Back to Multiple platform build/check report for BioC 3.19: simplified long |
|
This page was generated on 2024-05-31 17:03:00 -0400 (Fri, 31 May 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4753 |
kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4464 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 987/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
HPiP 1.10.0 (landing page) Matineh Rahmatbakhsh
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | OK | OK | |||||||||
To the developers/maintainers of the HPiP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: HPiP |
Version: 1.10.0 |
Command: /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings HPiP_1.10.0.tar.gz |
StartedAt: 2024-05-31 04:37:59 -0400 (Fri, 31 May 2024) |
EndedAt: 2024-05-31 04:51:36 -0400 (Fri, 31 May 2024) |
EllapsedTime: 816.8 seconds |
RetCode: 0 |
Status: OK |
CheckDir: HPiP.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings HPiP_1.10.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.19-bioc/meat/HPiP.Rcheck’ * using R version 4.4.0 (2024-04-24) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 * running under: Ubuntu 22.04.4 LTS * using session charset: UTF-8 * checking for file ‘HPiP/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘HPiP’ version ‘1.10.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘HPiP’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE License stub is invalid DCF. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE checkRd: (-1) getHPI.Rd:29: Lost braces 29 | then the Kronecker product is the code{(pm × qn)} block matrix | ^ * checking Rd metadata ... OK * checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: ‘ftrCOOL’ * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking R/sysdata.rda ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed var_imp 37.318 1.260 38.579 FSmethod 35.359 0.875 36.238 corr_plot 35.422 0.392 35.820 pred_ensembel 14.100 0.593 11.469 enrichfindP 0.498 0.052 8.737 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘runTests.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 3 NOTEs See ‘/home/biocbuild/bbs-3.19-bioc/meat/HPiP.Rcheck/00check.log’ for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.19-bioc/R/site-library’ * installing *source* package ‘HPiP’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > BiocGenerics:::testPackage('HPiP') No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE avNNet Loading required package: ggplot2 Loading required package: lattice Fitting Repeat 1 # weights: 103 initial value 97.408072 final value 94.484211 converged Fitting Repeat 2 # weights: 103 initial value 95.094338 final value 94.484211 converged Fitting Repeat 3 # weights: 103 initial value 103.118780 final value 94.484211 converged Fitting Repeat 4 # weights: 103 initial value 116.410285 final value 94.484211 converged Fitting Repeat 5 # weights: 103 initial value 112.507441 final value 94.484211 converged Fitting Repeat 1 # weights: 305 initial value 104.632986 iter 10 value 90.984552 iter 20 value 90.630443 iter 30 value 90.623388 final value 90.623378 converged Fitting Repeat 2 # weights: 305 initial value 108.840485 final value 94.484210 converged Fitting Repeat 3 # weights: 305 initial value 98.900833 final value 94.448052 converged Fitting Repeat 4 # weights: 305 initial value 95.421912 final value 94.484211 converged Fitting Repeat 5 # weights: 305 initial value 94.963784 final value 94.322898 converged Fitting Repeat 1 # weights: 507 initial value 100.848388 iter 10 value 93.714416 iter 20 value 93.586319 iter 30 value 93.397128 iter 40 value 93.397012 iter 40 value 93.397011 iter 40 value 93.397011 final value 93.397011 converged Fitting Repeat 2 # weights: 507 initial value 97.548295 final value 94.484211 converged Fitting Repeat 3 # weights: 507 initial value 103.365600 iter 10 value 92.382749 iter 20 value 92.293156 iter 30 value 92.059988 iter 40 value 91.905890 iter 50 value 91.905787 iter 50 value 91.905786 iter 50 value 91.905786 final value 91.905786 converged Fitting Repeat 4 # weights: 507 initial value 127.719147 final value 94.484211 converged Fitting Repeat 5 # weights: 507 initial value 126.235347 iter 10 value 93.219337 iter 20 value 93.216343 final value 93.216334 converged Fitting Repeat 1 # weights: 103 initial value 113.365766 iter 10 value 94.382178 iter 20 value 87.661347 iter 30 value 87.257094 iter 40 value 85.976342 iter 50 value 85.805741 iter 60 value 85.377648 iter 70 value 84.642482 iter 80 value 83.554097 iter 90 value 83.218111 iter 100 value 83.159970 final value 83.159970 stopped after 100 iterations Fitting Repeat 2 # weights: 103 initial value 104.224702 iter 10 value 94.489183 iter 20 value 85.735943 iter 30 value 84.681202 iter 40 value 83.231492 iter 50 value 83.062263 iter 60 value 83.004046 iter 70 value 82.920118 final value 82.920106 converged Fitting Repeat 3 # weights: 103 initial value 104.024336 iter 10 value 94.488799 iter 20 value 94.430593 iter 30 value 89.956826 iter 40 value 87.608157 iter 50 value 87.343282 iter 60 value 86.001911 iter 70 value 83.613311 iter 80 value 83.386632 iter 90 value 83.112522 iter 100 value 82.415905 final value 82.415905 stopped after 100 iterations Fitting Repeat 4 # weights: 103 initial value 102.734652 iter 10 value 94.457809 iter 20 value 93.615826 iter 30 value 92.777595 iter 40 value 85.180918 iter 50 value 84.705932 iter 60 value 84.418971 iter 70 value 84.197654 final value 84.168749 converged Fitting Repeat 5 # weights: 103 initial value 104.062461 iter 10 value 94.488523 iter 20 value 85.232028 iter 30 value 84.666144 iter 40 value 84.516713 iter 50 value 84.262215 iter 60 value 84.168754 final value 84.168749 converged Fitting Repeat 1 # weights: 305 initial value 101.814736 iter 10 value 94.577050 iter 20 value 85.486613 iter 30 value 84.691199 iter 40 value 83.890168 iter 50 value 80.676267 iter 60 value 79.847780 iter 70 value 79.432078 iter 80 value 79.278333 iter 90 value 79.208024 iter 100 value 79.195789 final value 79.195789 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 108.746364 iter 10 value 94.298097 iter 20 value 87.332842 iter 30 value 82.448973 iter 40 value 81.564261 iter 50 value 80.969542 iter 60 value 80.033140 iter 70 value 79.144264 iter 80 value 78.917338 iter 90 value 78.774798 iter 100 value 78.580487 final value 78.580487 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 103.028760 iter 10 value 94.405308 iter 20 value 86.497179 iter 30 value 85.063715 iter 40 value 84.333424 iter 50 value 83.224027 iter 60 value 82.045520 iter 70 value 81.760027 iter 80 value 81.534042 iter 90 value 81.482093 iter 100 value 81.012373 final value 81.012373 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 