133][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:19.134][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:19.135][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:19.136][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:19.137][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:19.138][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:19.138][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.139][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:19.142][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.19-bioc/R/site-library/biodbChebi/definitions.yml".
biodb.DEBUG[2024-07-21 22:09:19.143][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2024-07-21 22:09:19.145][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-21 22:09:19.146][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-07-21 22:09:19.147][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:19.148][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-21 22:09:19.149][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:19.150][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-21 22:09:19.151][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:19.152][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2024-07-21 22:09:19.153][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-07-21 22:09:19.154][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-21 22:09:19.155][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:19.156][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2024-07-21 22:09:19.157][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-21 22:09:19.158][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-07-21 22:09:19.158][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2024-07-21 22:09:19.158][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-07-21 22:09:19.158][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-07-21 22:09:19.158][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-07-21 22:09:19.158][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2024-07-21 22:09:19.158][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-07-21 22:09:19.158][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-07-21 22:09:19.158][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2024-07-21 22:09:19.158][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2024-07-21 22:09:19.158][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-07-21 22:09:19.159][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-07-21 22:09:19.160][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-21 22:09:19.160][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-21 22:09:19.160][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-21 22:09:19.161][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-07-21 22:09:19.161][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 22:09:19.162][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 22:09:19.163][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-21 22:09:19.164][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 22:09:19.165][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 22:09:19.166][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-21 22:09:19.167][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-07-21 22:09:19.167][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2024-07-21 22:09:19.168][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-21 22:09:19.169][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-21 22:09:19.169][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:19.170][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2024-07-21 22:09:19.170][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2024-07-21 22:09:19.176][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-07-21 22:09:19.178][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-21 22:09:19.179][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2024-07-21 22:09:19.180][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-07-21 22:09:19.182][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-07-21 22:09:19.183][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-07-21 22:09:19.186][super$initialize] Initialize connector chebi.
biodb.DEBUG[2024-07-21 22:09:19.187][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2024-07-21 22:09:19.189][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2024-07-21 22:09:19.190][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2024-07-21 22:09:19.191][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-21 22:09:19.192][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-21 22:09:19.193][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2024-07-21 22:09:19.194][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2024-07-21 22:09:19.196][biodb::testThat]
biodb.INFO [2024-07-21 22:09:19.197][biodb::testThat] Running test function test_chebi_convCasToChebi (" convCasToChebi() works. ").
biodb.INFO [2024-07-21 22:09:19.198][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-21 22:09:19.198][biodb::testThat]
biodb.DEBUG[2024-07-21 22:09:19.202][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2024-07-21 22:09:19.205][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 22:09:19.207][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2024-07-21 22:09:19.208][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 22:09:19.209][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2024-07-21 22:09:19.213][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-07-21 22:09:19.215][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 22:09:19.217][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2024-07-21 22:09:19.218][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 22:09:19.219][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2024-07-21 22:09:19.221][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:19.222][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:19.223][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:19.227][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:19.228][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:19.229][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.230][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:19.232][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-07-21 22:09:19.235][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 22:09:19.236][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2024-07-21 22:09:19.237][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 22:09:19.239][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2024-07-21 22:09:19.240][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:19.241][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:19.242][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:19.246][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:19.247][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:19.248][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.249][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:19.265][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:19.266][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:19.267][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:19.271][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:19.272][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:19.273][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.274][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:19.285][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-07-21 22:09:19.289][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 22:09:19.290][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2024-07-21 22:09:19.292][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 22:09:19.293][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2024-07-21 22:09:19.295][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:19.296][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:19.297][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:19.301][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:19.302][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:19.303][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:19.306][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-07-21 22:09:19.309][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 22:09:19.310][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2024-07-21 22:09:19.311][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 22:09:19.313][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2024-07-21 22:09:19.314][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:19.315][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:19.316][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:19.320][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:19.321][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:19.322][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:19.324][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:19.325][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:19.326][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:19.330][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:19.331][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:19.332][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.333][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:19.336][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=51-41-2&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-07-21 22:09:19.339][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 22:09:19.340][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0e2b277bfac878e1dcf7dc3f91acb8d3".
biodb.TRACE[2024-07-21 22:09:19.342][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 22:09:19.343][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/0e2b277bfac878e1dcf7dc3f91acb8d3.content".
biodb.DEBUG[2024-07-21 22:09:19.344][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:19.345][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:19.346][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:19.350][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:19.351][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:19.352][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.353][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:19.354][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=87605-72-9&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-07-21 22:09:19.357][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 22:09:19.359][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b767b3e02c49727a1749efea3e381744".
biodb.TRACE[2024-07-21 22:09:19.360][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 22:09:19.361][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/b767b3e02c49727a1749efea3e381744.content".
biodb.DEBUG[2024-07-21 22:09:19.363][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:19.364][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:19.365][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:19.369][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:19.370][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:19.371][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.371][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:19.373][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=14215-68-0&searchCategory=REGISTRY NUMBERS&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-07-21 22:09:19.376][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 22:09:19.377][cch$loadFileContent] Trying to load 1 files from cache: [1]: "70e3912746e7e39b39fbbffe6c90b502".
biodb.TRACE[2024-07-21 22:09:19.378][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 22:09:19.380][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/70e3912746e7e39b39fbbffe6c90b502.content".
biodb.DEBUG[2024-07-21 22:09:19.382][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:19.382][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:19.383][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:19.387][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:19.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:19.389][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-07-21 22:09:19.396][biodb::testThat]
biodb.INFO [2024-07-21 22:09:19.397][biodb::testThat] Running test function test_chebi_convInchiToChebi (" convInchiToChebi() works. ").
