Back to Multiple platform build/check report for BioC 3.19: simplified long |
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This page was generated on 2024-06-25 17:42 -0400 (Tue, 25 Jun 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4760 |
palomino3 | Windows Server 2022 Datacenter | x64 | 4.4.0 (2024-04-24 ucrt) -- "Puppy Cup" | 4494 |
merida1 | macOS 12.7.4 Monterey | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4508 |
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4466 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 987/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
HPiP 1.10.0 (landing page) Matineh Rahmatbakhsh
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | ![]() | ||||||||
palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | ![]() | ||||||||
merida1 | macOS 12.7.4 Monterey / x86_64 | OK | OK | OK | OK | ![]() | ||||||||
kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | ![]() | ||||||||
To the developers/maintainers of the HPiP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: HPiP |
Version: 1.10.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.10.0.tar.gz |
StartedAt: 2024-06-24 06:01:40 -0400 (Mon, 24 Jun 2024) |
EndedAt: 2024-06-24 06:11:07 -0400 (Mon, 24 Jun 2024) |
EllapsedTime: 567.6 seconds |
RetCode: 0 |
Status: OK |
CheckDir: HPiP.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.10.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.19-bioc/meat/HPiP.Rcheck’ * using R version 4.4.0 (2024-04-24) * using platform: x86_64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Monterey 12.7.4 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘HPiP/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘HPiP’ version ‘1.10.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘HPiP’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE License stub is invalid DCF. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE checkRd: (-1) getHPI.Rd:29: Lost braces 29 | then the Kronecker product is the code{(pm × qn)} block matrix | ^ * checking Rd metadata ... OK * checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: ‘ftrCOOL’ * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking R/sysdata.rda ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed var_imp 53.266 1.966 68.086 corr_plot 51.643 1.898 62.563 FSmethod 51.116 1.849 60.971 pred_ensembel 25.407 0.554 25.550 calculateTC 4.852 0.460 6.169 enrichfindP 0.926 0.088 15.386 getFASTA 0.124 0.017 9.077 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘runTests.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 3 NOTEs See ‘/Users/biocbuild/bbs-3.19-bioc/meat/HPiP.Rcheck/00check.log’ for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’ * installing *source* package ‘HPiP’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: x86_64-apple-darwin20 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > BiocGenerics:::testPackage('HPiP') No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE avNNet Loading required package: ggplot2 Loading required package: lattice Fitting Repeat 1 # weights: 103 initial value 96.165035 final value 94.052910 converged Fitting Repeat 2 # weights: 103 initial value 102.922619 final value 94.032967 converged Fitting Repeat 3 # weights: 103 initial value 102.554525 final value 93.890110 converged Fitting Repeat 4 # weights: 103 initial value 100.704476 final value 94.052910 converged Fitting Repeat 5 # weights: 103 initial value 100.408411 final value 94.052910 converged Fitting Repeat 1 # weights: 305 initial value 101.082058 iter 10 value 93.159794 iter 20 value 93.080000 iter 30 value 92.551079 iter 40 value 92.550875 final value 92.550869 converged Fitting Repeat 2 # weights: 305 initial value 95.941879 iter 10 value 85.425812 iter 20 value 85.194570 iter 30 value 85.155839 final value 85.155772 converged Fitting Repeat 3 # weights: 305 initial value 95.853557 iter 10 value 87.498981 final value 87.150800 converged Fitting Repeat 4 # weights: 305 initial value 104.169630 final value 93.604520 converged Fitting Repeat 5 # weights: 305 initial value 95.699372 final value 94.052910 converged Fitting Repeat 1 # weights: 507 initial value 106.788046 final value 94.032967 converged Fitting Repeat 2 # weights: 507 initial value 102.606497 final value 94.052910 converged Fitting Repeat 3 # weights: 507 initial value 97.788569 iter 10 value 91.408529 iter 20 value 84.434755 iter 30 value 83.856133 iter 40 value 83.853646 final value 83.853641 converged Fitting Repeat 4 # weights: 507 initial value 98.560655 iter 10 value 93.406503 final value 93.328073 converged Fitting Repeat 5 # weights: 507 initial value 100.624761 final value 94.032967 converged Fitting Repeat 1 # weights: 103 initial value 97.328666 iter 10 value 94.066089 iter 20 value 93.871277 iter 30 value 93.627420 iter 40 value 90.456648 iter 50 value 89.921886 iter 60 value 84.906010 iter 70 value 84.324238 iter 80 value 84.017712 iter 90 value 83.905520 iter 100 value 83.891106 final value 83.891106 stopped after 100 iterations Fitting Repeat 2 # weights: 103 initial value 104.890947 iter 10 value 94.086009 iter 20 value 94.057356 iter 30 value 93.739580 iter 40 value 92.907326 iter 50 value 90.104048 iter 60 value 85.754054 iter 70 value 85.623288 iter 80 value 85.216217 iter 90 value 84.071161 iter 100 value 83.639611 final value 83.639611 stopped after 100 iterations Fitting Repeat 3 # weights: 103 initial value 105.080364 iter 10 value 94.205315 iter 20 value 93.996718 iter 30 value 92.784134 iter 40 value 89.585924 iter 50 value 88.314363 iter 60 value 87.857564 iter 70 value 84.328528 iter 80 value 82.807761 iter 90 value 82.446296 iter 100 value 82.431047 final value 82.431047 stopped after 100 iterations Fitting Repeat 4 # weights: 103 initial value 102.749653 iter 10 value 94.082224 iter 20 value 92.874299 iter 30 value 88.514180 iter 40 value 88.267523 iter 50 value 86.521433 iter 60 value 84.758827 iter 70 value 84.682919 iter 80 value 84.228707 iter 90 value 83.921155 final value 83.891106 converged Fitting Repeat 5 # weights: 103 initial value 98.616885 iter 10 value 93.987351 iter 20 value 87.407045 iter 30 value 85.184186 iter 40 value 84.317259 iter 50 value 84.059507 iter 60 value 83.329068 iter 70 value 83.121715 iter 80 value 82.589103 iter 90 value 82.503703 iter 100 value 82.282253 final value 82.282253 stopped after 100 iterations Fitting Repeat 1 # weights: 305 initial value 107.642474 iter 10 value 93.981885 iter 20 value 87.286168 iter 30 value 86.000218 iter 40 value 84.697055 iter 50 value 82.572387 iter 60 value 82.258597 iter 70 value 81.895474 iter 80 value 81.365490 iter 90 value 81.022865 iter 100 value 80.699830 final value 80.699830 