99.720147 iter 10 value 94.147115 iter 20 value 88.265598 iter 30 value 84.934130 iter 40 value 83.603529 iter 50 value 83.159296 iter 60 value 83.132338 iter 70 value 83.076574 iter 80 value 82.097696 iter 90 value 81.221800 iter 100 value 80.359809 final value 80.359809 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 105.583851 iter 10 value 94.333676 iter 20 value 87.269002 iter 30 value 84.647742 iter 40 value 84.001399 iter 50 value 83.805372 iter 60 value 82.289810 iter 70 value 79.680129 iter 80 value 79.286199 iter 90 value 78.760866 iter 100 value 78.337056 final value 78.337056 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 106.631349 iter 10 value 94.437042 iter 20 value 90.919108 iter 30 value 86.915833 iter 40 value 86.523398 iter 50 value 85.130017 iter 60 value 81.950612 iter 70 value 80.399376 iter 80 value 79.453360 iter 90 value 78.782737 iter 100 value 78.578922 final value 78.578922 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 131.911635 iter 10 value 97.639754 iter 20 value 94.388540 iter 30 value 87.542936 iter 40 value 86.167867 iter 50 value 84.805528 iter 60 value 84.407577 iter 70 value 83.835254 iter 80 value 83.123416 iter 90 value 82.977493 iter 100 value 82.899427 final value 82.899427 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 124.448152 iter 10 value 94.398604 iter 20 value 89.538692 iter 30 value 85.806924 iter 40 value 83.606439 iter 50 value 82.047479 iter 60 value 81.448934 iter 70 value 80.769015 iter 80 value 80.460975 iter 90 value 80.237836 iter 100 value 79.690055 final value 79.690055 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 118.521765 iter 10 value 94.967122 iter 20 value 92.023117 iter 30 value 88.750862 iter 40 value 88.104878 iter 50 value 87.832257 iter 60 value 85.028415 iter 70 value 82.581303 iter 80 value 80.081739 iter 90 value 79.677990 iter 100 value 79.274028 final value 79.274028 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 127.461345 iter 10 value 94.293439 iter 20 value 85.840314 iter 30 value 84.977396 iter 40 value 84.325545 iter 50 value 83.513241 iter 60 value 82.852469 iter 70 value 82.290572 iter 80 value 80.669159 iter 90 value 80.025106 iter 100 value 79.705442 final value 79.705442 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 108.736369 final value 94.485747 converged Fitting Repeat 2 # weights: 103 initial value 98.164812 iter 10 value 93.758536 iter 20 value 93.747766 iter 30 value 93.499581 final value 93.462034 converged Fitting Repeat 3 # weights: 103 initial value 97.524061 final value 94.485597 converged Fitting Repeat 4 # weights: 103 initial value 101.740683 final value 94.485604 converged Fitting Repeat 5 # weights: 103 initial value 96.311223 final value 94.485939 converged Fitting Repeat 1 # weights: 305 initial value 101.537909 iter 10 value 94.496029 iter 20 value 94.487775 iter 30 value 93.868532 iter 40 value 93.696466 iter 50 value 89.033325 iter 60 value 88.213621 iter 70 value 88.199052 final value 88.198542 converged Fitting Repeat 2 # weights: 305 initial value 100.982127 iter 10 value 94.489172 iter 20 value 94.481415 iter 30 value 94.342739 iter 40 value 94.200986 iter 50 value 94.158553 iter 60 value 94.157776 final value 94.157497 converged Fitting Repeat 3 # weights: 305 initial value 96.114579 iter 10 value 94.432309 iter 20 value 94.430562 iter 30 value 94.429637 iter 40 value 94.263356 iter 50 value 94.254898 iter 60 value 93.747170 iter 70 value 93.746477 iter 70 value 93.746477 iter 70 value 93.746477 final value 93.746477 converged Fitting Repeat 4 # weights: 305 initial value 114.982508 iter 10 value 93.358327 iter 20 value 93.354225 iter 30 value 92.276404 iter 40 value 91.501603 iter 50 value 91.373933 iter 60 value 91.244345 final value 91.243127 converged Fitting Repeat 5 # weights: 305 initial value 106.999570 iter 10 value 94.471086 iter 20 value 94.296792 iter 30 value 90.122942 iter 40 value 90.121195 iter 50 value 83.971381 iter 60 value 83.805227 iter 70 value 83.767983 iter 80 value 82.622751 iter 90 value 82.611799 iter 100 value 82.603898 final value 82.603898 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 109.043797 iter 10 value 94.475020 iter 20 value 94.472213 iter 30 value 94.417704 iter 40 value 83.943995 iter 50 value 83.929616 final value 83.928734 converged Fitting Repeat 2 # weights: 507 initial value 106.635831 iter 10 value 94.487255 iter 20 value 94.451078 iter 30 value 92.297858 iter 40 value 83.791648 iter 50 value 82.155837 iter 60 value 82.110011 iter 70 value 81.620324 iter 80 value 81.589117 iter 90 value 81.587169 iter 100 value 81.550331 final value 81.550331 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 123.651217 iter 10 value 94.495491 iter 20 value 94.289384 iter 30 value 94.271955 iter 40 value 94.255703 iter 50 value 86.437266 iter 60 value 83.323330 iter 70 value 82.958890 iter 80 value 82.949633 iter 80 value 82.949633 iter 80 value 82.949633 final value 82.949633 converged Fitting Repeat 4 # weights: 507 initial value 96.378143 iter 10 value 86.914577 iter 20 value 84.692996 iter 30 value 84.540093 iter 40 value 83.459598 iter 50 value 83.206372 iter 60 value 83.205434 iter 70 value 83.204292 final value 83.201333 converged Fitting Repeat 5 # weights: 507 initial value 105.118325 iter 10 value 94.492632 iter 20 value 94.481045 iter 30 value 94.351967 iter 40 value 85.777900 iter 50 value 84.940564 final value 84.939923 converged Fitting Repeat 1 # weights: 103 initial value 96.228350 final value 94.484211 converged Fitting Repeat 2 # weights: 103 initial value 103.725702 final value 94.484211 converged Fitting Repeat 3 # weights: 103 initial value 101.405032 final value 94.484211 converged Fitting Repeat 4 # weights: 103 initial value 97.698217 final value 94.484211 converged Fitting Repeat 5 # weights: 103 initial value 105.563479 final value 94.484211 converged Fitting Repeat 1 # weights: 305 initial value 102.029225 final value 94.484211 converged Fitting Repeat 2 # weights: 305 initial value 99.981437 final value 94.046704 converged Fitting Repeat 3 # weights: 305 initial value 105.496989 final value 94.466823 converged Fitting Repeat 4 # weights: 305 initial value 105.428543 iter 10 value 94.300821 iter 20 value 94.298191 final value 94.298182 converged Fitting Repeat 5 # weights: 305 initial value 107.480339 final value 94.484213 converged Fitting Repeat 1 # weights: 507 initial value 108.703918 iter 10 value 94.345185 iter 20 value 94.090886 iter 30 value 94.090586 final value 94.090583 converged Fitting Repeat 2 # weights: 507 initial value 104.725304 iter 10 value 91.733882 iter 20 value 88.553945 iter 30 value 87.950180 iter 40 value 87.018858 iter 