biodb.INFO [2024-07-21 22:09:19.398][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-21 22:09:19.398][biodb::testThat]
biodb.DEBUG[2024-07-21 22:09:19.401][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=InChI=1S/C15H24/c1-9(2)11-7-8-15(4)12-6-5-10(3)14(15)13(11)12/h5,9,11-14H,6-8H2,1-4H3/t11?,12?,13?,14?,15-/m0/s1&searchCategory=INCHI/INCHI KEY&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-07-21 22:09:19.405][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 22:09:19.406][cch$loadFileContent] Trying to load 1 files from cache: [1]: "64007787a4f3864bb479683766386808".
biodb.TRACE[2024-07-21 22:09:19.407][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 22:09:19.409][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/64007787a4f3864bb479683766386808.content".
biodb.DEBUG[2024-07-21 22:09:19.410][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:19.411][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:19.412][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:19.416][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:19.417][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:19.418][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:19.422][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=VLXDPFLIRFYIME-MWHZVNNOSA-N&searchCategory=INCHI/INCHI KEY&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-07-21 22:09:19.425][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 22:09:19.427][cch$loadFileContent] Trying to load 1 files from cache: [1]: "7547b08b3ebd50447d61026ab0af8d63".
biodb.TRACE[2024-07-21 22:09:19.428][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 22:09:19.430][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/7547b08b3ebd50447d61026ab0af8d63.content".
biodb.DEBUG[2024-07-21 22:09:19.431][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:19.432][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:19.433][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:19.437][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:19.438][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:19.439][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.440][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-07-21 22:09:19.444][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-07-21 22:09:19.445][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2024-07-21 22:09:19.446][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2024-07-21 22:09:19.447][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-07-21 22:09:19.448][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:19.449][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:19.449][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:19.450][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:19.456][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.457][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-07-21 22:09:19.461][biodb::testContext]
biodb.INFO [2024-07-21 22:09:19.462][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-21 22:09:19.463][biodb::testContext] Test context - Test web services
biodb.INFO [2024-07-21 22:09:19.464][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-21 22:09:19.465][biodb::testContext]
biodb.INFO [2024-07-21 22:09:19.466][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.12.0.
biodb.DEBUG[2024-07-21 22:09:19.468][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.19-bioc/R/site-library/biodb/definitions.yml".
biodb.DEBUG[2024-07-21 22:09:19.472][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-21 22:09:19.473][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-07-21 22:09:19.474][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-07-21 22:09:19.475][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:19.476][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:19.477][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-07-21 22:09:19.478][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-07-21 22:09:19.479][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:19.480][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:19.482][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-07-21 22:09:19.483][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-07-21 22:09:19.484][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:19.484][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.485][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:19.486][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-07-21 22:09:19.487][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-07-21 22:09:19.488][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-07-21 22:09:19.489][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:19.490][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.491][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:19.492][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-07-21 22:09:19.493][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-07-21 22:09:19.494][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-07-21 22:09:19.494][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:19.495][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.496][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:19.497][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-07-21 22:09:19.498][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-07-21 22:09:19.499][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:19.500][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:19.501][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-07-21 22:09:19.502][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-07-21 22:09:19.503][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-07-21 22:09:19.504][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:19.505][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:19.507][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-07-21 22:09:19.508][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-07-21 22:09:19.509][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:19.509][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.510][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:19.511][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-07-21 22:09:19.512][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-07-21 22:09:19.513][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-07-21 22:09:19.514][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:19.515][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.515][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:19.516][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-07-21 22:09:19.517][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-07-21 22:09:19.518][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-07-21 22:09:19.519][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-07-21 22:09:19.520][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-07-21 22:09:19.521][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-07-21 22:09:19.522][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:19.523][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.524][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:19.525][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-07-21 22:09:19.526][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-07-21 22:09:19.526][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:19.527][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.528][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:19.529][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-07-21 22:09:19.530][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-07-21 22:09:19.531][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:19.532][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.532][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:19.533][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-07-21 22:09:19.534][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-07-21 22:09:19.535][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:19.536][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.537][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:19.538][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-07-21 22:09:19.539][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-07-21 22:09:19.540][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:19.540][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:19.542][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-07-21 22:09:19.543][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-07-21 22:09:19.544][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:19.545][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:19.547][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-07-21 22:09:19.548][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-07-21 22:09:19.551][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-07-21 22:09:19.551][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:19.552][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:19.554][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-07-21 22:09:19.555][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-07-21 22:09:19.556][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-07-21 22:09:19.557][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:19.558][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:19.560][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-07-21 22:09:19.561][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-21 22:09:19.562][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-07-21 22:09:19.563][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:19.564][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-21 22:09:19.565][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:19.566][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-21 22:09:19.567][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-21 22:09:19.568][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-21 22:09:19.569][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-21 22:09:19.570][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-21 22:09:19.571][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:19.572][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-07-21 22:09:19.573][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-21 22:09:19.574][self$setPropertyValue]
biodb.DEBUG[2024-07-21 22:09:19.575][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:19.576][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-21 22:09:19.576][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-21 22:09:19.576][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-21 22:09:19.576][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-21 22:09:19.576][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-21 22:09:19.577][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-21 22:09:19.578][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 22:09:19.579][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 22:09:19.580][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-21 22:09:19.580][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 22:09:19.581][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 22:09:19.582][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-21 22:09:19.583][self$setPropertyValue]
biodb.DEBUG[2024-07-21 22:09:19.584][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-21 22:09:19.585][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-21 22:09:19.586][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-21 22:09:19.587][self$setPropertyValue]
biodb.DEBUG[2024-07-21 22:09:19.588][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-07-21 22:09:19.590][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-21 22:09:19.591][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-07-21 22:09:19.592][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:19.593][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-21 22:09:19.594][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:19.594][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-21 22:09:19.595][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-21 22:09:19.596][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-21 22:09:19.597][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-21 22:09:19.598][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-21 22:09:19.599][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:19.600][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-07-21 22:09:19.601][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-21 22:09:19.602][self$setPropertyValue]
biodb.DEBUG[2024-07-21 22:09:19.603][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:19.604][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-21 22:09:19.604][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-21 22:09:19.604][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-21 22:09:19.604][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-21 22:09:19.604][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-21 22:09:19.605][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-21 22:09:19.606][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 22:09:19.607][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 22:09:19.608][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-21 22:09:19.609][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 22:09:19.610][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 22:09:19.611][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-21 22:09:19.612][self$setPropertyValue]
biodb.DEBUG[2024-07-21 22:09:19.613][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-21 22:09:19.619][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-21 22:09:19.621][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-21 22:09:19.622][self$setPropertyValue]
biodb.DEBUG[2024-07-21 22:09:19.623][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-07-21 22:09:19.625][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:19.626][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-07-21 22:09:19.627][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:19.628][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-21 22:09:19.629][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:19.630][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-21 22:09:19.631][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-21 22:09:19.632][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-21 22:09:19.633][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-21 22:09:19.634][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-21 22:09:19.635][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-21 22:09:19.636][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-07-21 22:09:19.637][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-21 22:09:19.638][self$setPropertyValue]