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 110.407829 iter 10 value 95.069159 iter 20 value 91.997178 iter 30 value 85.185531 iter 40 value 84.782061 iter 50 value 84.549411 iter 60 value 84.029330 iter 70 value 82.467856 iter 80 value 81.481075 iter 90 value 81.209060 iter 100 value 81.085003 final value 81.085003 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 101.174550 iter 10 value 87.174733 iter 20 value 86.034981 iter 30 value 84.963248 iter 40 value 83.734481 iter 50 value 82.481939 iter 60 value 81.783131 iter 70 value 81.278850 iter 80 value 80.926168 iter 90 value 80.838541 iter 100 value 80.766411 final value 80.766411 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 102.066927 iter 10 value 94.183534 iter 20 value 90.491544 iter 30 value 85.110607 iter 40 value 84.096512 iter 50 value 83.744922 iter 60 value 83.693445 iter 70 value 83.536185 iter 80 value 82.120408 iter 90 value 81.711460 iter 100 value 81.593619 final value 81.593619 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 102.095838 iter 10 value 92.989463 iter 20 value 86.823460 iter 30 value 84.498821 iter 40 value 84.100361 iter 50 value 83.756596 iter 60 value 83.315651 iter 70 value 83.005158 iter 80 value 82.316275 iter 90 value 82.120324 iter 100 value 82.020985 final value 82.020985 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 104.412812 iter 10 value 93.791071 iter 20 value 90.510019 iter 30 value 84.952452 iter 40 value 83.807630 iter 50 value 82.321728 iter 60 value 81.575998 iter 70 value 81.382949 iter 80 value 80.370241 iter 90 value 80.171674 iter 100 value 80.137957 final value 80.137957 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 105.678441 iter 10 value 97.339325 iter 20 value 88.619853 iter 30 value 84.989689 iter 40 value 82.067812 iter 50 value 81.289930 iter 60 value 81.121968 iter 70 value 80.991719 iter 80 value 80.673583 iter 90 value 80.534410 iter 100 value 80.433138 final value 80.433138 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 108.817609 iter 10 value 94.053579 iter 20 value 87.203529 iter 30 value 85.322826 iter 40 value 84.730219 iter 50 value 84.289034 iter 60 value 82.497622 iter 70 value 81.311302 iter 80 value 80.965781 iter 90 value 80.889090 iter 100 value 80.769650 final value 80.769650 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 108.819611 iter 10 value 94.376766 iter 20 value 88.942707 iter 30 value 84.292855 iter 40 value 82.185413 iter 50 value 81.347989 iter 60 value 80.718019 iter 70 value 80.577491 iter 80 value 80.510483 iter 90 value 80.438850 iter 100 value 80.303940 final value 80.303940 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 118.361716 iter 10 value 94.341989 iter 20 value 89.469129 iter 30 value 85.618013 iter 40 value 83.609381 iter 50 value 81.477234 iter 60 value 81.043297 iter 70 value 81.007922 iter 80 value 80.919054 iter 90 value 80.863501 iter 100 value 80.828367 final value 80.828367 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 122.421191 final value 94.054308 converged Fitting Repeat 2 # weights: 103 initial value 97.874557 final value 94.054571 converged Fitting Repeat 3 # weights: 103 initial value 97.591702 final value 94.054612 converged Fitting Repeat 4 # weights: 103 initial value 100.578128 final value 94.054380 converged Fitting Repeat 5 # weights: 103 initial value 94.772449 final value 94.055299 converged Fitting Repeat 1 # weights: 305 initial value 113.072920 iter 10 value 92.792861 iter 20 value 91.387129 iter 30 value 91.386467 iter 30 value 91.386467 iter 30 value 91.386467 final value 91.386467 converged Fitting Repeat 2 # weights: 305 initial value 100.820352 iter 10 value 94.107533 iter 20 value 88.908366 iter 30 value 85.407658 iter 40 value 85.112544 iter 50 value 85.106976 iter 60 value 85.076729 final value 85.076176 converged Fitting Repeat 3 # weights: 305 initial value 106.259532 iter 10 value 94.014989 iter 20 value 94.011059 final value 94.010851 converged Fitting Repeat 4 # weights: 305 initial value 94.677202 iter 10 value 94.057452 iter 20 value 93.420403 iter 30 value 88.208778 iter 40 value 85.872307 iter 50 value 84.026140 iter 60 value 83.377893 iter 70 value 81.842725 iter 80 value 81.812080 iter 90 value 81.808281 iter 100 value 81.806735 final value 81.806735 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 92.547525 iter 10 value 89.479737 iter 20 value 88.802059 iter 30 value 87.154995 iter 40 value 85.260475 iter 50 value 84.269771 iter 60 value 83.597553 iter 70 value 83.596878 iter 80 value 83.594751 iter 80 value 83.594751 iter 80 value 83.594751 final value 83.594751 converged Fitting Repeat 1 # weights: 507 initial value 108.804211 iter 10 value 94.036196 iter 20 value 94.032404 iter 30 value 91.816895 iter 40 value 85.555758 iter 50 value 84.708647 iter 60 value 82.656566 iter 70 value 82.261397 iter 80 value 82.255274 iter 90 value 82.254940 iter 100 value 82.254829 final value 82.254829 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 102.275979 iter 10 value 94.134667 iter 20 value 93.624296 iter 30 value 93.495740 iter 40 value 93.120336 iter 50 value 85.261665 iter 60 value 85.258682 iter 70 value 85.254339 iter 80 value 83.419701 iter 90 value 80.384922 iter 100 value 80.114463 final value 80.114463 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 107.041527 iter 10 value 93.511736 iter 20 value 84.314130 final value 84.310489 converged Fitting Repeat 4 # weights: 507 initial value 103.054476 iter 10 value 94.060189 iter 20 value 93.643776 iter 30 value 93.480705 iter 40 value 87.525692 iter 50 value 84.250979 iter 60 value 83.710133 iter 70 value 83.266756 iter 80 value 82.286942 iter 90 value 82.253938 iter 100 value 82.252660 final value 82.252660 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 97.629669 final value 94.041191 converged Fitting Repeat 1 # weights: 103 initial value 94.516238 final value 94.484211 converged Fitting Repeat 2 # weights: 103 initial value 103.894608 final value 94.484211 converged Fitting Repeat 3 # weights: 103 initial value 98.649534 final value 94.484211 converged Fitting Repeat 4 # weights: 103 initial value 102.862434 final value 94.484137 converged Fitting Repeat 5 # weights: 103 initial value 94.605463 final value 94.484211 converged Fitting Repeat 1 # weights: 305 initial value 107.296328 final value 94.484211 converged Fitting Repeat 2 # weights: 305 initial value 107.991829 final value 94.484211 converged Fitting Repeat 3 # weights: 305 initial value 110.931128 iter 10 value 93.175524 iter 20 value 85.593531 iter 30 value 85.484906 final value 85.484692 converged Fitting Repeat 4 # weights: 305 initial value 106.228409 final value 94.466823 converged Fitting