Back to Multiple platform build/check report for BioC 3.19: simplified long |
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This page was generated on 2024-07-24 09:03 -0400 (Wed, 24 Jul 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4747 |
palomino7 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4489 |
merida1 | macOS 12.7.5 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4518 |
kjohnson1 | macOS 13.6.6 Ventura | arm64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4467 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 987/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
HPiP 1.10.0 (landing page) Matineh Rahmatbakhsh
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino7 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 12.7.5 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kjohnson1 | macOS 13.6.6 Ventura / arm64 | OK | OK | OK | OK | |||||||||
To the developers/maintainers of the HPiP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: HPiP |
Version: 1.10.0 |
Command: /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings HPiP_1.10.0.tar.gz |
StartedAt: 2024-07-22 01:18:12 -0400 (Mon, 22 Jul 2024) |
EndedAt: 2024-07-22 01:31:56 -0400 (Mon, 22 Jul 2024) |
EllapsedTime: 823.9 seconds |
RetCode: 0 |
Status: OK |
CheckDir: HPiP.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:HPiP.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings HPiP_1.10.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/home/biocbuild/bbs-3.19-bioc/meat/HPiP.Rcheck’ * using R version 4.4.1 (2024-06-14) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0 * running under: Ubuntu 22.04.4 LTS * using session charset: UTF-8 * checking for file ‘HPiP/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘HPiP’ version ‘1.10.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘HPiP’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE License stub is invalid DCF. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking loading without being on the library search path ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE checkRd: (-1) getHPI.Rd:29: Lost braces 29 | then the Kronecker product is the code{(pm × qn)} block matrix | ^ * checking Rd metadata ... OK * checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: ‘ftrCOOL’ * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking R/sysdata.rda ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed var_imp 35.944 1.104 37.089 corr_plot 34.447 0.460 34.972 FSmethod 33.984 0.666 34.652 pred_ensembel 13.480 0.711 10.906 enrichfindP 0.455 0.035 8.728 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘runTests.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... OK * checking PDF version of manual ... OK * DONE Status: 3 NOTEs See ‘/home/biocbuild/bbs-3.19-bioc/meat/HPiP.Rcheck/00check.log’ for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.19-bioc/R/site-library’ * installing *source* package ‘HPiP’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R version 4.4.1 (2024-06-14) -- "Race for Your Life" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: x86_64-pc-linux-gnu R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > BiocGenerics:::testPackage('HPiP') No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE avNNet Loading required package: ggplot2 Loading required package: lattice Fitting Repeat 1 # weights: 103 initial value 97.453057 final value 94.484211 converged Fitting Repeat 2 # weights: 103 initial value 100.771286 final value 94.452424 converged Fitting Repeat 3 # weights: 103 initial value 96.633163 final value 94.484211 converged Fitting Repeat 4 # weights: 103 initial value 95.256934 final value 94.484211 converged Fitting Repeat 5 # weights: 103 initial value 112.933662 final value 94.484211 converged Fitting Repeat 1 # weights: 305 