50 value 87.017607 iter 50 value 87.017606 iter 50 value 87.017606 final value 87.017606 converged Fitting Repeat 3 # weights: 507 initial value 93.513379 iter 10 value 89.384318 iter 20 value 89.110276 iter 30 value 89.020978 final value 89.020780 converged Fitting Repeat 4 # weights: 507 initial value 99.601277 final value 94.484211 converged Fitting Repeat 5 # weights: 507 initial value 100.926938 final value 94.484211 converged Fitting Repeat 1 # weights: 103 initial value 99.463337 iter 10 value 94.340742 iter 20 value 88.575787 iter 30 value 87.837394 iter 40 value 87.456284 iter 50 value 87.070262 iter 60 value 86.924604 final value 86.924184 converged Fitting Repeat 2 # weights: 103 initial value 96.333741 iter 10 value 94.554151 iter 20 value 91.222763 iter 30 value 90.029005 iter 40 value 89.318994 iter 50 value 89.087389 final value 89.086799 converged Fitting Repeat 3 # weights: 103 initial value 98.627032 iter 10 value 94.416943 iter 20 value 94.136440 iter 30 value 93.451111 iter 40 value 90.725934 iter 50 value 89.028802 iter 60 value 88.159572 iter 70 value 86.853012 iter 80 value 86.494982 iter 90 value 86.292696 final value 86.229105 converged Fitting Repeat 4 # weights: 103 initial value 98.554987 iter 10 value 94.489158 iter 20 value 94.486211 iter 30 value 94.323846 iter 40 value 94.288252 iter 50 value 92.977559 iter 60 value 88.594434 iter 70 value 88.386381 iter 80 value 88.343227 iter 90 value 88.334393 iter 100 value 88.331413 final value 88.331413 stopped after 100 iterations Fitting Repeat 5 # weights: 103 initial value 96.178093 iter 10 value 94.488332 iter 20 value 94.257381 iter 30 value 94.203426 iter 40 value 94.124861 iter 50 value 93.796339 iter 60 value 92.199051 iter 70 value 90.666175 iter 80 value 90.512323 iter 90 value 90.480636 iter 100 value 90.215209 final value 90.215209 stopped after 100 iterations Fitting Repeat 1 # weights: 305 initial value 102.129957 iter 10 value 94.502044 iter 20 value 90.460590 iter 30 value 87.815055 iter 40 value 86.631043 iter 50 value 85.710404 iter 60 value 85.044399 iter 70 value 84.177822 iter 80 value 84.110320 iter 90 value 84.011125 iter 100 value 83.974275 final value 83.974275 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 120.821968 iter 10 value 94.477979 iter 20 value 93.559242 iter 30 value 91.317863 iter 40 value 88.413502 iter 50 value 86.046213 iter 60 value 85.523122 iter 70 value 84.919148 iter 80 value 84.369211 iter 90 value 84.138258 iter 100 value 84.041307 final value 84.041307 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 103.452565 iter 10 value 94.504051 iter 20 value 91.636666 iter 30 value 90.067566 iter 40 value 89.401098 iter 50 value 89.381285 iter 60 value 89.299899 iter 70 value 87.336450 iter 80 value 85.116467 iter 90 value 84.200482 iter 100 value 84.154131 final value 84.154131 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 107.984098 iter 10 value 94.493909 iter 20 value 94.135803 iter 30 value 88.455712 iter 40 value 87.812000 iter 50 value 87.628907 iter 60 value 86.576086 iter 70 value 84.902046 iter 80 value 84.512275 iter 90 value 84.417324 iter 100 value 84.400128 final value 84.400128 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 100.514671 iter 10 value 94.498649 iter 20 value 90.845173 iter 30 value 87.738373 iter 40 value 87.311520 iter 50 value 86.628942 iter 60 value 85.311137 iter 70 value 85.000097 iter 80 value 84.156754 iter 90 value 83.780434 iter 100 value 83.686898 final value 83.686898 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 114.686404 iter 10 value 94.278553 iter 20 value 90.958609 iter 30 value 89.339716 iter 40 value 85.390848 iter 50 value 84.793939 iter 60 value 84.395755 iter 70 value 84.043463 iter 80 value 83.826079 iter 90 value 83.614249 iter 100 value 83.568773 final value 83.568773 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 109.123832 iter 10 value 94.877421 iter 20 value 92.716460 iter 30 value 88.784367 iter 40 value 88.552600 iter 50 value 85.259726 iter 60 value 84.502400 iter 70 value 84.251878 iter 80 value 84.121952 iter 90 value 84.005835 iter 100 value 83.935043 final value 83.935043 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 113.345376 iter 10 value 95.450050 iter 20 value 89.964966 iter 30 value 87.754485 iter 40 value 85.228008 iter 50 value 84.626359 iter 60 value 84.468816 iter 70 value 84.318275 iter 80 value 84.258432 iter 90 value 84.242232 iter 100 value 84.141919 final value 84.141919 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 107.194266 iter 10 value 96.539135 iter 20 value 93.307180 iter 30 value 87.682200 iter 40 value 87.371767 iter 50 value 86.884049 iter 60 value 85.891527 iter 70 value 84.708098 iter 80 value 84.230923 iter 90 value 83.974397 iter 100 value 83.801818 final value 83.801818 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 106.079027 iter 10 value 98.223747 iter 20 value 89.329934 iter 30 value 88.280269 iter 40 value 84.957357 iter 50 value 84.859084 iter 60 value 84.683721 iter 70 value 84.428860 iter 80 value 83.998392 iter 90 value 83.794853 iter 100 value 83.745720 final value 83.745720 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 98.089750 final value 94.485975 converged Fitting Repeat 2 # weights: 103 initial value 102.007105 final value 94.485834 converged Fitting Repeat 3 # weights: 103 initial value 98.185160 final value 94.485743 converged Fitting Repeat 4 # weights: 103 initial value 94.685164 final value 94.485807 converged Fitting Repeat 5 # weights: 103 initial value 97.068317 final value 94.486058 converged Fitting Repeat 1 # weights: 305 initial value 97.934076 iter 10 value 94.489005 iter 20 value 94.294309 iter 30 value 90.718983 final value 89.412212 converged Fitting Repeat 2 # weights: 305 initial value 100.426110 iter 10 value 94.488678 iter 20 value 94.483974 iter 30 value 94.235177 iter 40 value 94.091442 final value 94.091223 converged Fitting Repeat 3 # weights: 305 initial value 109.594689 iter 10 value 94.490760 iter 20 value 94.489708 iter 30 value 94.484887 iter 40 value 94.445147 iter 50 value 94.152807 iter 60 value 89.106849 iter 70 value 88.400490 iter 80 value 87.753952 iter 90 value 87.634942 iter 100 value 87.634139 final value 87.634139 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 98.378473 iter 10 value 94.051536 iter 20 value 88.378145 iter 30 value 87.041006 iter 40 value 87.035332 iter 50 value 87.022042 iter 60 value 86.840312 iter 70 value 86.819338 final value 86.819219 converged Fitting Repeat 5 # weights: 305 initial value 99.195529 iter 10 value 94.489624 iter 20 value 94.484611 final value 94.484381 converged Fitting Repeat 1 # weights: 507 initial value 99.846565 iter 10 