Repeat 5 # weights: 305 initial value 104.381185 final value 94.484211 converged Fitting Repeat 1 # weights: 507 initial value 121.378647 iter 10 value 91.077887 iter 20 value 87.400819 iter 30 value 87.389563 final value 87.389291 converged Fitting Repeat 2 # weights: 507 initial value 103.561245 final value 94.484137 converged Fitting Repeat 3 # weights: 507 initial value 103.595088 final value 94.466823 converged Fitting Repeat 4 # weights: 507 initial value 108.157495 final value 94.466823 converged Fitting Repeat 5 # weights: 507 initial value 101.907415 final value 94.466823 converged Fitting Repeat 1 # weights: 103 initial value 106.942427 iter 10 value 94.466655 iter 20 value 93.946596 iter 30 value 85.430602 iter 40 value 84.284972 iter 50 value 84.082303 iter 60 value 83.793989 iter 70 value 82.377065 iter 80 value 82.083402 iter 90 value 81.525556 final value 81.459276 converged Fitting Repeat 2 # weights: 103 initial value 101.193203 iter 10 value 90.367906 iter 20 value 85.674975 iter 30 value 85.102810 iter 40 value 84.666688 iter 50 value 84.129597 iter 60 value 83.865147 final value 83.863466 converged Fitting Repeat 3 # weights: 103 initial value 110.897126 iter 10 value 94.383734 iter 20 value 92.935198 iter 30 value 90.659255 iter 40 value 90.601599 iter 50 value 90.413111 iter 60 value 90.312513 iter 70 value 90.291468 final value 90.291451 converged Fitting Repeat 4 # weights: 103 initial value 98.411758 iter 10 value 94.523945 iter 20 value 94.489155 iter 30 value 88.891932 iter 40 value 86.815620 iter 50 value 83.404083 iter 60 value 82.614349 iter 70 value 82.144583 iter 80 value 81.964954 iter 90 value 81.887569 iter 100 value 81.466720 final value 81.466720 stopped after 100 iterations Fitting Repeat 5 # weights: 103 initial value 97.623075 iter 10 value 94.479852 iter 20 value 91.930538 iter 30 value 87.935365 iter 40 value 86.710665 iter 50 value 85.311566 iter 60 value 84.793981 iter 70 value 84.732388 final value 84.732368 converged Fitting Repeat 1 # weights: 305 initial value 102.500119 iter 10 value 94.464133 iter 20 value 88.543376 iter 30 value 85.920211 iter 40 value 84.284164 iter 50 value 83.383514 iter 60 value 82.711791 iter 70 value 81.805868 iter 80 value 81.700442 iter 90 value 81.669233 iter 100 value 81.586130 final value 81.586130 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 102.949880 iter 10 value 94.878604 iter 20 value 92.314529 iter 30 value 90.763476 iter 40 value 86.117264 iter 50 value 82.962825 iter 60 value 82.030536 iter 70 value 81.183523 iter 80 value 80.791226 iter 90 value 80.666270 iter 100 value 80.333113 final value 80.333113 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 105.090552 iter 10 value 94.477692 iter 20 value 90.449090 iter 30 value 85.102174 iter 40 value 82.278054 iter 50 value 81.777303 iter 60 value 81.385746 iter 70 value 81.121421 iter 80 value 80.774916 iter 90 value 80.125669 iter 100 value 79.831514 final value 79.831514 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 106.570538 iter 10 value 94.384360 iter 20 value 86.690782 iter 30 value 85.405627 iter 40 value 84.702563 iter 50 value 83.262762 iter 60 value 82.384721 iter 70 value 81.889894 iter 80 value 81.622310 iter 90 value 81.210079 iter 100 value 81.055498 final value 81.055498 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 111.224029 iter 10 value 94.391205 iter 20 value 85.716708 iter 30 value 85.069787 iter 40 value 83.992341 iter 50 value 83.629536 iter 60 value 83.139290 iter 70 value 82.353907 iter 80 value 81.762519 iter 90 value 81.421194 iter 100 value 81.224739 final value 81.224739 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 103.067730 iter 10 value 94.008690 iter 20 value 91.333177 iter 30 value 87.757632 iter 40 value 83.628539 iter 50 value 83.207819 iter 60 value 82.591565 iter 70 value 81.564763 iter 80 value 80.579667 iter 90 value 80.239518 iter 100 value 80.073601 final value 80.073601 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 116.173150 iter 10 value 94.475754 iter 20 value 89.256420 iter 30 value 86.294820 iter 40 value 84.310338 iter 50 value 83.770385 iter 60 value 83.342082 iter 70 value 82.988236 iter 80 value 82.350704 iter 90 value 81.393759 iter 100 value 80.174356 final value 80.174356 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 119.551268 iter 10 value 94.410835 iter 20 value 90.973241 iter 30 value 86.654958 iter 40 value 85.183876 iter 50 value 84.455188 iter 60 value 82.812043 iter 70 value 80.225599 iter 80 value 79.727464 iter 90 value 79.551453 iter 100 value 79.438673 final value 79.438673 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 109.849142 iter 10 value 95.049337 iter 20 value 94.541506 iter 30 value 93.690134 iter 40 value 90.664230 iter 50 value 90.338663 iter 60 value 88.878540 iter 70 value 84.203308 iter 80 value 82.904483 iter 90 value 82.608282 iter 100 value 82.471340 final value 82.471340 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 104.190382 iter 10 value 95.293357 iter 20 value 85.587439 iter 30 value 82.682616 iter 40 value 80.372092 iter 50 value 80.203048 iter 60 value 80.045630 iter 70 value 79.829335 iter 80 value 79.712845 iter 90 value 79.605763 iter 100 value 79.547842 final value 79.547842 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 95.325444 iter 10 value 94.485719 iter 20 value 94.484249 iter 30 value 94.335328 iter 40 value 85.689111 final value 85.121179 converged Fitting Repeat 2 # weights: 103 initial value 96.250694 final value 94.486223 converged Fitting Repeat 3 # weights: 103 initial value 95.406452 final value 94.485957 converged Fitting Repeat 4 # weights: 103 initial value 99.258688 final value 94.485704 converged Fitting Repeat 5 # weights: 103 initial value 95.325533 final value 94.485883 converged Fitting Repeat 1 # weights: 305 initial value 96.547046 iter 10 value 93.475925 iter 20 value 93.411938 iter 30 value 93.003858 iter 40 value 92.885485 iter 50 value 92.885372 iter 60 value 92.317697 iter 70 value 91.878186 final value 91.877912 converged Fitting Repeat 2 # weights: 305 initial value 96.613779 iter 10 value 93.810904 iter 20 value 93.779286 iter 30 value 93.209344 iter 40 value 93.168885 iter 50 value 93.165443 iter 60 value 93.164765 iter 70 value 92.579394 iter 80 value 92.577488 iter 90 value 92.192101 iter 100 value 92.128082 final value 92.128082 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 97.934510 iter 10 value 94.471903 iter 20 value 93.638768 iter 30 value 85.365317 final value 85.182376 converged Fitting Repeat 4 # weights: 305 initial value 95.046617 iter 10 value 94.489156 iter 20 value 94.484223 iter 30 value 90.685541 iter 40 value 84.637646 iter 50 value 84.496824 