biodb.DEBUG[2024-07-21 22:09:19.639][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:19.640][self$setPropertyValue]
biodb.DEBUG[2024-07-21 22:09:19.641][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-21 22:09:19.642][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 22:09:19.642][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 22:09:19.643][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-21 22:09:19.644][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 22:09:19.645][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 22:09:19.646][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-21 22:09:19.647][self$setPropertyValue]
biodb.DEBUG[2024-07-21 22:09:19.648][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-21 22:09:19.649][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-21 22:09:19.650][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-21 22:09:19.651][self$setPropertyValue]
biodb.DEBUG[2024-07-21 22:09:19.652][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-07-21 22:09:19.654][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:19.655][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-07-21 22:09:19.656][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:19.657][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-21 22:09:19.658][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:19.659][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-21 22:09:19.660][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-21 22:09:19.660][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-21 22:09:19.661][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-21 22:09:19.662][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-21 22:09:19.663][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-21 22:09:19.664][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-07-21 22:09:19.665][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-21 22:09:19.666][self$setPropertyValue]
biodb.DEBUG[2024-07-21 22:09:19.667][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:19.668][self$setPropertyValue]
biodb.DEBUG[2024-07-21 22:09:19.669][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-21 22:09:19.670][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 22:09:19.671][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 22:09:19.672][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-21 22:09:19.673][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 22:09:19.674][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 22:09:19.675][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-21 22:09:19.676][self$setPropertyValue]
biodb.DEBUG[2024-07-21 22:09:19.677][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-21 22:09:19.677][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-21 22:09:19.678][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-21 22:09:19.679][self$setPropertyValue]
biodb.DEBUG[2024-07-21 22:09:19.681][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-21 22:09:19.681][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.682][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:19.683][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:19.684][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:19.685][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:19.686][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.687][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:19.688][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:19.688][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:19.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:19.690][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:19.692][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:19.693][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:19.694][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:19.694][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.695][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:19.696][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:19.697][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:19.698][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:19.699][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:19.700][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:19.701][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:19.702][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:19.703][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:19.705][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:19.706][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:19.706][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:19.707][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:19.709][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:19.710][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:19.711][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:19.711][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.712][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:19.713][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:19.714][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:19.715][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:19.716][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.717][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:19.717][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:19.718][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:19.719][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:19.720][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:19.722][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:19.722][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:19.723][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:19.724][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.725][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:19.726][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:19.727][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:19.728][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:19.728][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:19.730][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:19.731][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:19.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:19.733][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.734][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:19.734][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:19.735][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:19.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:19.737][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:19.739][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:19.740][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:19.740][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:19.741][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.742][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:19.743][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:19.744][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:19.745][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:19.745][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.746][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:19.747][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:19.748][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:19.749][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:19.750][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.751][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:19.751][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:19.752][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:19.753][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:19.754][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.755][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:19.756][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-07-21 22:09:19.757][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-07-21 22:09:19.758][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-07-21 22:09:19.760][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-07-21 22:09:19.761][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-07-21 22:09:19.762][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-07-21 22:09:19.764][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-07-21 22:09:19.765][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-07-21 22:09:19.766][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-07-21 22:09:19.768][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-07-21 22:09:19.769][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-21 22:09:19.770][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-07-21 22:09:19.772][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-07-21 22:09:19.778][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-07-21 22:09:19.780][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-07-21 22:09:19.782][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-07-21 22:09:19.783][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-07-21 22:09:19.784][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-07-21 22:09:19.785][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-07-21 22:09:19.787][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-07-21 22:09:19.788][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-07-21 22:09:19.789][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-07-21 22:09:19.791][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-07-21 22:09:19.792][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-07-21 22:09:19.794][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-07-21 22:09:19.795][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-07-21 22:09:19.796][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-07-21 22:09:19.798][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-07-21 22:09:19.799][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-07-21 22:09:19.800][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-07-21 22:09:19.802][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-07-21 22:09:19.803][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-07-21 22:09:19.804][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-07-21 22:09:19.806][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-07-21 22:09:19.807][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-07-21 22:09:19.808][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-07-21 22:09:19.810][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-07-21 22:09:19.811][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-07-21 22:09:19.812][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-07-21 22:09:19.814][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-07-21 22:09:19.815][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-07-21 22:09:19.816][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-07-21 22:09:19.818][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-07-21 22:09:19.819][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-07-21 22:09:19.820][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-07-21 22:09:19.822][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-07-21 22:09:19.823][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-07-21 22:09:19.824][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-07-21 22:09:19.826][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-07-21 22:09:19.827][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-07-21 22:09:19.828][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-07-21 22:09:19.830][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-07-21 22:09:19.831][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-07-21 22:09:19.832][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-07-21 22:09:19.834][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-07-21 22:09:19.835][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-07-21 22:09:19.837][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-07-21 22:09:19.838][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-07-21 22:09:19.839][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-07-21 22:09:19.841][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-07-21 22:09:19.842][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-07-21 22:09:19.843][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-07-21 22:09:19.845][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-07-21 22:09:19.846][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-07-21 22:09:19.847][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-07-21 22:09:19.849][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-07-21 22:09:19.850][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-07-21 22:09:19.851][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-07-21 22:09:19.853][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-07-21 22:09:19.854][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-07-21 22:09:19.855][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-07-21 22:09:19.857][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-07-21 22:09:19.858][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-07-21 22:09:19.859][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-07-21 22:09:19.860][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-07-21 22:09:19.862][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-07-21 22:09:19.863][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-07-21 22:09:19.864][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-07-21 22:09:19.866][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-07-21 22:09:19.867][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-07-21 22:09:19.868][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-07-21 22:09:19.870][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-07-21 22:09:19.871][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-07-21 22:09:19.872][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-07-21 22:09:19.874][initialize] This is biodb version 1.12.0.