value 94.463712 iter 20 value 92.716298 iter 30 value 92.211594 iter 40 value 92.028715 iter 50 value 92.012649 final value 92.011060 converged Fitting Repeat 2 # weights: 507 initial value 99.026068 iter 10 value 94.475383 iter 20 value 94.370199 iter 30 value 89.095101 iter 40 value 87.748241 iter 50 value 86.022957 iter 60 value 85.625777 iter 70 value 85.601875 iter 80 value 85.597540 iter 90 value 85.594359 iter 100 value 85.511159 final value 85.511159 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 101.713485 iter 10 value 94.043927 iter 20 value 91.326726 iter 30 value 90.495119 iter 40 value 90.493880 iter 50 value 89.231303 iter 60 value 88.950937 iter 70 value 88.949437 iter 80 value 88.910148 iter 90 value 88.146793 iter 100 value 88.131471 final value 88.131471 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 97.288206 iter 10 value 90.582178 iter 20 value 89.854743 iter 30 value 89.582676 iter 40 value 89.580226 iter 50 value 88.991230 iter 60 value 88.434701 final value 88.434333 converged Fitting Repeat 5 # weights: 507 initial value 101.114008 iter 10 value 93.009140 iter 20 value 89.423638 iter 30 value 89.369022 iter 40 value 89.098296 iter 50 value 89.095733 iter 60 value 89.092298 iter 70 value 89.085986 iter 70 value 89.085985 final value 89.085985 converged Fitting Repeat 1 # weights: 103 initial value 104.139042 final value 94.484211 converged Fitting Repeat 2 # weights: 103 initial value 96.361625 final value 94.484211 converged Fitting Repeat 3 # weights: 103 initial value 107.947826 final value 94.484211 converged Fitting Repeat 4 # weights: 103 initial value 103.209985 final value 94.484211 converged Fitting Repeat 5 # weights: 103 initial value 104.292820 iter 10 value 86.188533 iter 20 value 83.637156 iter 30 value 83.458571 iter 40 value 82.862964 iter 50 value 82.860667 iter 60 value 82.860535 final value 82.860531 converged Fitting Repeat 1 # weights: 305 initial value 96.004537 final value 94.484211 converged Fitting Repeat 2 # weights: 305 initial value 99.329026 final value 94.484211 converged Fitting Repeat 3 # weights: 305 initial value 108.575816 iter 10 value 87.538301 iter 20 value 87.233720 iter 30 value 86.630032 final value 86.630002 converged Fitting Repeat 4 # weights: 305 initial value 98.474024 final value 94.484211 converged Fitting Repeat 5 # weights: 305 initial value 103.808033 iter 10 value 93.786074 final value 93.772973 converged Fitting Repeat 1 # weights: 507 initial value 95.446104 iter 10 value 85.075838 iter 20 value 81.717610 iter 30 value 80.920023 final value 80.919959 converged Fitting Repeat 2 # weights: 507 initial value 98.409119 final value 92.613874 converged Fitting Repeat 3 # weights: 507 initial value 105.524748 iter 10 value 93.773190 final value 93.772973 converged Fitting Repeat 4 # weights: 507 initial value 110.971462 iter 10 value 93.597509 iter 20 value 89.469656 iter 30 value 87.494154 final value 87.368423 converged Fitting Repeat 5 # weights: 507 initial value 123.250583 final value 94.484211 converged Fitting Repeat 1 # weights: 103 initial value 97.238983 iter 10 value 94.255155 iter 20 value 92.197580 iter 30 value 83.230418 iter 40 value 82.468580 iter 50 value 79.037075 iter 60 value 77.363424 iter 70 value 75.989554 iter 80 value 75.785254 iter 90 value 75.602247 iter 100 value 75.579639 final value 75.579639 stopped after 100 iterations Fitting Repeat 2 # weights: 103 initial value 99.044516 iter 10 value 94.486571 iter 20 value 93.995914 iter 30 value 93.978434 iter 40 value 93.934549 iter 50 value 88.454475 iter 60 value 87.023835 iter 70 value 84.629866 iter 80 value 81.578935 iter 90 value 81.147886 iter 100 value 80.619114 final value 80.619114 stopped after 100 iterations Fitting Repeat 3 # weights: 103 initial value 99.833022 iter 10 value 94.224598 iter 20 value 88.588593 iter 30 value 85.465106 iter 40 value 82.646502 iter 50 value 81.048145 iter 60 value 79.582041 iter 70 value 79.313696 iter 80 value 79.312478 iter 80 value 79.312477 iter 80 value 79.312477 final value 79.312477 converged Fitting Repeat 4 # weights: 103 initial value 97.024347 iter 10 value 94.488433 iter 20 value 94.426444 iter 30 value 92.158990 iter 40 value 88.083341 iter 50 value 79.807773 iter 60 value 79.556371 iter 70 value 77.990706 iter 80 value 76.439473 iter 90 value 75.981516 iter 100 value 75.958430 final value 75.958430 stopped after 100 iterations Fitting Repeat 5 # weights: 103 initial value 117.610861 iter 10 value 94.301476 iter 20 value 85.592167 iter 30 value 84.412173 iter 40 value 82.074215 iter 50 value 81.918599 iter 60 value 81.846740 iter 70 value 81.840035 iter 70 value 81.840034 iter 70 value 81.840034 final value 81.840034 converged Fitting Repeat 1 # weights: 305 initial value 106.948214 iter 10 value 94.450609 iter 20 value 93.873014 iter 30 value 93.770445 iter 40 value 93.649126 iter 50 value 84.035743 iter 60 value 82.310066 iter 70 value 81.648405 iter 80 value 80.001888 iter 90 value 76.777937 iter 100 value 75.879834 final value 75.879834 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 122.117614 iter 10 value 94.628331 iter 20 value 88.583823 iter 30 value 84.576949 iter 40 value 80.252780 iter 50 value 77.376807 iter 60 value 75.827357 iter 70 value 75.408151 iter 80 value 75.289528 iter 90 value 75.172123 iter 100 value 75.147603 final value 75.147603 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 121.243562 iter 10 value 95.006116 iter 20 value 94.494693 iter 30 value 94.322055 iter 40 value 93.917043 iter 50 value 93.609401 iter 60 value 81.590938 iter 70 value 78.807315 iter 80 value 78.622241 iter 90 value 77.886710 iter 100 value 77.517229 final value 77.517229 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 116.884186 iter 10 value 94.466267 iter 20 value 84.583054 iter 30 value 78.437065 iter 40 value 77.596302 iter 50 value 76.757997 iter 60 value 76.507935 iter 70 value 76.455197 iter 80 value 76.189018 iter 90 value 76.085504 iter 100 value 76.000747 final value 76.000747 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 108.519417 iter 10 value 94.482884 iter 20 value 87.008203 iter 30 value 84.929243 iter 40 value 84.151990 iter 50 value 82.393485 iter 60 value 79.494435 iter 70 value 78.401600 iter 80 value 77.647564 iter 90 value 76.755656 iter 100 value 76.415199 final value 76.415199 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 123.325073 iter 10 value 92.514214 iter 20 value 82.001873 iter 30 value 78.129198 iter 40 value 77.350973 iter 50 value 76.955498 iter 60 value 76.519224 iter 70 value 75.609647 iter 80 value 75.290015 iter 90 value 75.258851 iter 100 value 75.158323 final value 75.158323 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 