initial value 107.517560 iter 10 value 94.275364 final value 94.275362 converged Fitting Repeat 2 # weights: 305 initial value 97.297644 final value 94.484211 converged Fitting Repeat 3 # weights: 305 initial value 106.926173 final value 94.484211 converged Fitting Repeat 4 # weights: 305 initial value 101.245260 iter 10 value 91.213296 iter 20 value 91.198760 final value 91.198725 converged Fitting Repeat 5 # weights: 305 initial value 123.463973 iter 10 value 94.275346 iter 10 value 94.275345 iter 10 value 94.275345 final value 94.275345 converged Fitting Repeat 1 # weights: 507 initial value 96.563148 final value 94.275362 converged Fitting Repeat 2 # weights: 507 initial value 106.320976 final value 94.088890 converged Fitting Repeat 3 # weights: 507 initial value 105.586706 iter 10 value 94.118836 iter 20 value 94.101618 final value 94.101526 converged Fitting Repeat 4 # weights: 507 initial value 99.194632 final value 94.484211 converged Fitting Repeat 5 # weights: 507 initial value 102.848183 final value 94.484211 converged Fitting Repeat 1 # weights: 103 initial value 104.504344 iter 10 value 94.402162 iter 20 value 88.102923 iter 30 value 87.276903 iter 40 value 84.297593 iter 50 value 82.871306 iter 60 value 82.326449 iter 70 value 82.273980 iter 80 value 82.030162 iter 90 value 81.735451 final value 81.735033 converged Fitting Repeat 2 # weights: 103 initial value 102.029567 iter 10 value 94.486501 iter 20 value 94.386305 iter 30 value 94.063893 iter 40 value 93.820340 iter 50 value 86.755263 iter 60 value 85.870753 iter 70 value 85.524164 iter 80 value 85.265457 iter 90 value 85.126737 iter 100 value 85.075160 final value 85.075160 stopped after 100 iterations Fitting Repeat 3 # weights: 103 initial value 97.377071 iter 10 value 94.489064 iter 20 value 94.072099 iter 30 value 94.017978 iter 40 value 93.459173 iter 50 value 86.983116 iter 60 value 83.195117 iter 70 value 82.462209 iter 80 value 82.290320 iter 90 value 81.932425 iter 100 value 81.913589 final value 81.913589 stopped after 100 iterations Fitting Repeat 4 # weights: 103 initial value 100.751873 iter 10 value 94.436174 iter 20 value 93.959874 iter 30 value 90.792721 iter 40 value 89.371494 iter 50 value 88.592642 iter 60 value 88.429420 iter 70 value 82.917416 iter 80 value 82.481007 iter 90 value 81.959443 iter 100 value 81.735169 final value 81.735169 stopped after 100 iterations Fitting Repeat 5 # weights: 103 initial value 105.379942 iter 10 value 93.751487 iter 20 value 87.447327 iter 30 value 86.630767 iter 40 value 84.735631 iter 50 value 84.334775 iter 60 value 84.130305 iter 70 value 84.100718 final value 84.100654 converged Fitting Repeat 1 # weights: 305 initial value 125.033244 iter 10 value 94.576828 iter 20 value 92.309846 iter 30 value 88.624138 iter 40 value 85.887399 iter 50 value 85.653871 iter 60 value 83.983938 iter 70 value 82.398919 iter 80 value 81.561174 iter 90 value 81.303427 iter 100 value 80.988264 final value 80.988264 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 108.382442 iter 10 value 94.616998 iter 20 value 94.484748 iter 30 value 94.354235 iter 40 value 94.257233 iter 50 value 93.841733 iter 60 value 93.799464 iter 70 value 89.895700 iter 80 value 88.939767 iter 90 value 85.515352 iter 100 value 83.746291 final value 83.746291 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 109.148326 iter 10 value 94.494626 iter 20 value 94.370251 iter 30 value 90.269915 iter 40 value 87.588354 iter 50 value 83.996767 iter 60 value 81.748613 iter 70 value 80.689354 iter 80 value 80.513387 iter 90 value 80.497272 iter 100 value 80.429297 final value 80.429297 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 105.834348 iter 10 value 94.495820 iter 20 value 90.648916 iter 30 value 85.603243 iter 40 value 85.269857 iter 50 value 84.315963 iter 60 value 