biodb.DEBUG[2024-07-21 22:09:19.875][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-21 22:09:19.876][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:19.877][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:19.877][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.878][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:19.879][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:19.880][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:19.881][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:19.882][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:19.883][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:19.883][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.884][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:19.885][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:19.886][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:19.887][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:19.888][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:19.889][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:19.889][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:19.891][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:19.892][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:19.893][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:19.894][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:19.895][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:19.895][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.896][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:19.897][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:19.898][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:19.899][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:19.900][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:19.901][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:19.901][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.902][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:19.903][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:19.904][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:19.905][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:19.906][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:19.907][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:19.907][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:19.909][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:19.910][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:19.911][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:19.912][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:19.912][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:19.913][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.914][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:19.915][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:19.916][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:19.917][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:19.918][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:19.918][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:19.919][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:19.921][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:19.922][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:19.923][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:19.924][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:19.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:19.925][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:19.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:20.121][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:20.123][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:20.124][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:20.125][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:20.125][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:20.126][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:20.127][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:20.128][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:20.129][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:20.130][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:20.131][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:20.131][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:20.132][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:20.133][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:20.134][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:20.135][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:20.136][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:20.137][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:20.137][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:20.138][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:20.139][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:20.140][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:20.141][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:20.142][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:20.143][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:20.143][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:20.144][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:20.145][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:20.146][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:20.147][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:20.148][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:20.148][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:20.149][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:20.150][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:20.151][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:20.152][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:20.153][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:20.154][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:20.154][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:20.155][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:20.156][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:20.157][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:20.158][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:20.159][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:20.159][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:20.160][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:20.161][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:20.162][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:20.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:20.164][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:20.164][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:20.165][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:20.166][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:20.167][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:20.168][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:20.169][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:20.170][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:20.170][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:20.171][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:20.172][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:20.173][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:20.174][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:20.175][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:20.176][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.19-bioc/R/site-library/biodbChebi/definitions.yml".
biodb.DEBUG[2024-07-21 22:09:20.178][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2024-07-21 22:09:20.179][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-21 22:09:20.180][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-07-21 22:09:20.181][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:20.182][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-21 22:09:20.183][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:20.184][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-21 22:09:20.185][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:20.186][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2024-07-21 22:09:20.187][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-07-21 22:09:20.188][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-21 22:09:20.189][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:20.190][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2024-07-21 22:09:20.191][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-21 22:09:20.192][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-07-21 22:09:20.192][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2024-07-21 22:09:20.192][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-07-21 22:09:20.192][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-07-21 22:09:20.192][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-07-21 22:09:20.192][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2024-07-21 22:09:20.192][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-07-21 22:09:20.192][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-07-21 22:09:20.192][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2024-07-21 22:09:20.192][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2024-07-21 22:09:20.192][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-07-21 22:09:20.193][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-07-21 22:09:20.194][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-21 22:09:20.194][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-21 22:09:20.194][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-21 22:09:20.195][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-07-21 22:09:20.196][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 22:09:20.196][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 22:09:20.197][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-21 22:09:20.198][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 22:09:20.199][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 22:09:20.200][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-21 22:09:20.201][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-07-21 22:09:20.201][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2024-07-21 22:09:20.202][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-21 22:09:20.203][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-21 22:09:20.203][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:20.204][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2024-07-21 22:09:20.204][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2024-07-21 22:09:20.206][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-07-21 22:09:20.207][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-21 22:09:20.208][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2024-07-21 22:09:20.210][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-07-21 22:09:20.211][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-07-21 22:09:20.213][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-07-21 22:09:20.216][super$initialize] Initialize connector chebi.
biodb.DEBUG[2024-07-21 22:09:20.216][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2024-07-21 22:09:20.218][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2024-07-21 22:09:20.219][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2024-07-21 22:09:20.220][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-21 22:09:20.221][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-21 22:09:20.222][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2024-07-21 22:09:20.223][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2024-07-21 22:09:20.224][biodb::testThat]
biodb.INFO [2024-07-21 22:09:20.225][biodb::testThat] Running test function test.chebi.wsGetLiteEntity (" Web service getLiteEntity works fine. ").
biodb.INFO [2024-07-21 22:09:20.226][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-21 22:09:20.227][biodb::testThat]
biodb.DEBUG[2024-07-21 22:09:20.230][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2024-07-21 22:09:20.233][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 22:09:20.234][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2024-07-21 22:09:20.235][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 22:09:20.237][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2024-07-21 22:09:20.240][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI ID&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-07-21 22:09:20.243][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 22:09:20.244][cch$loadFileContent] Trying to load 1 files from cache: [1]: "04c26672f8368e71348af4b34238160e".
biodb.TRACE[2024-07-21 22:09:20.245][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 22:09:20.246][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/04c26672f8368e71348af4b34238160e.content".