120.334764 iter 10 value 93.446835 iter 20 value 81.064724 iter 30 value 79.376405 iter 40 value 76.635772 iter 50 value 76.367403 iter 60 value 76.163244 iter 70 value 75.914923 iter 80 value 75.873973 iter 90 value 75.830694 iter 100 value 75.709042 final value 75.709042 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 128.210581 iter 10 value 91.510942 iter 20 value 83.900908 iter 30 value 80.615192 iter 40 value 79.608168 iter 50 value 79.403791 iter 60 value 78.604172 iter 70 value 76.549611 iter 80 value 75.272012 iter 90 value 75.029598 iter 100 value 74.867356 final value 74.867356 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 104.266907 iter 10 value 98.997032 iter 20 value 87.088414 iter 30 value 82.519118 iter 40 value 80.835433 iter 50 value 80.110499 iter 60 value 79.918359 iter 70 value 79.814644 iter 80 value 79.733764 iter 90 value 79.227323 iter 100 value 77.970701 final value 77.970701 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 111.587532 iter 10 value 94.616528 iter 20 value 89.965561 iter 30 value 86.265953 iter 40 value 80.915537 iter 50 value 80.613674 iter 60 value 79.938480 iter 70 value 78.687881 iter 80 value 77.413396 iter 90 value 76.853470 iter 100 value 76.406864 final value 76.406864 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 101.808028 final value 94.485835 converged Fitting Repeat 2 # weights: 103 initial value 100.409390 iter 10 value 93.633788 final value 93.542520 converged Fitting Repeat 3 # weights: 103 initial value 97.616765 final value 94.485984 converged Fitting Repeat 4 # weights: 103 initial value 101.940845 final value 94.485868 converged Fitting Repeat 5 # weights: 103 initial value 98.242956 final value 94.485732 converged Fitting Repeat 1 # weights: 305 initial value 96.495545 iter 10 value 84.183069 iter 20 value 80.219756 iter 30 value 79.672253 iter 40 value 79.664276 final value 79.663865 converged Fitting Repeat 2 # weights: 305 initial value 96.009234 iter 10 value 93.778179 iter 20 value 93.773901 iter 30 value 93.344228 iter 40 value 92.120049 iter 50 value 78.449455 iter 60 value 76.849907 iter 70 value 76.254812 iter 80 value 73.753406 iter 90 value 73.712894 iter 100 value 73.711468 final value 73.711468 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 105.289912 iter 10 value 93.777868 iter 20 value 93.774504 final value 93.774125 converged Fitting Repeat 4 # weights: 305 initial value 102.152085 iter 10 value 93.778417 iter 20 value 93.775877 iter 30 value 84.528635 final value 83.895089 converged Fitting Repeat 5 # weights: 305 initial value 105.854908 iter 10 value 94.488555 iter 20 value 94.484240 iter 30 value 80.431212 iter 40 value 77.347217 iter 50 value 76.941100 iter 60 value 76.655561 iter 70 value 76.653510 iter 70 value 76.653510 final value 76.653510 converged Fitting Repeat 1 # weights: 507 initial value 117.138160 iter 10 value 92.336508 iter 20 value 91.664255 iter 30 value 88.636119 iter 40 value 87.419450 iter 50 value 86.776945 iter 60 value 86.620933 iter 70 value 86.619694 iter 80 value 86.600109 iter 90 value 86.242080 iter 100 value 86.115723 final value 86.115723 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 111.175705 iter 10 value 93.781390 iter 20 value 93.778925 iter 30 value 91.770683 iter 40 value 86.038166 iter 50 value 86.007835 iter 60 value 85.969361 iter 70 value 85.967293 iter 80 value 81.550834 iter 90 value 81.549110 iter 100 value 79.690915 final value 79.690915 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 106.061823 iter 10 value 93.786118 iter 20 value 93.781643 iter 30 value 93.307823 iter 40 value 87.374828 iter 50 value 85.432312 iter 60 value 84.598313 iter 70 value 84.222005 iter 80 value 77.691863 iter 90 value 76.012698 iter 100 value 74.285301 final value 74.285301 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 94.255041 iter 10 value 82.057925 iter 20 value 81.926389 iter 30 value 81.917890 iter 40 value 81.917054 iter 50 value 79.484207 iter 60 value 78.822992 iter 70 value 78.145030 iter 80 value 78.048528 iter 90 value 78.047861 iter 100 value 78.046805 final value 78.046805 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 103.384456 iter 10 value 94.492395 iter 20 value 89.742168 iter 30 value 83.901702 iter 40 value 83.894742 iter 50 value 80.525727 iter 60 value 80.135653 iter 70 value 80.122966 iter 80 value 80.122385 iter 90 value 79.458219 iter 100 value 79.178613 final value 79.178613 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 96.659869 final value 94.038251 converged Fitting Repeat 2 # weights: 103 initial value 99.406637 final value 94.052910 converged Fitting Repeat 3 # weights: 103 initial value 96.710713 iter 10 value 90.900201 iter 20 value 88.242693 final value 88.242188 converged Fitting Repeat 4 # weights: 103 initial value 95.745500 final value 94.052910 converged Fitting Repeat 5 # weights: 103 initial value 104.671914 final value 94.052910 converged Fitting Repeat 1 # weights: 305 initial value 104.623105 final value 94.038251 converged Fitting Repeat 2 # weights: 305 initial value 104.352532 final value 94.052910 converged Fitting Repeat 3 # weights: 305 initial value 102.486062 final value 94.052910 converged Fitting Repeat 4 # weights: 305 initial value 107.182817 final value 94.052910 converged Fitting Repeat 5 # weights: 305 initial value 96.595625 final value 94.052910 converged Fitting Repeat 1 # weights: 507 initial value 103.996394 final value 94.038251 converged Fitting Repeat 2 # weights: 507 initial value 95.651838 iter 10 value 93.923777 iter 20 value 93.860394 final value 93.860356 converged Fitting Repeat 3 # weights: 507 initial value 96.414668 iter 10 value 93.712323 iter 20 value 93.688939 final value 93.688927 converged Fitting Repeat 4 # weights: 507 initial value 112.855752 iter 10 value 89.227592 iter 20 value 85.835286 iter 30 value 80.501905 iter 40 value 80.080434 iter 50 value 80.043048 final value 80.042996 converged Fitting Repeat 5 # weights: 507 initial value 113.417822 final value 94.052910 converged Fitting Repeat 1 # weights: 103 initial value 96.294508 iter 10 value 94.054833 iter 20 value 86.843868 iter 30 value 85.544120 iter 40 value 85.004988 iter 50 value 83.855225 iter 60 value 83.025921 iter 70 value 83.018390 iter 80 value 83.016487 final value 83.016486 converged Fitting Repeat 2 # weights: 103 initial value 95.247106 iter 10 value 84.591600 iter 20 value 83.710667 iter 30 value 83.449093 iter 40 value 82.923590 iter 50 value 82.619252 iter 60 value 82.559618 final value 82.559517 converged Fitting Repeat 3 # weights: 103 initial value 101.584899 iter 10 value 94.061127 iter 20 value 90.624642 iter 30 value 86.554279 iter 40 value 84.802656 