iter 60 value 84.281570 iter 70 value 82.514588 iter 80 value 82.513966 iter 90 value 82.511821 iter 100 value 82.508336 final value 82.508336 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 102.594254 iter 10 value 94.488310 iter 20 value 93.472838 iter 30 value 87.592401 final value 87.592371 converged Fitting Repeat 1 # weights: 507 initial value 102.076805 iter 10 value 94.475888 iter 20 value 94.474367 iter 30 value 94.471990 iter 40 value 88.680552 iter 50 value 85.258049 iter 60 value 84.512808 final value 84.511705 converged Fitting Repeat 2 # weights: 507 initial value 108.128758 iter 10 value 94.491893 iter 20 value 94.383278 iter 30 value 88.500632 iter 40 value 88.161333 iter 50 value 86.312766 iter 60 value 83.680925 iter 70 value 83.223907 iter 80 value 82.243614 iter 90 value 81.785636 iter 100 value 81.350650 final value 81.350650 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 99.356157 iter 10 value 94.492496 iter 20 value 94.448590 iter 30 value 89.092644 iter 40 value 84.988220 iter 50 value 80.549116 iter 60 value 78.967391 iter 70 value 78.619769 iter 80 value 78.500713 iter 90 value 77.978045 iter 100 value 77.971173 final value 77.971173 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 96.138881 iter 10 value 91.951601 iter 20 value 91.883908 iter 30 value 91.813111 iter 40 value 91.811900 iter 50 value 91.655354 iter 60 value 91.477412 iter 70 value 91.474140 iter 80 value 91.471940 iter 90 value 91.308065 iter 100 value 91.057075 final value 91.057075 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 94.891013 iter 10 value 94.490625 iter 20 value 94.483884 iter 30 value 94.029348 iter 40 value 90.901774 iter 50 value 90.848938 iter 60 value 90.839530 iter 70 value 90.791318 iter 80 value 90.618840 iter 90 value 90.457763 iter 100 value 90.419874 final value 90.419874 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 100.151398 final value 94.291892 converged Fitting Repeat 2 # weights: 103 initial value 95.853303 final value 94.484211 converged Fitting Repeat 3 # weights: 103 initial value 101.305123 final value 94.484211 converged Fitting Repeat 4 # weights: 103 initial value 100.980999 final value 94.484211 converged Fitting Repeat 5 # weights: 103 initial value 98.419893 final value 94.484211 converged Fitting Repeat 1 # weights: 305 initial value 101.005931 final value 94.484211 converged Fitting Repeat 2 # weights: 305 initial value 101.019953 iter 10 value 93.754644 iter 20 value 93.584573 iter 30 value 93.584204 final value 93.584197 converged Fitting Repeat 3 # weights: 305 initial value 106.247412 iter 10 value 93.889845 iter 20 value 92.803720 iter 30 value 92.739811 iter 40 value 92.739486 final value 92.739340 converged Fitting Repeat 4 # weights: 305 initial value 100.851438 final value 94.484211 converged Fitting Repeat 5 # weights: 305 initial value 103.382626 final value 94.291892 converged Fitting Repeat 1 # weights: 507 initial value 99.067809 final value 94.484211 converged Fitting Repeat 2 # weights: 507 initial value 95.132467 final value 93.833616 converged Fitting Repeat 3 # weights: 507 initial value 110.478512 iter 10 value 91.585015 iter 20 value 86.456006 iter 30 value 86.088471 iter 40 value 84.352985 iter 50 value 84.006261 iter 60 value 83.999188 iter 70 value 83.998986 final value 83.998969 converged Fitting Repeat 4 # weights: 507 initial value 136.040388 final value 94.484211 converged Fitting Repeat 5 # weights: 507 initial value 100.010788 final value 94.291892 converged Fitting Repeat 1 # weights: 103 initial value 101.107933 iter 10 value 94.486459 iter 20 value 94.326514 iter 30 value 92.971944 iter 40 value 86.738481 iter 50 value 84.909097 iter 60 value 84.283477 iter 70 value 83.860537 iter 80 value 83.777780 final value 83.777756 converged Fitting Repeat 2 # weights: 103 initial value 104.938902 iter 10 value 92.758021 iter 20 value 92.114876 iter 30 value 92.063270 iter 40 value 92.062438 final value 92.062437 converged Fitting Repeat 3 # weights: 103 initial value 102.555256 iter 10 value 94.385825 iter 20 value 94.051841 iter 30 value 93.091009 iter 40 value 86.581295 iter 50 value 85.686996 iter 60 value 84.503360 iter 70 value 84.286437 iter 80 value 83.818425 iter 90 value 83.746971 final value 83.746965 converged Fitting Repeat 4 # weights: 103 initial value 102.101433 iter 10 value 94.358634 iter 20 value 90.302420 iter 30 value 88.519786 iter 40 value 85.855249 iter 50 value 84.860682 iter 60 value 84.526399 iter 70 value 84.322124 iter 80 value 83.917936 iter 90 value 82.426053 iter 100 value 82.152376 final value 82.152376 stopped after 100 iterations Fitting Repeat 5 # weights: 103 initial value 107.092807 iter 10 value 94.488495 iter 20 value 94.341823 iter 30 value 86.832781 iter 40 value 85.701486 iter 50 value 84.485061 iter 60 value 84.304915 iter 70 value 84.292493 iter 80 value 84.292193 final value 84.291796 converged Fitting Repeat 1 # weights: 305 initial value 106.721111 iter 10 value 94.430962 iter 20 value 92.046425 iter 30 value 87.932911 iter 40 value 86.033225 iter 50 value 85.686338 iter 60 value 85.498365 iter 70 value 85.040086 iter 80 value 84.956633 iter 90 value 84.647457 iter 100 value 82.453173 final value 82.453173 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 99.639165 iter 10 value 94.513373 iter 20 value 92.414319 iter 30 value 90.071475 iter 40 value 87.887154 iter 50 value 86.910879 iter 60 value 85.463902 iter 70 value 85.004161 iter 80 value 84.621514 iter 90 value 83.651058 iter 100 value 81.937592 final value 81.937592 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 100.105466 iter 10 value 94.390188 iter 20 value 90.779238 iter 30 value 86.445236 iter 40 value 84.049381 iter 50 value 82.211559 iter 60 value 81.994616 iter 70 value 81.368206 iter 80 value 80.410855 iter 90 value 79.997561 iter 100 value 79.912113 final value 79.912113 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 111.593684 iter 10 value 94.413529 iter 20 value 90.695742 iter 30 value 86.564612 iter 40 value 85.287057 iter 50 value 84.976493 iter 60 value 84.614745 iter 70 value 83.835713 iter 80 value 83.318672 iter 90 value 82.141546 iter 100 value 80.972305 final value 80.972305 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 117.832185 iter 10 value 94.159995 iter 20 value 88.721189 iter 30 value 84.646598 iter 40 value 82.642639 iter 50 value 81.618379 iter 60 value 80.995602 iter 70 value 80.398726 iter 80 value 80.305652 iter 90 value 80.089640 iter 100 value 79.942327 final value 79.942327 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 109.048948 iter 10 value 94.240824 iter 20 value 87.692225 iter 30 value 86.579513 iter 40 value 83.848719 iter 50 