biodb.INFO [2024-07-21 22:09:20.254][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-07-21 22:09:20.255][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2024-07-21 22:09:20.256][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2024-07-21 22:09:20.257][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-07-21 22:09:20.258][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:20.258][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:20.259][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:20.260][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:20.261][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:20.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-07-21 22:09:20.265][biodb::testContext]
biodb.INFO [2024-07-21 22:09:20.266][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-21 22:09:20.267][biodb::testContext] Test context - Non regression tests
biodb.INFO [2024-07-21 22:09:20.268][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-21 22:09:20.269][biodb::testContext]
biodb.INFO [2024-07-21 22:09:20.271][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.12.0.
biodb.DEBUG[2024-07-21 22:09:20.272][self$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.19-bioc/R/site-library/biodb/definitions.yml".
biodb.DEBUG[2024-07-21 22:09:20.276][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-21 22:09:20.277][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-07-21 22:09:20.278][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-07-21 22:09:20.279][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:20.280][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:20.280][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:20.281][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-07-21 22:09:20.282][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-07-21 22:09:20.283][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:20.284][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:20.285][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:20.286][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-07-21 22:09:20.287][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-07-21 22:09:20.288][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:20.293][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:20.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:20.295][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-07-21 22:09:20.296][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-07-21 22:09:20.297][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-07-21 22:09:20.298][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:20.298][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:20.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:20.300][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-07-21 22:09:20.301][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-07-21 22:09:20.302][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-07-21 22:09:20.303][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:20.304][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:20.304][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:20.305][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-07-21 22:09:20.306][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-07-21 22:09:20.307][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:20.308][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:20.309][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:20.310][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-07-21 22:09:20.311][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-07-21 22:09:20.312][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-07-21 22:09:20.312][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:20.313][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:20.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:20.315][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-07-21 22:09:20.316][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-07-21 22:09:20.317][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:20.317][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:20.318][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:20.319][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-07-21 22:09:20.320][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-07-21 22:09:20.321][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-07-21 22:09:20.322][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:20.323][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:20.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:20.324][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-07-21 22:09:20.325][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-07-21 22:09:20.326][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-07-21 22:09:20.327][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-07-21 22:09:20.328][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-07-21 22:09:20.329][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-07-21 22:09:20.330][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:20.331][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:20.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:20.332][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-07-21 22:09:20.333][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-07-21 22:09:20.334][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:20.335][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:20.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:20.337][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-07-21 22:09:20.338][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-07-21 22:09:20.338][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:20.339][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:20.340][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:20.341][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-07-21 22:09:20.342][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-07-21 22:09:20.343][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:20.344][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:20.344][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:20.345][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-07-21 22:09:20.346][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-07-21 22:09:20.347][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:20.348][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:20.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:20.350][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-07-21 22:09:20.350][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-07-21 22:09:20.351][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:20.352][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:20.353][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:20.354][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-07-21 22:09:20.355][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-07-21 22:09:20.358][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-07-21 22:09:20.358][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:20.359][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:20.360][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:20.361][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-07-21 22:09:20.362][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-07-21 22:09:20.363][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-07-21 22:09:20.364][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:20.364][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:20.365][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:20.366][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-07-21 22:09:20.368][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-21 22:09:20.369][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-07-21 22:09:20.370][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:20.371][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-21 22:09:20.372][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:20.372][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-21 22:09:20.373][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-21 22:09:20.374][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-21 22:09:20.375][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-21 22:09:20.376][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-21 22:09:20.377][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:20.378][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-07-21 22:09:20.379][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-21 22:09:20.380][self$setPropertyValue]
biodb.DEBUG[2024-07-21 22:09:20.381][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:20.382][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-21 22:09:20.382][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-21 22:09:20.382][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-21 22:09:20.382][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-21 22:09:20.382][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-21 22:09:20.383][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-21 22:09:20.383][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 22:09:20.384][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 22:09:20.385][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-21 22:09:20.386][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 22:09:20.387][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 22:09:20.388][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-21 22:09:20.389][self$setPropertyValue]
biodb.DEBUG[2024-07-21 22:09:20.389][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-21 22:09:20.390][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-21 22:09:20.391][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-21 22:09:20.392][self$setPropertyValue]
biodb.DEBUG[2024-07-21 22:09:20.393][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-07-21 22:09:20.395][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-21 22:09:20.396][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-07-21 22:09:20.397][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:20.397][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-21 22:09:20.398][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:20.399][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-21 22:09:20.400][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-21 22:09:20.401][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-21 22:09:20.402][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-21 22:09:20.403][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-21 22:09:20.404][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:20.405][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-07-21 22:09:20.406][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-21 22:09:20.407][self$setPropertyValue]
biodb.DEBUG[2024-07-21 22:09:20.408][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:20.408][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-21 22:09:20.408][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-21 22:09:20.408][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-21 22:09:20.408][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-21 22:09:20.408][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-21 22:09:20.409][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-21 22:09:20.410][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 22:09:20.411][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 22:09:20.412][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-21 22:09:20.413][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 22:09:20.414][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 22:09:20.415][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-21 22:09:20.416][self$setPropertyValue]
biodb.DEBUG[2024-07-21 22:09:20.417][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-21 22:09:20.417][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-21 22:09:20.418][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-21 22:09:20.419][self$setPropertyValue]
biodb.DEBUG[2024-07-21 22:09:20.420][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-07-21 22:09:20.422][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:20.423][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-07-21 22:09:20.424][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:20.425][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-21 22:09:20.426][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:20.427][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-21 22:09:20.428][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-21 22:09:20.428][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-21 22:09:20.429][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-21 22:09:20.430][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-21 22:09:20.431][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-21 22:09:20.432][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-07-21 22:09:20.433][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-21 22:09:20.434][self$setPropertyValue]
biodb.DEBUG[2024-07-21 22:09:20.435][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:20.436][self$setPropertyValue]
biodb.DEBUG[2024-07-21 22:09:20.437][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-21 22:09:20.438][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 22:09:20.439][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 22:09:20.439][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-21 22:09:20.440][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 22:09:20.441][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 22:09:20.442][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-21 22:09:20.443][self$setPropertyValue]