83.492720 iter 70 value 82.962817 iter 80 value 82.775039 iter 90 value 82.524289 iter 100 value 82.442427 final value 82.442427 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 112.689850 iter 10 value 94.433721 iter 20 value 91.677489 iter 30 value 86.261797 iter 40 value 83.726207 iter 50 value 82.766835 iter 60 value 81.387956 iter 70 value 80.729966 iter 80 value 80.536246 iter 90 value 80.487515 iter 100 value 80.348934 final value 80.348934 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 109.363133 iter 10 value 94.457634 iter 20 value 93.951071 iter 30 value 87.310441 iter 40 value 85.245364 iter 50 value 82.840901 iter 60 value 81.999870 iter 70 value 81.468285 iter 80 value 80.995839 iter 90 value 80.786973 iter 100 value 80.656314 final value 80.656314 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 114.493175 iter 10 value 94.537564 iter 20 value 89.889277 iter 30 value 86.571807 iter 40 value 85.452709 iter 50 value 83.209483 iter 60 value 82.152048 iter 70 value 81.249361 iter 80 value 80.707922 iter 90 value 80.505593 iter 100 value 80.484004 final value 80.484004 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 102.866072 iter 10 value 94.558364 iter 20 value 93.677741 iter 30 value 86.718509 iter 40 value 85.415042 iter 50 value 84.607684 iter 60 value 84.073754 iter 70 value 82.231362 iter 80 value 81.504618 iter 90 value 81.148348 iter 100 value 81.050440 final value 81.050440 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 126.483737 iter 10 value 94.450900 iter 20 value 91.400959 iter 30 value 87.278875 iter 40 value 85.945176 iter 50 value 85.579638 iter 60 value 85.353035 iter 70 value 84.719754 iter 80 value 83.267733 iter 90 value 81.600546 iter 100 value 80.968155 final value 80.968155 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 113.401655 iter 10 value 96.766090 iter 20 value 92.977454 iter 30 value 87.918798 iter 40 value 86.400468 iter 50 value 85.186809 iter 60 value 82.318184 iter 70 value 81.809052 iter 80 value 81.331028 iter 90 value 81.067054 iter 100 value 80.693523 final value 80.693523 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 100.496322 final value 94.277117 converged Fitting Repeat 2 # weights: 103 initial value 96.249871 final value 94.485846 converged Fitting Repeat 3 # weights: 103 initial value 103.349382 iter 10 value 94.485927 final value 94.484225 converged Fitting Repeat 4 # weights: 103 initial value 104.815563 iter 10 value 94.485861 iter 20 value 94.484229 iter 30 value 93.185893 iter 40 value 91.324029 final value 91.322724 converged Fitting Repeat 5 # weights: 103 initial value 95.448643 final value 94.485892 converged Fitting Repeat 1 # weights: 305 initial value 104.828326 iter 10 value 94.491614 iter 20 value 94.491110 iter 30 value 94.487797 iter 40 value 94.396282 iter 50 value 88.701743 iter 60 value 88.641895 iter 70 value 88.624014 iter 80 value 88.591084 iter 90 value 88.586027 iter 100 value 88.223099 final value 88.223099 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 110.387479 iter 10 value 94.488990 iter 20 value 92.207475 iter 30 value 85.101028 iter 40 value 85.097411 iter 50 value 85.096242 iter 60 value 85.093757 iter 70 value 85.093170 iter 80 value 84.862166 iter 90 value 82.884058 iter 100 value 80.538636 final value 80.538636 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 98.004609 iter 10 value 91.074341 iter 20 value 91.065378 iter 30 value 90.535717 iter 40 value 90.533284 iter 50 value 90.533048 iter 60 value 90.532283 final value 90.532232 converged Fitting Repeat 4 # weights: 305 initial value 95.665316 iter 10 value 93.927555 iter 20 value 93.926004 iter 30 value 93.925160 iter 30 value 93.925160 final value 93.925160 converged Fitting Repeat 5 # weights: 305 initial value 127.962429 iter 10 value 94.489296 iter 20 value 