value 82.595438 iter 60 value 82.052979 iter 70 value 81.600980 iter 80 value 81.366481 iter 90 value 81.139771 iter 100 value 80.823240 final value 80.823240 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 111.914545 iter 10 value 94.467094 iter 20 value 88.015067 iter 30 value 86.779711 iter 40 value 84.875772 iter 50 value 82.613214 iter 60 value 81.819892 iter 70 value 81.064917 iter 80 value 80.845769 iter 90 value 80.633811 iter 100 value 80.436587 final value 80.436587 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 111.311172 iter 10 value 94.480518 iter 20 value 91.067027 iter 30 value 90.052827 iter 40 value 84.514885 iter 50 value 83.754818 iter 60 value 82.311084 iter 70 value 81.328712 iter 80 value 80.721444 iter 90 value 80.553748 iter 100 value 80.526906 final value 80.526906 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 117.096609 iter 10 value 95.703242 iter 20 value 93.465206 iter 30 value 88.097746 iter 40 value 86.569982 iter 50 value 85.265199 iter 60 value 83.736511 iter 70 value 81.938452 iter 80 value 81.306760 iter 90 value 81.052326 iter 100 value 80.895041 final value 80.895041 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 117.943770 iter 10 value 94.063907 iter 20 value 87.677267 iter 30 value 86.341465 iter 40 value 83.938426 iter 50 value 82.481592 iter 60 value 81.679014 iter 70 value 81.199647 iter 80 value 81.055897 iter 90 value 80.858608 iter 100 value 80.426366 final value 80.426366 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 99.175921 iter 10 value 94.485683 iter 20 value 94.484238 final value 94.484215 converged Fitting Repeat 2 # weights: 103 initial value 100.322034 final value 94.485763 converged Fitting Repeat 3 # weights: 103 initial value 98.794182 final value 94.486057 converged Fitting Repeat 4 # weights: 103 initial value 115.229073 final value 94.485911 converged Fitting Repeat 5 # weights: 103 initial value 95.672664 iter 10 value 94.486091 iter 20 value 94.484226 iter 30 value 93.824972 iter 40 value 92.286343 iter 50 value 91.913660 iter 50 value 91.913659 iter 50 value 91.913658 final value 91.913658 converged Fitting Repeat 1 # weights: 305 initial value 99.547187 iter 10 value 94.483484 iter 20 value 94.280494 iter 30 value 94.276961 iter 40 value 93.976845 iter 50 value 93.836285 final value 93.834329 converged Fitting Repeat 2 # weights: 305 initial value 96.279987 iter 10 value 94.296462 iter 20 value 94.292667 final value 94.292152 converged Fitting Repeat 3 # weights: 305 initial value 109.759446 iter 10 value 94.488811 iter 20 value 94.484225 iter 30 value 94.187267 iter 40 value 87.050825 iter 50 value 86.961207 iter 60 value 86.957535 iter 70 value 86.248390 iter 80 value 85.917132 iter 90 value 85.917047 final value 85.917015 converged Fitting Repeat 4 # weights: 305 initial value 98.523091 iter 10 value 94.489333 iter 20 value 94.023135 iter 30 value 86.371759 iter 40 value 86.296628 iter 50 value 86.294595 final value 86.294297 converged Fitting Repeat 5 # weights: 305 initial value 108.236458 iter 10 value 94.099699 iter 20 value 94.096480 iter 30 value 94.095100 iter 40 value 93.940757 iter 50 value 85.489199 iter 60 value 84.050893 iter 70 value 83.457650 iter 80 value 83.392226 iter 90 value 83.281459 iter 100 value 83.232486 final value 83.232486 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 119.458358 iter 10 value 94.769289 iter 20 value 93.835580 iter 30 value 93.833660 iter 40 value 91.406657 iter 50 value 91.071320 iter 60 value 91.071068 iter 70 value 81.949281 iter 80 value 81.584283 iter 90 value 81.129376 iter 100 value 80.329121 final value 80.329121 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 98.346072 iter 10 value 94.492650 iter 20 value 94.425813 iter 30 value 89.737373 iter 40 value 86.458989 iter 50 value 85.200954 iter 60 value 85.133757 iter 70 value 82.082389 iter 80 value 82.012734 iter 90 value 82.007854 iter 100 value 81.916968 final value 81.916968 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 94.981354 iter 10 value 94.298092 iter 20 value 93.634977 iter 30 value 92.511111 iter 40 value 91.906380 iter 50 value 91.758695 iter 60 value 91.758323 final value 91.758322 converged Fitting Repeat 4 # weights: 507 initial value 108.160218 iter 10 value 94.300093 iter 20 value 94.292625 final value 94.292324 converged Fitting Repeat 5 # weights: 507 initial value 120.053022 iter 10 value 94.300901 iter 20 value 94.278135 iter 30 value 93.223409 iter 40 value 86.751601 iter 50 value 85.901849 iter 60 value 84.343234 iter 70 value 84.285879 iter 70 value 84.285878 iter 70 value 84.285878 final value 84.285878 converged Fitting Repeat 1 # weights: 103 initial value 112.076522 final value 94.484211 converged Fitting Repeat 2 # weights: 103 initial value 99.418322 final value 94.484211 converged Fitting Repeat 3 # weights: 103 initial value 95.728278 final value 94.484211 converged Fitting Repeat 4 # weights: 103 initial value 98.585739 final value 94.484211 converged Fitting Repeat 5 # weights: 103 initial value 96.447064 final value 94.484211 converged Fitting Repeat 1 # weights: 305 initial value 102.691824 final value 94.484211 converged Fitting Repeat 2 # weights: 305 initial value 102.177088 iter 10 value 93.394931 final value 93.394928 converged Fitting Repeat 3 # weights: 305 initial value 100.393309 final value 94.484211 converged Fitting Repeat 4 # weights: 305 initial value 106.955048 final value 94.484211 converged Fitting Repeat 5 # weights: 305 initial value 97.547769 iter 10 value 93.394935 final value 93.394928 converged Fitting Repeat 1 # weights: 507 initial value 98.136902 final value 94.484211 converged Fitting Repeat 2 # weights: 507 initial value 109.792279 iter 10 value 93.484047 iter 20 value 91.212173 final value 91.212122 converged Fitting Repeat 3 # weights: 507 initial value 94.966568 iter 10 value 93.394928 iter 10 value 93.394928 iter 10 value 93.394928 final value 93.394928 converged Fitting Repeat 4 # weights: 507 initial value 98.861378 final value 94.484211 converged Fitting Repeat 5 # weights: 507 initial value 124.973918 iter 10 value 93.394951 final value 93.394928 converged Fitting Repeat 1 # weights: 103 initial value 101.156737 iter 10 value 94.494321 iter 20 value 93.938144 iter 30 value 93.711227 iter 40 value 93.311477 iter 50 value 88.403841 iter 60 value 84.636251 iter 70 value 83.391080 iter 80 value 81.898417 iter 90 value 81.329916 iter 100 value 80.926975 final value 80.926975 stopped after 100 iterations Fitting Repeat 2 # weights: 103 initial value 99.662012 iter 10 value 94.542223 iter 20 value 94.386620 iter 30 value 85.016891 iter 40 value 84.049137 iter 50 value 83.652025 iter 60 value 83.163365 iter 70 