iter 50 value 83.454465 iter 60 value 83.443444 iter 70 value 83.415715 final value 83.412442 converged Fitting Repeat 4 # weights: 103 initial value 113.629854 iter 10 value 93.486548 iter 20 value 88.573234 iter 30 value 86.953193 iter 40 value 84.399550 iter 50 value 81.631038 iter 60 value 81.336902 iter 70 value 80.997191 iter 80 value 80.031691 iter 90 value 79.030533 iter 100 value 78.818783 final value 78.818783 stopped after 100 iterations Fitting Repeat 5 # weights: 103 initial value 101.902669 iter 10 value 93.972684 iter 20 value 85.492000 iter 30 value 81.695587 iter 40 value 81.406213 iter 50 value 81.016239 iter 60 value 80.854904 iter 70 value 80.096436 iter 80 value 79.498210 iter 90 value 79.155374 iter 100 value 79.048506 final value 79.048506 stopped after 100 iterations Fitting Repeat 1 # weights: 305 initial value 101.519453 iter 10 value 94.144121 iter 20 value 93.975546 iter 30 value 85.902899 iter 40 value 85.503442 iter 50 value 83.203818 iter 60 value 81.178055 iter 70 value 79.170563 iter 80 value 78.691484 iter 90 value 78.248155 iter 100 value 78.107837 final value 78.107837 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 112.475213 iter 10 value 94.092192 iter 20 value 91.034615 iter 30 value 90.244353 iter 40 value 87.133003 iter 50 value 82.064871 iter 60 value 80.160471 iter 70 value 79.165320 iter 80 value 78.629125 iter 90 value 78.529461 iter 100 value 78.503949 final value 78.503949 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 102.744162 iter 10 value 93.669593 iter 20 value 86.595492 iter 30 value 85.064657 iter 40 value 84.407470 iter 50 value 82.874794 iter 60 value 82.742669 iter 70 value 82.564164 iter 80 value 81.912362 iter 90 value 80.269036 iter 100 value 78.423508 final value 78.423508 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 116.918538 iter 10 value 94.048886 iter 20 value 92.747165 iter 30 value 85.655940 iter 40 value 83.754612 iter 50 value 83.273800 iter 60 value 80.899847 iter 70 value 79.237113 iter 80 value 78.753852 iter 90 value 78.325406 iter 100 value 78.262519 final value 78.262519 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 123.436102 iter 10 value 89.570109 iter 20 value 83.648922 iter 30 value 82.329730 iter 40 value 81.283890 iter 50 value 80.966344 iter 60 value 80.913575 iter 70 value 80.868813 iter 80 value 80.806805 iter 90 value 80.083581 iter 100 value 78.876801 final value 78.876801 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 115.297485 iter 10 value 94.038898 iter 20 value 87.847905 iter 30 value 85.290034 iter 40 value 82.420547 iter 50 value 80.066575 iter 60 value 79.270536 iter 70 value 79.040406 iter 80 value 78.885639 iter 90 value 78.256890 iter 100 value 77.874062 final value 77.874062 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 114.858249 iter 10 value 95.045345 iter 20 value 86.660241 iter 30 value 84.625889 iter 40 value 84.283634 iter 50 value 80.818016 iter 60 value 79.828428 iter 70 value 79.038890 iter 80 value 78.578534 iter 90 value 78.243968 iter 100 value 77.663540 final value 77.663540 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 106.966979 iter 10 value 91.678345 iter 20 value 82.659131 iter 30 value 81.058324 iter 40 value 80.698574 iter 50 value 78.827034 iter 60 value 78.469653 iter 70 value 78.181937 iter 80 value 77.538642 iter 90 value 77.327972 iter 100 value 77.263881 final value 77.263881 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 122.570956 iter 10 value 94.863168 iter 20 value 94.016348 iter 30 value 87.660735 iter 40 value 85.747642 iter 50 value 84.858225 iter 60 value 82.090883 iter 70 value 80.039786 iter 80 value 79.162057 iter 90 value 78.808893 iter 100 value 78.413295 final value 78.413295 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 125.100312 iter 10 value 94.141045 iter 20 value 89.722154 iter 30 value 82.627206 iter 40 value 80.707436 iter 50 value 79.495641 iter 60 value 78.494941 iter 70 value 78.188043 iter 80 value 78.080490 iter 90 value 77.775030 iter 100 value 77.567842 final value 77.567842 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 107.009699 iter 10 value 94.054746 iter 20 value 93.845741 iter 30 value 92.801212 iter 40 value 92.727310 iter 50 value 92.726208 final value 92.726204 converged Fitting Repeat 2 # weights: 103 initial value 100.153201 iter 10 value 94.066905 iter 20 value 87.214752 iter 30 value 86.380346 iter 40 value 85.981199 iter 50 value 85.715868 iter 60 value 84.892233 final value 84.892185 converged Fitting Repeat 3 # weights: 103 initial value 98.079451 final value 94.054468 converged Fitting Repeat 4 # weights: 103 initial value 100.029026 final value 94.054485 converged Fitting Repeat 5 # weights: 103 initial value 97.822210 final value 94.054668 converged Fitting Repeat 1 # weights: 305 initial value 99.185848 iter 10 value 94.043252 iter 20 value 94.038350 iter 30 value 93.948203 iter 40 value 93.689323 final value 93.689321 converged Fitting Repeat 2 # weights: 305 initial value 107.494939 iter 10 value 93.586441 iter 20 value 93.573860 iter 30 value 93.564760 iter 40 value 93.563863 iter 50 value 93.562832 iter 60 value 93.485976 iter 70 value 93.254289 iter 80 value 90.719125 iter 90 value 86.570557 iter 100 value 86.003705 final value 86.003705 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 109.443748 iter 10 value 93.693823 iter 20 value 92.447045 iter 30 value 85.607614 iter 40 value 81.125621 iter 50 value 81.122031 iter 60 value 81.121644 iter 70 value 81.119842 iter 80 value 81.117971 iter 90 value 81.117746 iter 100 value 81.010301 final value 81.010301 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 97.733675 iter 10 value 94.013574 iter 20 value 93.707399 iter 30 value 93.655651 iter 40 value 93.655094 iter 50 value 93.641510 final value 93.641508 converged Fitting Repeat 5 # weights: 305 initial value 111.695204 iter 10 value 94.057519 iter 20 value 86.474234 iter 30 value 85.981645 iter 40 value 85.877725 iter 50 value 85.877051 iter 60 value 85.874343 iter 70 value 85.125544 final value 84.787667 converged Fitting Repeat 1 # weights: 507 initial value 99.815261 iter 10 value 87.406976 iter 20 value 85.883013 iter 30 value 85.804209 iter 40 value 85.761798 iter 50 value 85.396506 iter 60 value 84.853118 iter 70 value 84.728606 iter 80 value 81.220389 iter 90 value 80.512298 iter 100 value 80.390559 final value 80.390559 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 138.632665 iter 10 value 94.047129 iter 20 value 94.039545 iter 30 value 86.322013 iter 40 value 84.285906 iter 50 value 84.265560 iter 60 value 84.260890 iter 70 value 84.260717 final value 84.260620 converged Fitting Repeat 3 # weights: 507 initial value 110.454776 