biodb.DEBUG[2024-07-21 22:09:20.444][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-21 22:09:20.445][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-21 22:09:20.446][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-21 22:09:20.447][self$setPropertyValue]
biodb.DEBUG[2024-07-21 22:09:20.448][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-07-21 22:09:20.453][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:20.454][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-07-21 22:09:20.455][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:20.456][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-21 22:09:20.457][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:20.458][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-21 22:09:20.459][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-21 22:09:20.460][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-21 22:09:20.461][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-21 22:09:20.462][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-21 22:09:20.462][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-21 22:09:20.463][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-07-21 22:09:20.464][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-21 22:09:20.465][self$setPropertyValue]
biodb.DEBUG[2024-07-21 22:09:20.466][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:20.467][self$setPropertyValue]
biodb.DEBUG[2024-07-21 22:09:20.468][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-21 22:09:20.469][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 22:09:20.470][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 22:09:20.471][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-21 22:09:20.471][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 22:09:20.472][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 22:09:20.473][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-21 22:09:20.474][self$setPropertyValue]
biodb.DEBUG[2024-07-21 22:09:20.475][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-21 22:09:20.476][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-21 22:09:20.477][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-21 22:09:20.478][self$setPropertyValue]
biodb.DEBUG[2024-07-21 22:09:20.479][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-21 22:09:20.480][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:20.480][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:20.481][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:20.482][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:20.483][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:20.484][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:20.485][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:20.485][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:20.486][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:20.487][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:20.488][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:20.489][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:20.490][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:20.490][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:20.491][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:20.492][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:20.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:20.494][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:20.494][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:20.495][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:20.496][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:20.497][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:20.498][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:20.499][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:20.499][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:20.500][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:20.501][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:20.502][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:20.503][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:20.503][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:20.504][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:20.505][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:20.506][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:20.507][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:20.508][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:20.508][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:20.509][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:20.510][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:20.511][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:20.512][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:20.513][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:20.513][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:20.514][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:20.515][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:20.516][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:20.517][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:20.517][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:20.518][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:20.519][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:20.520][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:20.521][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:20.522][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:20.522][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:20.523][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:20.524][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:20.525][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:20.526][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:20.526][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:20.527][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:20.528][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:20.529][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:20.530][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:20.531][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:20.531][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:20.532][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:20.533][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:20.534][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:20.535][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:20.535][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:20.536][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:20.537][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:20.538][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:20.539][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:20.539][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:20.540][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:20.541][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:20.542][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:20.543][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:20.544][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:20.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:20.545][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:20.546][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:20.547][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:20.548][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:20.549][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:20.549][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:20.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:20.551][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-07-21 22:09:20.552][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-07-21 22:09:20.554][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-07-21 22:09:20.555][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-07-21 22:09:20.556][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-07-21 22:09:20.558][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-07-21 22:09:20.559][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-07-21 22:09:20.560][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-07-21 22:09:20.561][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-07-21 22:09:20.563][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-07-21 22:09:20.564][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-21 22:09:20.565][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-07-21 22:09:20.566][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-07-21 22:09:20.568][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-07-21 22:09:20.569][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-07-21 22:09:20.570][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-07-21 22:09:20.572][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-07-21 22:09:20.573][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-07-21 22:09:20.574][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-07-21 22:09:20.576][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-07-21 22:09:20.577][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-07-21 22:09:20.578][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-07-21 22:09:20.580][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-07-21 22:09:20.581][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-07-21 22:09:20.582][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-07-21 22:09:20.584][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-07-21 22:09:20.585][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-07-21 22:09:20.586][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-07-21 22:09:20.588][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-07-21 22:09:20.589][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-07-21 22:09:20.590][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-07-21 22:09:20.591][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-07-21 22:09:20.593][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-07-21 22:09:20.594][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-07-21 22:09:20.595][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-07-21 22:09:20.597][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-07-21 22:09:20.598][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-07-21 22:09:20.599][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-07-21 22:09:20.601][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-07-21 22:09:20.602][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-07-21 22:09:20.603][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-07-21 22:09:20.604][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-07-21 22:09:20.610][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-07-21 22:09:20.612][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-07-21 22:09:20.613][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-07-21 22:09:20.614][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-07-21 22:09:20.616][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-07-21 22:09:20.617][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-07-21 22:09:20.618][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-07-21 22:09:20.619][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-07-21 22:09:20.621][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-07-21 22:09:20.622][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-07-21 22:09:20.623][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-07-21 22:09:20.624][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-07-21 22:09:20.626][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-07-21 22:09:20.627][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-07-21 22:09:20.628][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-07-21 22:09:20.630][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-07-21 22:09:20.631][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-07-21 22:09:20.632][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-07-21 22:09:20.633][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-07-21 22:09:20.635][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-07-21 22:09:20.636][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-07-21 22:09:20.637][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-07-21 22:09:20.638][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-07-21 22:09:20.640][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-07-21 22:09:20.641][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-07-21 22:09:20.642][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-07-21 22:09:20.643][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-07-21 22:09:20.645][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-07-21 22:09:20.646][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-07-21 22:09:20.647][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-07-21 22:09:20.648][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-07-21 22:09:20.650][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-07-21 22:09:20.651][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-07-21 22:09:20.652][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-07-21 22:09:20.653][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-07-21 22:09:20.655][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-07-21 22:09:20.656][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-07-21 22:09:20.657][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-07-21 22:09:20.658][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-07-21 22:09:20.660][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-07-21 22:09:20.661][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-07-21 22:09:20.662][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-07-21 22:09:20.664][initialize] This is biodb version 1.12.0.