value 82.926362 iter 80 value 82.895021 iter 90 value 82.880253 iter 100 value 82.877220 final value 82.877220 stopped after 100 iterations Fitting Repeat 3 # weights: 103 initial value 99.699705 iter 10 value 94.362819 iter 20 value 93.133765 iter 30 value 91.583531 iter 40 value 84.422129 iter 50 value 83.893483 iter 60 value 82.704486 iter 70 value 81.255539 iter 80 value 80.879024 iter 90 value 80.719698 iter 100 value 80.706332 final value 80.706332 stopped after 100 iterations Fitting Repeat 4 # weights: 103 initial value 96.520499 iter 10 value 94.498492 iter 20 value 91.932660 iter 30 value 87.695259 iter 40 value 86.961559 iter 50 value 86.679989 iter 60 value 86.661244 iter 70 value 86.650501 final value 86.650295 converged Fitting Repeat 5 # weights: 103 initial value 97.573643 iter 10 value 94.611292 iter 20 value 92.575761 iter 30 value 84.051275 iter 40 value 83.244520 iter 50 value 82.762913 iter 60 value 82.509490 iter 70 value 82.433688 iter 80 value 82.422017 final value 82.422009 converged Fitting Repeat 1 # weights: 305 initial value 101.118424 iter 10 value 93.404416 iter 20 value 86.312780 iter 30 value 85.185961 iter 40 value 83.400019 iter 50 value 82.527826 iter 60 value 82.378691 iter 70 value 82.241290 iter 80 value 81.522555 iter 90 value 80.234008 iter 100 value 80.198395 final value 80.198395 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 114.693398 iter 10 value 94.990475 iter 20 value 93.666887 iter 30 value 93.487499 iter 40 value 87.983181 iter 50 value 85.879725 iter 60 value 85.343731 iter 70 value 84.968871 iter 80 value 84.771128 iter 90 value 84.073225 iter 100 value 83.035658 final value 83.035658 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 100.157869 iter 10 value 93.869655 iter 20 value 91.663393 iter 30 value 87.640328 iter 40 value 83.407829 iter 50 value 82.073702 iter 60 value 81.240564 iter 70 value 80.752565 iter 80 value 79.750845 iter 90 value 79.557282 iter 100 value 79.348756 final value 79.348756 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 104.522501 iter 10 value 94.039912 iter 20 value 93.641340 iter 30 value 91.038109 iter 40 value 84.448382 iter 50 value 83.471782 iter 60 value 83.088724 iter 70 value 82.636463 iter 80 value 82.179109 iter 90 value 82.086306 iter 100 value 81.929284 final value 81.929284 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 99.814532 iter 10 value 91.458693 iter 20 value 87.201694 iter 30 value 83.474352 iter 40 value 83.291918 iter 50 value 83.199500 iter 60 value 82.781612 iter 70 value 82.198689 iter 80 value 82.087936 iter 90 value 80.883091 iter 100 value 79.943635 final value 79.943635 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 114.077568 iter 10 value 94.619996 iter 20 value 92.127631 iter 30 value 86.988097 iter 40 value 82.452356 iter 50 value 80.157807 iter 60 value 79.928087 iter 70 value 79.726846 iter 80 value 79.646084 iter 90 value 79.633205 iter 100 value 79.624633 final value 79.624633 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 105.956623 iter 10 value 93.981258 iter 20 value 92.077551 iter 30 value 84.980645 iter 40 value 84.503478 iter 50 value 82.887606 iter 60 value 80.725610 iter 70 value 80.393218 iter 80 value 79.570867 iter 90 value 79.000251 iter 100 value 78.925886 final value 78.925886 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 131.440789 iter 10 value 94.557893 iter 20 value 89.509960 iter 30 value 83.748041 iter 40 value 83.160684 iter 50 value 82.794982 iter 60 value 82.133112 iter 70 value 80.234826 iter 80 value 79.518593 iter 90 value 79.418695 iter 100 value 79.281452 final value 79.281452 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 108.216462 iter 10 value 94.189768 iter 20 value 94.017573 iter 30 value 93.366621 iter 40 value 93.287095 iter 50 value 92.677942 iter 60 value 87.282050 iter 70 value 84.422770 iter 80 value 83.606522 iter 90 value 81.689951 iter 100 value 80.920879 final value 80.920879 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 112.903006 iter 10 value 94.498483 iter 20 value 88.037174 iter 30 value 82.620622 iter 40 value 81.707880 iter 50 value 81.365123 iter 60 value 80.795223 iter 70 value 80.446430 iter 80 value 80.190566 iter 90 value 79.454743 iter 100 value 79.186274 final value 79.186274 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 98.859804 iter 10 value 94.485862 iter 20 value 94.484228 iter 20 value 94.484227 iter 20 value 94.484227 final value 94.484227 converged Fitting Repeat 2 # weights: 103 initial value 100.250512 iter 10 value 94.563966 iter 20 value 94.551687 iter 30 value 94.486299 iter 40 value 92.293992 iter 50 value 92.281038 iter 60 value 92.184699 iter 70 value 92.083307 iter 80 value 92.082965 iter 90 value 92.081669 iter 90 value 92.081668 iter 90 value 92.081668 final value 92.081668 converged Fitting Repeat 3 # weights: 103 initial value 100.305913 iter 10 value 86.383491 iter 20 value 85.650557 iter 30 value 85.612740 iter 40 value 85.166162 iter 50 value 85.147349 final value 85.147312 converged Fitting Repeat 4 # weights: 103 initial value 97.595739 final value 94.485746 converged Fitting Repeat 5 # weights: 103 initial value 100.977824 iter 10 value 93.397732 iter 20 value 93.397450 iter 30 value 93.167529 iter 40 value 82.904634 iter 50 value 82.901563 iter 60 value 82.867929 final value 82.836466 converged Fitting Repeat 1 # weights: 305 initial value 107.223971 iter 10 value 94.488808 iter 20 value 94.484429 iter 30 value 94.310762 iter 40 value 87.042348 iter 50 value 82.558937 iter 60 value 82.396113 iter 70 value 82.395553 iter 80 value 82.306822 iter 90 value 81.508140 iter 100 value 81.268889 final value 81.268889 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 95.232585 iter 10 value 93.401017 iter 20 value 93.398038 iter 30 value 93.168286 iter 40 value 93.103335 iter 50 value 91.646697 iter 60 value 90.883555 iter 70 value 90.867253 final value 90.866533 converged Fitting Repeat 3 # weights: 305 initial value 99.236635 iter 10 value 94.453013 iter 20 value 94.239130 final value 94.227432 converged Fitting Repeat 4 # weights: 305 initial value 98.470167 iter 10 value 93.403893 iter 20 value 93.231842 iter 30 value 92.487707 iter 40 value 88.320081 iter 50 value 87.871257 iter 60 value 87.870432 iter 70 value 86.005393 iter 80 value 81.234511 iter 90 value 80.486681 iter 100 value 79.794872 final value 79.794872 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 106.795640 iter 10 value 94.488863 iter 20 value 94.484427 final value 94.484233 converged Fitting Repeat 1 # weights: 507 initial value 99.061071 iter 10 value 94.492691 iter 20 value 93.406986 final value 93.395574 converged Fitting Repeat 2 # weights: 507 