iter 10 value 89.642522 iter 20 value 89.531953 iter 30 value 89.528244 iter 40 value 89.522345 final value 89.521278 converged Fitting Repeat 4 # weights: 507 initial value 96.777065 iter 10 value 94.046311 iter 20 value 93.924751 iter 30 value 85.119159 iter 40 value 81.943921 iter 50 value 79.322684 iter 60 value 78.021900 iter 70 value 77.870023 iter 80 value 77.844263 iter 90 value 77.832783 iter 100 value 77.830165 final value 77.830165 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 109.687482 iter 10 value 94.046207 iter 20 value 94.040621 iter 30 value 94.038341 iter 40 value 82.944913 iter 50 value 80.976291 iter 60 value 78.636152 iter 70 value 78.409378 iter 80 value 78.407980 iter 90 value 78.406839 iter 100 value 78.405732 final value 78.405732 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 99.795363 final value 94.052910 converged Fitting Repeat 2 # weights: 103 initial value 97.005847 final value 94.052910 converged Fitting Repeat 3 # weights: 103 initial value 96.473810 final value 94.052910 converged Fitting Repeat 4 # weights: 103 initial value 100.561785 iter 10 value 93.268315 iter 20 value 93.264669 final value 93.264652 converged Fitting Repeat 5 # weights: 103 initial value 94.732380 final value 94.052910 converged Fitting Repeat 1 # weights: 305 initial value 99.179980 final value 94.052910 converged Fitting Repeat 2 # weights: 305 initial value 107.881163 final value 94.052910 converged Fitting Repeat 3 # weights: 305 initial value 108.626612 iter 10 value 93.689786 iter 20 value 87.985223 final value 87.895644 converged Fitting Repeat 4 # weights: 305 initial value 97.544948 final value 94.052910 converged Fitting Repeat 5 # weights: 305 initial value 99.396908 final value 94.022599 converged Fitting Repeat 1 # weights: 507 initial value 112.540184 final value 94.052910 converged Fitting Repeat 2 # weights: 507 initial value 94.458081 final value 94.052910 converged Fitting Repeat 3 # weights: 507 initial value 102.801260 iter 10 value 89.368742 iter 20 value 86.268146 final value 86.268064 converged Fitting Repeat 4 # weights: 507 initial value 114.228342 final value 94.052911 converged Fitting Repeat 5 # weights: 507 initial value 103.364872 final value 93.238538 converged Fitting Repeat 1 # weights: 103 initial value 102.598201 iter 10 value 94.089031 iter 20 value 94.046997 iter 30 value 87.390101 iter 40 value 87.066563 iter 50 value 86.137480 iter 60 value 85.292106 iter 70 value 84.697834 iter 80 value 83.963218 iter 90 value 83.705838 iter 100 value 83.701018 final value 83.701018 stopped after 100 iterations Fitting Repeat 2 # weights: 103 initial value 102.428294 iter 10 value 94.055066 iter 20 value 93.989469 iter 30 value 93.686123 iter 40 value 93.632959 iter 50 value 89.288582 iter 60 value 87.691729 iter 70 value 86.333250 iter 80 value 85.790461 iter 90 value 85.565473 iter 100 value 85.048669 final value 85.048669 stopped after 100 iterations Fitting Repeat 3 # weights: 103 initial value 113.461307 iter 10 value 93.942925 iter 20 value 85.907115 iter 30 value 85.587021 iter 40 value 85.396644 iter 50 value 85.328017 iter 60 value 85.316883 final value 85.316150 converged Fitting Repeat 4 # weights: 103 initial value 97.278531 iter 10 value 93.400483 iter 20 value 86.564325 iter 30 value 85.818141 iter 40 value 85.329218 iter 50 value 85.324012 iter 60 value 85.321231 iter 70 value 85.316409 final value 85.316150 converged Fitting Repeat 5 # weights: 103 initial value 97.383882 iter 10 value 93.732071 iter 20 value 90.867620 iter 30 value 87.843072 iter 40 value 86.962034 iter 50 value 85.140268 iter 60 value 84.162007 iter 70 value 84.068251 iter 80 value 84.042856 iter 90 value 83.850597 iter 100 value 83.701017 final value 83.701017 stopped after 100 iterations Fitting Repeat 1 # weights: 305 initial value 111.476662 iter 10 value 93.371718 iter 20 value 86.831719 iter 30 value 86.633424 iter 40 value 83.978420 iter 50 value 83.410723 iter 60 value 82.865811 iter 70 value 82.713446 iter 80 value 82.406499 iter 90 value 82.305547 iter 100 value 82.150551 final value 82.150551 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 105.671766 iter 10 value 94.431588 iter 20 value 94.061924 iter 30 value 91.900945 iter 40 value 88.955485 iter 50 value 85.220163 iter 60 value 83.530631 iter 70 value 82.642362 iter 80 value 82.444147 iter 90 value 82.364348 iter 100 value 82.362757 final value 82.362757 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 106.723347 iter 10 value 94.225142 iter 20 value 88.954115 iter 30 value 86.462590 iter 40 value 85.116083 iter 50 value 84.545658 iter 60 value 84.412825 iter 70 value 84.074057 iter 80 value 83.495101 iter 90 value 82.680517 iter 100 value 82.264459 final value 82.264459 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 138.328675 iter 10 value 94.011947 iter 20 value 93.642951 iter 30 value 88.491328 iter 40 value 86.618408 iter 50 value 86.087594 iter 60 value 85.412621 iter 70 value 85.250581 iter 80 value 84.139243 iter 90 value 83.341207 iter 100 value 83.055695 final value 83.055695 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 100.025133 iter 10 value 93.761398 iter 20 value 91.275207 iter 30 value 87.869706 iter 40 value 87.269160 iter 50 value 85.899053 iter 60 value 84.322475 iter 70 value 83.784983 iter 80 value 83.296135 iter 90 value 82.750934 iter 100 value 82.583055 final value 82.583055 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 106.972197 iter 10 value 94.187573 iter 20 value 89.982227 iter 30 value 87.150414 iter 40 value 85.762052 iter 50 value 83.613651 iter 60 value 83.278905 iter 70 value 82.840303 iter 80 value 82.683634 iter 90 value 82.397815 iter 100 value 82.106747 final value 82.106747 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 108.985239 iter 10 value 91.164035 iter 20 value 87.397592 iter 30 value 86.409294 iter 40 value 84.817689 iter 50 value 84.619776 iter 60 value 84.497476 iter 70 value 84.041486 iter 80 value 83.651957 iter 90 value 83.574815 iter 100 value 83.236557 final value 83.236557 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 106.466935 iter 10 value 93.582061 iter 20 value 86.189316 iter 30 value 85.158658 iter 40 value 84.592123 iter 50 value 84.339992 iter 60 value 83.472815 iter 70 value 82.964530 iter 80 value 82.800193 iter 90 value 82.502021 iter 100 value 82.214940 final value 82.214940 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 139.921023 iter 10 value 94.096749 iter 20 value 93.796996 iter 30 value 91.179618 iter 40 value 87.978175 iter 50 value 85.322878 iter 60 value 84.615991 iter 70 value 83.868596 iter 80 value 83.405187 iter 90 value 82.597183 iter 100 value 82.446268 final value 