biodb.DEBUG[2024-07-21 22:09:20.665][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-21 22:09:20.665][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:20.666][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:20.667][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:20.668][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:20.669][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:20.669][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:20.670][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:20.671][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:20.672][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:20.673][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:20.674][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:20.674][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:20.675][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:20.676][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:20.677][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:20.678][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:20.679][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:20.679][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:20.680][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:20.681][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:20.682][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:20.683][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:20.684][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:20.684][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:20.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:20.686][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:20.687][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:20.688][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:20.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:20.689][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:20.690][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:20.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:20.692][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:20.693][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:20.693][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:20.694][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:20.695][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:20.696][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:20.697][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:20.698][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:20.698][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:20.699][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:20.700][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:20.701][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:20.702][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:20.703][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:20.703][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:20.704][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:20.705][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:20.706][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:20.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:20.707][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:20.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:20.709][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:20.710][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:20.711][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:20.712][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:20.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:20.713][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:20.714][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:20.715][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:20.716][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:20.717][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:20.717][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:20.718][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:20.719][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:20.720][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:20.721][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:20.722][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:20.722][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:20.723][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:20.724][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:20.725][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:20.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:20.727][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:20.727][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:20.728][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:20.729][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:20.730][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:20.731][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:20.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:20.732][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:20.733][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:20.734][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:20.735][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:20.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:20.737][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:20.737][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:20.738][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:20.739][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:20.740][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:20.741][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:20.742][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:20.742][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:20.743][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:20.744][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:20.745][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:20.746][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:20.746][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:20.747][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:20.748][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:20.749][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:20.750][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:20.751][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:20.751][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:20.752][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:20.753][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:20.754][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:20.755][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:20.756][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:20.756][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:20.757][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:20.758][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:20.759][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:20.760][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:20.761][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:20.766][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-21 22:09:20.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:20.767][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:20.768][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:20.769][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:20.770][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:20.771][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-21 22:09:20.772][biodb$loadDefinitions] Load definitions from file "/home/biocbuild/bbs-3.19-bioc/R/site-library/biodbChebi/definitions.yml".
biodb.DEBUG[2024-07-21 22:09:20.773][self$getDbsInfo()$define] Define connector chebi.
biodb.DEBUG[2024-07-21 22:09:20.775][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-21 22:09:20.776][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-07-21 22:09:20.777][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:20.778][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-21 22:09:20.779][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:20.780][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-21 22:09:20.781][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:20.782][self$setPropertyValue] Setting property "entry.content.encoding" to "UTF-8".
biodb.DEBUG[2024-07-21 22:09:20.782][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-07-21 22:09:20.783][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-21 22:09:20.784][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:20.785][self$setPropertyValue] Setting property "name" to "ChEBI".
biodb.DEBUG[2024-07-21 22:09:20.786][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-21 22:09:20.787][self$setPropertyValue] Setting property "parsing.expr" to "substring-after(//chebi:return/chebi:chebiId,'CHEBI:')".
biodb.DEBUG[2024-07-21 22:09:20.787][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:charge".
biodb.DEBUG[2024-07-21 22:09:20.787][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:Formulae/chebi:source[text()='ChEBI']/../chebi:data", "(//chebi:Formulae/chebi:data)[1]")".
biodb.DEBUG[2024-07-21 22:09:20.787][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchi".
biodb.DEBUG[2024-07-21 22:09:20.787][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:inchiKey".
biodb.DEBUG[2024-07-21 22:09:20.787][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:DatabaseLinks/chebi:type[text()='KEGG COMPOUND accession']/../chebi:data".
biodb.DEBUG[2024-07-21 22:09:20.787][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:mass".
biodb.DEBUG[2024-07-21 22:09:20.787][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:monoisotopicMass".
biodb.DEBUG[2024-07-21 22:09:20.787][self$setPropertyValue] Setting property "parsing.expr" to "c("//chebi:chebiAsciiName", "//chebi:Synonyms/chebi:data")".
biodb.DEBUG[2024-07-21 22:09:20.787][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:entityStar".
biodb.DEBUG[2024-07-21 22:09:20.787][self$setPropertyValue] Setting property "parsing.expr" to "//chebi:return/chebi:smiles".
biodb.DEBUG[2024-07-21 22:09:20.788][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-07-21 22:09:20.789][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-21 22:09:20.789][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-21 22:09:20.789][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-21 22:09:20.790][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-07-21 22:09:20.791][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 22:09:20.792][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 22:09:20.793][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-21 22:09:20.793][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-21 22:09:20.794][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-21 22:09:20.795][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-21 22:09:20.796][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/chebi/".
biodb.DEBUG[2024-07-21 22:09:20.796][self$setPropertyValue] Setting property "urls" to "https://www.ebi.ac.uk/webservices/chebi/2.0/".
biodb.DEBUG[2024-07-21 22:09:20.797][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-21 22:09:20.798][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-21 22:09:20.799][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-07-21 22:09:20.800][self$setPropertyValue] Setting property "xml.ns" to "https://www.ebi.ac.uk/webservices/chebi".
biodb.DEBUG[2024-07-21 22:09:20.800][self$setPropertyValue] Setting property "xml.ns" to "http://www.w3.org/2001/XMLSchema".
biodb.DEBUG[2024-07-21 22:09:20.801][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-07-21 22:09:20.802][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-21 22:09:20.804][self$getEntryFields()$define] Define field n_stars.
biodb.DEBUG[2024-07-21 22:09:20.805][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-07-21 22:09:20.806][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-07-21 22:09:20.808][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-07-21 22:09:20.811][super$initialize] Initialize connector chebi.
biodb.DEBUG[2024-07-21 22:09:20.812][super$initialize] Register connector chebi with the request scheduler
biodb.DEBUG[2024-07-21 22:09:20.813][private$bdb$getRequestScheduler()$re ...] Register connector chebi.
biodb.DEBUG[2024-07-21 22:09:20.814][private$addConnectorRules] Create new rule for URL "www.ebi.ac.uk" of connector "chebi".
biodb.DEBUG[2024-07-21 22:09:20.815][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-21 22:09:20.816][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-21 22:09:20.817][rule$addConnector] Connector "chebi" is already listed in rule "www.ebi.ac.uk".