initial value 102.688505 iter 10 value 93.403440 iter 20 value 93.396593 iter 30 value 93.382762 iter 40 value 91.610305 iter 50 value 89.172117 iter 60 value 83.425075 iter 70 value 82.919556 iter 80 value 82.771496 iter 90 value 82.513715 iter 100 value 82.492770 final value 82.492770 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 108.206656 iter 10 value 94.492399 iter 20 value 94.294066 iter 30 value 93.503666 final value 93.502242 converged Fitting Repeat 4 # weights: 507 initial value 128.465121 iter 10 value 94.493928 iter 20 value 94.485879 iter 30 value 93.396571 final value 93.396543 converged Fitting Repeat 5 # weights: 507 initial value 104.479473 iter 10 value 93.404002 iter 20 value 93.400562 iter 30 value 93.137757 iter 40 value 86.425943 iter 50 value 85.408386 iter 60 value 85.403118 iter 60 value 85.403117 iter 70 value 85.402846 final value 85.402781 converged Fitting Repeat 1 # weights: 103 initial value 97.427000 final value 94.052910 converged Fitting Repeat 2 # weights: 103 initial value 95.488217 final value 94.052910 converged Fitting Repeat 3 # weights: 103 initial value 97.655670 iter 10 value 93.582455 final value 93.582418 converged Fitting Repeat 4 # weights: 103 initial value 96.079205 final value 94.052910 converged Fitting Repeat 5 # weights: 103 initial value 98.566516 final value 94.052910 converged Fitting Repeat 1 # weights: 305 initial value 97.106042 final value 94.052910 converged Fitting Repeat 2 # weights: 305 initial value 94.663891 final value 94.052910 converged Fitting Repeat 3 # weights: 305 initial value 95.793955 final value 94.052910 converged Fitting Repeat 4 # weights: 305 initial value 110.497052 final value 92.892737 converged Fitting Repeat 5 # weights: 305 initial value 99.826784 final value 93.582418 converged Fitting Repeat 1 # weights: 507 initial value 121.871800 iter 10 value 93.680765 iter 20 value 91.065238 iter 30 value 87.830603 iter 40 value 84.045814 iter 50 value 83.724207 iter 60 value 83.717165 iter 70 value 83.715470 final value 83.715468 converged Fitting Repeat 2 # weights: 507 initial value 107.731018 iter 10 value 92.892738 iter 10 value 92.892737 iter 10 value 92.892737 final value 92.892737 converged Fitting Repeat 3 # weights: 507 initial value 99.946188 final value 94.052910 converged Fitting Repeat 4 # weights: 507 initial value 98.481530 final value 94.052830 converged Fitting Repeat 5 # weights: 507 initial value 101.046565 iter 10 value 93.326169 iter 20 value 93.282767 final value 93.282717 converged Fitting Repeat 1 # weights: 103 initial value 114.355286 iter 10 value 94.039612 iter 20 value 93.631974 iter 30 value 87.579559 iter 40 value 86.983601 iter 50 value 85.730633 iter 60 value 84.122557 iter 70 value 83.393297 iter 80 value 82.950493 iter 90 value 82.306927 iter 100 value 82.181514 final value 82.181514 stopped after 100 iterations Fitting Repeat 2 # weights: 103 initial value 96.342944 iter 10 value 93.976859 iter 20 value 91.160277 iter 30 value 90.243586 iter 40 value 85.952592 iter 50 value 82.584244 iter 60 value 82.283654 iter 70 value 82.206204 iter 80 value 82.193236 final value 82.193235 converged Fitting Repeat 3 # weights: 103 initial value 99.379219 iter 10 value 94.055623 iter 20 value 93.381314 iter 30 value 90.802057 iter 40 value 89.550360 iter 50 value 84.783937 iter 60 value 83.031575 iter 70 value 82.597009 iter 80 value 82.304682 final value 82.304193 converged Fitting Repeat 4 # weights: 103 initial value 106.704548 iter 10 value 94.047729 iter 20 value 91.279209 iter 30 value 89.952488 iter 40 value 86.930554 iter 50 value 84.583299 iter 60 value 84.499168 iter 70 value 84.337966 iter 80 value 84.285696 final value 84.285053 converged Fitting Repeat 5 # weights: 103 initial value 105.718330 iter 10 value 94.058117 iter 20 value 93.654828 iter 30 value 89.367291 iter 40 value 85.573060 iter 50 value 84.903025 iter 60 value 84.286902 iter 70 value 83.203013 iter 80 value 82.927784 iter 90 value 82.845304 iter 100 value 82.135333 final value 82.135333 stopped after 100 iterations Fitting Repeat 1 # weights: 305 initial value 103.665456 iter 10 value 93.964359 iter 20 value 88.379248 iter 30 value 86.270622 iter 40 value 84.970322 iter 50 value 82.479915 iter 60 value 81.566111 iter 70 value 81.335231 iter 80 value 81.270514 iter 90 value 81.202678 iter 100 value 81.096232 final value 81.096232 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 105.740047 iter 10 value 94.086855 iter 20 value 93.979433 iter 30 value 87.995922 iter 40 value 86.806906 iter 50 value 85.155175 iter 60 value 83.609789 iter 70 value 82.969048 iter 80 value 81.958832 iter 90 value 81.496194 iter 100 value 81.262052 final value 81.262052 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 109.716887 iter 10 value 93.647514 iter 20 value 93.398542 iter 30 value 88.531454 iter 40 value 86.664624 iter 50 value 86.524995 iter 60 value 85.990178 iter 70 value 83.291226 iter 80 value 81.970151 iter 90 value 81.417057 iter 100 value 80.855143 final value 80.855143 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 125.204553 iter 10 value 94.745767 iter 20 value 94.058465 iter 30 value 93.130051 iter 40 value 91.517956 iter 50 value 90.326721 iter 60 value 86.795276 iter 70 value 85.040192 iter 80 value 84.740256 iter 90 value 84.447952 iter 100 value 83.394043 final value 83.394043 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 99.698379 iter 10 value 94.111781 iter 20 value 93.978452 iter 30 value 93.506522 iter 40 value 89.947268 iter 50 value 83.550223 iter 60 value 82.539059 iter 70 value 82.300647 iter 80 value 82.009887 iter 90 value 81.646630 iter 100 value 81.416941 final value 81.416941 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 111.410712 iter 10 value 91.929660 iter 20 value 84.721736 iter 30 value 84.233817 iter 40 value 83.902858 iter 50 value 83.882024 iter 60 value 83.866569 iter 70 value 83.583105 iter 80 value 83.180901 iter 90 value 82.155603 iter 100 value 81.873947 final value 81.873947 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 120.495546 iter 10 value 94.385303 iter 20 value 93.589680 iter 30 value 93.517734 iter 40 value 88.601212 iter 50 value 85.097183 iter 60 value 84.735443 iter 70 value 84.324553 iter 80 value 81.705602 iter 90 value 80.650043 iter 100 value 80.359255 final value 80.359255 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 121.572074 iter 10 value 94.073178 iter 20 value 92.787243 iter 30 value 86.566397 iter 40 value 84.963599 iter 50 value 84.160958 iter 60 value 83.888639 iter 70 value 83.832234 iter 80 value 83.492740 iter 90 value 81.876020 iter 100 value 81.106665 final value 81.106665 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 