82.446268 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 125.933201 iter 10 value 94.444658 iter 20 value 93.776044 iter 30 value 91.036668 iter 40 value 87.476078 iter 50 value 84.514659 iter 60 value 83.958652 iter 70 value 83.737805 iter 80 value 83.565046 iter 90 value 83.361466 iter 100 value 82.862003 final value 82.862003 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 97.728880 iter 10 value 93.592247 iter 20 value 93.584247 final value 93.583341 converged Fitting Repeat 2 # weights: 103 initial value 103.440996 final value 94.054416 converged Fitting Repeat 3 # weights: 103 initial value 106.357828 final value 94.054674 converged Fitting Repeat 4 # weights: 103 initial value 104.980896 final value 94.054371 converged Fitting Repeat 5 # weights: 103 initial value 95.968615 iter 10 value 87.139086 iter 20 value 85.686196 iter 30 value 85.599252 iter 40 value 85.597558 iter 50 value 85.597341 iter 60 value 85.597234 final value 85.597232 converged Fitting Repeat 1 # weights: 305 initial value 102.710150 iter 10 value 93.588410 iter 20 value 93.578907 iter 30 value 93.533341 iter 40 value 93.531503 final value 93.529252 converged Fitting Repeat 2 # weights: 305 initial value 102.017302 iter 10 value 93.587629 iter 20 value 92.916543 iter 30 value 86.937741 iter 40 value 86.108494 final value 86.097787 converged Fitting Repeat 3 # weights: 305 initial value 95.433847 iter 10 value 94.057596 iter 20 value 94.038186 iter 30 value 92.251661 iter 40 value 86.977098 iter 50 value 86.357617 iter 60 value 86.345169 final value 86.345152 converged Fitting Repeat 4 # weights: 305 initial value 96.536730 iter 10 value 93.586969 iter 20 value 93.583555 final value 93.582683 converged Fitting Repeat 5 # weights: 305 initial value 97.585100 iter 10 value 93.676747 iter 20 value 92.456653 iter 30 value 88.750744 iter 40 value 87.970954 iter 50 value 87.944477 final value 87.944189 converged Fitting Repeat 1 # weights: 507 initial value 100.271080 iter 10 value 93.591060 iter 20 value 93.588819 iter 30 value 93.587510 iter 40 value 93.582540 iter 50 value 86.837504 iter 60 value 86.777481 iter 70 value 86.765051 iter 80 value 86.707333 iter 90 value 86.704281 final value 86.704223 converged Fitting Repeat 2 # weights: 507 initial value 146.967492 iter 10 value 104.882721 iter 20 value 94.030043 iter 30 value 87.791516 iter 40 value 86.833754 iter 50 value 85.602686 iter 60 value 81.854160 iter 70 value 81.421833 iter 80 value 81.250577 iter 90 value 81.240301 iter 100 value 81.180710 final value 81.180710 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 116.651880 iter 10 value 93.591200 iter 20 value 93.583416 iter 30 value 93.437556 iter 40 value 91.870508 iter 50 value 85.818302 iter 60 value 85.064746 iter 70 value 84.842128 final value 84.840096 converged Fitting Repeat 4 # weights: 507 initial value 97.369978 iter 10 value 93.735471 iter 20 value 93.590728 iter 30 value 93.583430 iter 40 value 92.044266 iter 50 value 85.340201 iter 60 value 85.290875 iter 70 value 85.228101 iter 80 value 84.873635 iter 90 value 84.771502 iter 100 value 84.763554 final value 84.763554 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 110.513378 iter 10 value 93.590694 final value 93.590662 converged Fitting Repeat 1 # weights: 507 initial value 127.562915 iter 10 value 116.493718 iter 20 value 109.741687 iter 30 value 107.165588 iter 40 value 105.753560 iter 50 value 104.789056 iter 60 value 104.015014 iter 70 value 103.897788 iter 80 value 102.759514 iter 90 value 101.780006 iter 100 value 101.168889 final value 101.168889 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 154.124347 iter 10 value 120.373157 iter 20 value 111.243699 iter 30 value 109.416167 iter 40 value 107.433508 iter 50 value 106.066180 iter 60 value 105.451271 iter 70 value 104.492074 iter 80 value 102.607231 iter 90 value 101.743614 iter 100 value 101.107465 final value 101.107465 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 170.111852 iter 10 value 119.031909 iter 20 value 112.685943 iter 30 value 108.262982 iter 40 value 107.399815 iter 50 value 105.472514 iter 60 value 103.509600 iter 70 value 103.208952 iter 80 value 101.390535 iter 90 value 101.076526 iter 100 value 100.748769 final value 100.748769 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 134.460977 iter 10 value 120.459008 iter 20 value 106.309365 iter 30 value 106.106120 iter 40 value 105.447386 iter 50 value 104.972224 iter 60 value 104.042708 iter 70 value 102.116692 iter 80 value 101.264537 iter 90 value 100.761505 iter 100 value 100.598718 final value 100.598718 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 130.373239 iter 10 value 117.951012 iter 20 value 110.617004 iter 30 value 106.150830 iter 40 value 105.597938 iter 50 value 103.149072 iter 60 value 102.264493 iter 70 value 101.513761 iter 80 value 101.121350 iter 90 value 101.055748 iter 100 value 101.018890 final value 101.018890 stopped after 100 iterations svmRadial ranger Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases RUNIT TEST PROTOCOL -- Fri May 31 04:42:27 2024 *********************************************** Number of test functions: 7 Number of errors: 0 Number of failures: 0 1 Test Suite : HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures Number of test functions: 7 Number of errors: 0 Number of failures: 0 Warning messages: 1: `repeats` has no meaning for this resampling method. 2: executing %dopar% sequentially: no parallel backend registered > > > > > proc.time() user system elapsed 43.572 1.365 45.939
HPiP.Rcheck/HPiP-Ex.timings
name | user | system | elapsed | |
FSmethod | 35.359 | 0.875 | 36.238 | |
FreqInteractors | 0.241 | 0.004 | 0.245 | |
calculateAAC | 0.040 | 0.004 | 0.043 | |
calculateAutocor | 0.332 | 0.024 | 0.357 | |
calculateCTDC | 0.080 | 0.004 | 0.084 | |
calculateCTDD | 0.572 | 0.008 | 0.581 | |
calculateCTDT | 0.24 | 0.00 | 0.24 | |
calculateCTriad | 0.378 | 0.016 | 0.394 | |
calculateDC | 0.090 | 0.008 | 0.097 | |
calculateF | 0.310 | 0.008 | 0.317 | |
calculateKSAAP | 0.093 | 0.004 | 0.096 | |
calculateQD_Sm | 1.680 | 0.027 | 1.708 | |
calculateTC | 1.533 | 0.148 | 1.681 | |
calculateTC_Sm | 0.279 | 0.004 | 0.283 | |
corr_plot | 35.422 | 0.392 | 35.820 | |
enrichfindP | 0.498 | 0.052 | 8.737 | |
enrichfind_hp | 0.098 | 0.012 | 1.130 | |
enrichplot | 0.363 | 0.008 | 0.371 | |
filter_missing_values | 0.001 | 0.000 | 0.002 | |
getFASTA | 0.447 | 0.016 | 4.478 | |
getHPI | 0.000 | 0.001 | 0.001 | |
get_negativePPI | 0.000 | 0.002 | 0.002 | |
get_positivePPI | 0 | 0 | 0 | |
impute_missing_data | 0.000 | 0.002 | 0.002 | |
plotPPI | 0.072 | 0.005 | 0.078 | |
pred_ensembel | 14.100 | 0.593 | 11.469 | |
var_imp | 37.318 | 1.260 | 38.579 | |