biodb.DEBUG[2024-07-21 22:09:20.818][biodb$getFactory()$createConn] Creating new connector chebi for database class chebi .
biodb.INFO [2024-07-21 22:09:20.819][biodb::testThat]
biodb.INFO [2024-07-21 22:09:20.820][biodb::testThat] Running test function test.chebi.encoding.issue.in.xml (" ChEBI encoding issue in XML is handled. ").
biodb.INFO [2024-07-21 22:09:20.821][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-21 22:09:20.822][biodb::testThat]
biodb.DEBUG[2024-07-21 22:09:20.825][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/webservice?wsdl".
biodb.DEBUG[2024-07-21 22:09:20.828][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 22:09:20.829][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1ad88a023c4ce2bc0629db4acebeee05".
biodb.TRACE[2024-07-21 22:09:20.830][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 22:09:20.832][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/1ad88a023c4ce2bc0629db4acebeee05.content".
biodb.DEBUG[2024-07-21 22:09:20.835][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.ebi.ac.uk/webservices/chebi/2.0/test/getLiteEntity?search=2571&searchCategory=CHEBI ID&maximumResults=10&starsCategory=ALL".
biodb.DEBUG[2024-07-21 22:09:20.837][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-21 22:09:20.839][cch$loadFileContent] Trying to load 1 files from cache: [1]: "04c26672f8368e71348af4b34238160e".
biodb.TRACE[2024-07-21 22:09:20.840][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 22:09:20.841][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/04c26672f8368e71348af4b34238160e.content".
biodb.DEBUG[2024-07-21 22:09:20.845][private$loadEntries] Creating entries from ids [1]: "2571".
biodb.DEBUG[2024-07-21 22:09:20.846][conn$getEntryContent] Get ChEBI entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-21 22:09:20.847][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2571".
biodb.TRACE[2024-07-21 22:09:20.849][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-21 22:09:20.851][loadFileContents] Loaded 1 files from cache: [1]: "/home/biocbuild/.cache/R/biodb/chebi-0c5076ac2a43d16dbce503a44b09f649/2571.xml".
biodb.DEBUG[2024-07-21 22:09:20.852][conn$getEntryContent] 1 ChEBI entry content(s) loaded from cache.
biodb.DEBUG[2024-07-21 22:09:20.853][self$createEntryFromContent] Creating ChEBI entries from 1 content(s).
biodb.DEBUG[2024-07-21 22:09:20.854][self$createEntryFromContent] Parsing 1 ChEBI entries.
biodb.DEBUG[2024-07-21 22:09:20.855][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-21 22:09:20.856][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:20.857][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:20.861][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:20.862][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:20.863][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:20.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-21 22:09:20.867][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:20.868][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:20.869][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:20.870][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:20.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:20.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:20.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:20.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:20.875][ef$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 22:09:20.876][ef$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 22:09:20.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:20.878][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:20.879][self$getBiodb()$getEntryFields()$get] Asked field names are: charge.
biodb.TRACE[2024-07-21 22:09:20.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: charge.
biodb.TRACE[2024-07-21 22:09:20.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:20.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:20.883][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 22:09:20.884][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 22:09:20.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:20.886][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:20.887][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-21 22:09:20.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-21 22:09:20.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:20.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:20.891][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-21 22:09:20.892][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-21 22:09:20.893][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:20.894][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:20.895][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-21 22:09:20.896][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-21 22:09:20.897][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:20.898][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:20.899][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:20.900][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:20.901][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:20.902][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:20.904][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:20.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-07-21 22:09:20.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:20.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:20.907][ef$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 22:09:20.908][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:20.909][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:20.910][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:20.911][self$getBiodb()$getEntryFields()$get] Asked field names are: mass.
biodb.TRACE[2024-07-21 22:09:20.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-21 22:09:20.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:20.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:20.915][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:20.916][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:20.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:20.918][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:20.919][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:20.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-21 22:09:20.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:20.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:20.923][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:20.924][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:20.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:20.926][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:20.928][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-21 22:09:20.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-21 22:09:20.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:20.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:20.936][ef$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 22:09:20.937][ef$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 22:09:20.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:20.939][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:20.940][self$getBiodb()$getEntryFields()$get] Asked field names are: n_stars.
biodb.TRACE[2024-07-21 22:09:20.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: n.stars.
biodb.TRACE[2024-07-21 22:09:20.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:20.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:20.944][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 22:09:20.945][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 22:09:20.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:20.946][ef$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:20.948][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-07-21 22:09:20.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-07-21 22:09:20.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:20.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:20.951][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:20.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:20.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:20.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:20.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:20.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:20.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:20.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:20.959][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:20.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:20.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:20.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:20.962][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-07-21 22:09:20.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-07-21 22:09:20.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:20.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:20.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:20.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:20.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:20.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:20.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:20.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:20.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:20.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:20.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:20.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:20.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:20.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:20.977][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:20.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:20.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:20.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:20.981][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:20.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:20.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:20.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-21 22:09:20.984][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-21 22:09:20.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-21 22:09:20.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-21 22:09:20.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-21 22:09:20.988][self$createEntryFromContent] Accession numbers: 2571.
biodb.INFO [2024-07-21 22:09:20.991][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-07-21 22:09:20.992][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector chebi from the request scheduler
biodb.INFO [2024-07-21 22:09:20.993][self$deleteConn] Connector "chebi" deleted.
biodb.DEBUG[2024-07-21 22:09:20.994][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-07-21 22:09:20.995][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-21 22:09:20.996][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-21 22:09:20.996][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-21 22:09:20.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-21 22:09:20.998][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-07-21 22:09:20.999][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 358 ]
>
> proc.time()
user system elapsed
15.172 0.661 18.071
biodbChebi.Rcheck/biodbChebi-Ex.timings
| name | user | system | elapsed | |
| ChebiConn | 1.088 | 0.145 | 2.405 | |
| ChebiEntry | 0.159 | 0.000 | 0.160 | |