116.531454 iter 10 value 94.035859 iter 20 value 85.129333 iter 30 value 84.560029 iter 40 value 84.440425 iter 50 value 83.919503 iter 60 value 83.819925 iter 70 value 83.643175 iter 80 value 83.303163 iter 90 value 81.645934 iter 100 value 80.634621 final value 80.634621 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 126.527662 iter 10 value 94.750873 iter 20 value 87.949572 iter 30 value 86.666050 iter 40 value 84.227687 iter 50 value 82.551463 iter 60 value 81.577171 iter 70 value 81.294101 iter 80 value 80.788313 iter 90 value 80.712259 iter 100 value 80.657450 final value 80.657450 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 101.921195 iter 10 value 94.054726 iter 20 value 94.052963 final value 94.052915 converged Fitting Repeat 2 # weights: 103 initial value 97.317354 final value 94.054539 converged Fitting Repeat 3 # weights: 103 initial value 94.792386 iter 10 value 92.894720 iter 20 value 92.891607 iter 30 value 88.000102 iter 40 value 83.729793 iter 50 value 83.296172 iter 60 value 82.893954 iter 70 value 82.829303 final value 82.822430 converged Fitting Repeat 4 # weights: 103 initial value 106.819019 iter 10 value 94.054616 final value 94.052925 converged Fitting Repeat 5 # weights: 103 initial value 101.187429 final value 94.054787 converged Fitting Repeat 1 # weights: 305 initial value 95.883808 iter 10 value 93.941924 iter 20 value 93.939561 iter 30 value 93.938818 iter 40 value 93.937727 iter 50 value 93.936837 iter 60 value 93.936766 iter 70 value 93.936104 iter 70 value 93.936103 iter 70 value 93.936103 final value 93.936103 converged Fitting Repeat 2 # weights: 305 initial value 98.457981 iter 10 value 94.059695 iter 20 value 94.054803 iter 30 value 93.369411 iter 40 value 91.228130 iter 50 value 91.097795 iter 60 value 91.094899 final value 91.093577 converged Fitting Repeat 3 # weights: 305 initial value 95.503616 iter 10 value 94.057917 iter 20 value 94.052936 final value 94.052912 converged Fitting Repeat 4 # weights: 305 initial value 103.247035 iter 10 value 94.057878 iter 20 value 93.995317 final value 93.582843 converged Fitting Repeat 5 # weights: 305 initial value 119.529052 iter 10 value 94.057729 iter 20 value 93.953263 iter 30 value 93.366219 final value 93.366213 converged Fitting Repeat 1 # weights: 507 initial value 100.892067 iter 10 value 93.240255 iter 20 value 93.097113 iter 30 value 92.944690 final value 92.943602 converged Fitting Repeat 2 # weights: 507 initial value 101.793934 iter 10 value 93.590703 iter 20 value 93.583073 final value 93.582726 converged Fitting Repeat 3 # weights: 507 initial value 94.174277 iter 10 value 93.591231 iter 20 value 93.584013 final value 93.583203 converged Fitting Repeat 4 # weights: 507 initial value 109.363449 iter 10 value 94.060654 iter 20 value 93.821993 iter 30 value 93.491556 iter 40 value 85.996278 iter 50 value 85.981285 iter 60 value 85.766636 iter 70 value 85.138661 iter 80 value 81.634219 iter 90 value 81.377922 iter 100 value 81.371356 final value 81.371356 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 102.144505 iter 10 value 94.061040 iter 20 value 93.998111 iter 30 value 90.443556 iter 30 value 90.443555 iter 30 value 90.443555 final value 90.443555 converged Fitting Repeat 1 # weights: 507 initial value 128.979049 iter 10 value 114.122111 iter 20 value 110.935417 iter 30 value 107.489776 iter 40 value 104.803655 iter 50 value 102.088155 iter 60 value 101.695892 iter 70 value 101.604390 iter 80 value 101.428016 iter 90 value 101.401965 iter 100 value 101.345835 final value 101.345835 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 126.521817 iter 10 value 118.428526 iter 20 value 117.553252 iter 30 value 108.902084 iter 40 value 106.363067 iter 50 value 103.892598 iter 60 value 101.631285 iter 70 value 101.189739 iter 80 value 100.692065 iter 90 value 100.476738 iter 100 value 100.390115 final value 100.390115 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 140.770732 iter 10 value 117.849287 iter 20 value 110.624124 iter 30 value 106.264441 iter 40 value 106.151348 iter 50 value 105.191494 iter 60 value 103.820843 iter 70 value 102.567587 iter 80 value 101.675975 iter 90 value 101.270472 iter 100 value 100.782984 final value 100.782984 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 142.909996 iter 10 value 117.891291 iter 20 value 113.159805 iter 30 value 109.765012 iter 40 value 107.081277 iter 50 value 105.537894 iter 60 value 103.806367 iter 70 value 102.774673 iter 80 value 101.644146 iter 90 value 101.374515 iter 100 value 101.074686 final value 101.074686 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 167.401711 iter 10 value 117.206265 iter 20 value 116.543508 iter 30 value 111.913377 iter 40 value 109.709955 iter 50 value 107.508445 iter 60 value 106.952948 iter 70 value 105.432684 iter 80 value 104.339709 iter 90 value 103.085961 iter 100 value 102.768803 final value 102.768803 stopped after 100 iterations svmRadial ranger Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases RUNIT TEST PROTOCOL -- Mon Jun 24 06:10:48 2024 *********************************************** Number of test functions: 7 Number of errors: 0 Number of failures: 0 1 Test Suite : HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures Number of test functions: 7 Number of errors: 0 Number of failures: 0 Warning messages: 1: `repeats` has no meaning for this resampling method. 2: executing %dopar% sequentially: no parallel backend registered > > > > > proc.time() user system elapsed 74.553 2.236 83.989
HPiP.Rcheck/HPiP-Ex.timings
name | user | system | elapsed | |
FSmethod | 51.116 | 1.849 | 60.971 | |
FreqInteractors | 0.507 | 0.029 | 0.637 | |
calculateAAC | 0.076 | 0.015 | 0.104 | |
calculateAutocor | 1.135 | 0.103 | 1.431 | |
calculateCTDC | 0.149 | 0.007 | 0.186 | |
calculateCTDD | 1.316 | 0.034 | 1.600 | |
calculateCTDT | 0.445 | 0.013 | 0.523 | |
calculateCTriad | 0.752 | 0.048 | 0.934 | |
calculateDC | 0.261 | 0.029 | 0.333 | |
calculateF | 0.750 | 0.025 | 0.895 | |
calculateKSAAP | 0.298 | 0.024 | 0.361 | |
calculateQD_Sm | 3.582 | 0.184 | 4.490 | |
calculateTC | 4.852 | 0.460 | 6.169 | |
calculateTC_Sm | 0.596 | 0.052 | 0.757 | |
corr_plot | 51.643 | 1.898 | 62.563 | |
enrichfindP | 0.926 | 0.088 | 15.386 | |
enrichfind_hp | 0.133 | 0.029 | 1.141 | |
enrichplot | 0.867 | 0.013 | 1.026 | |
filter_missing_values | 0.003 | 0.001 | 0.004 | |
getFASTA | 0.124 | 0.017 | 9.077 | |
getHPI | 0.001 | 0.001 | 0.002 | |
get_negativePPI | 0.004 | 0.000 | 0.004 | |
get_positivePPI | 0 | 0 | 0 | |
impute_missing_data | 0.002 | 0.001 | 0.004 | |
plotPPI | 0.137 | 0.004 | 0.144 | |
pred_ensembel | 25.407 | 0.554 | 25.550 | |
var_imp | 53.266 | 1.966 | 68.086 | |