92.896161 iter 30 value 86.467027 iter 40 value 80.174688 iter 50 value 79.885705 iter 60 value 79.840273 iter 70 value 79.783245 iter 80 value 79.732446 iter 90 value 79.697143 iter 100 value 79.695571 final value 79.695571 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 97.731284 iter 10 value 94.491805 iter 20 value 94.484254 iter 30 value 94.221494 iter 40 value 85.611125 iter 50 value 85.276461 iter 60 value 85.253964 iter 70 value 85.253446 iter 70 value 85.253446 final value 85.253446 converged Fitting Repeat 2 # weights: 507 initial value 95.365952 iter 10 value 94.445052 iter 20 value 92.879978 final value 89.145046 converged Fitting Repeat 3 # weights: 507 initial value 107.563237 iter 10 value 93.989213 iter 20 value 93.896062 iter 30 value 93.842485 iter 40 value 93.496477 iter 50 value 90.273140 iter 60 value 89.848928 iter 70 value 89.817761 iter 80 value 89.815580 iter 90 value 89.398045 iter 100 value 89.309349 final value 89.309349 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 114.035837 iter 10 value 93.106521 iter 20 value 93.102474 iter 30 value 85.068389 iter 40 value 85.053323 iter 50 value 85.051528 iter 60 value 85.036791 iter 70 value 83.219457 iter 80 value 83.214129 iter 90 value 83.210484 iter 100 value 83.040467 final value 83.040467 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 95.142364 iter 10 value 94.491091 iter 20 value 93.248211 iter 30 value 91.871683 iter 40 value 85.890325 iter 50 value 82.782058 iter 60 value 82.427782 iter 70 value 81.466242 iter 80 value 80.609524 iter 90 value 80.552049 iter 100 value 80.550799 final value 80.550799 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 96.881021 final value 94.484211 converged Fitting Repeat 2 # weights: 103 initial value 102.635111 final value 94.484211 converged Fitting Repeat 3 # weights: 103 initial value 98.914784 final value 94.484211 converged Fitting Repeat 4 # weights: 103 initial value 96.899065 final value 94.484211 converged Fitting Repeat 5 # weights: 103 initial value 95.133356 final value 94.484211 converged Fitting Repeat 1 # weights: 305 initial value 95.736307 iter 10 value 94.386930 iter 20 value 94.385584 iter 20 value 94.385584 iter 20 value 94.385584 final value 94.385584 converged Fitting Repeat 2 # weights: 305 initial value 100.382379 final value 94.484211 converged Fitting Repeat 3 # weights: 305 initial value 99.472885 iter 10 value 94.392008 final value 94.391992 converged Fitting Repeat 4 # weights: 305 initial value 102.943635 final value 94.484211 converged Fitting Repeat 5 # weights: 305 initial value 102.438111 final value 94.484211 converged Fitting Repeat 1 # weights: 507 initial value 106.717648 iter 10 value 94.432114 final value 94.428837 converged Fitting Repeat 2 # weights: 507 initial value 98.621988 final value 94.445714 converged Fitting Repeat 3 # weights: 507 initial value 97.431681 final value 94.428839 converged Fitting Repeat 4 # weights: 507 initial value 116.575490 final value 94.484211 converged Fitting Repeat 5 # weights: 507 initial value 108.770550 final value 94.484211 converged Fitting Repeat 1 # weights: 103 initial value 104.141536 iter 10 value 94.455409 iter 20 value 88.526384 iter 30 value 88.291688 iter 40 value 88.215841 iter 50 value 87.806815 iter 60 value 86.864562 iter 70 value 82.957989 iter 80 value 82.890851 iter 90 value 82.854522 iter 100 value 82.542205 final value 82.542205 stopped after 100 iterations Fitting Repeat 2 # weights: 103 initial value 103.104122 iter 10 value 94.513702 iter 20 value 94.486276 iter 30 value 94.237671 iter 40 value 90.901505 iter 50 value 85.617240 iter 60 value 84.843109 iter 70 value 84.398598 iter 80 value 83.982598 iter 90 value 83.954304 iter 100 value 83.858067 final value 83.858067 stopped after 100 iterations Fitting Repeat 3 # weights: 103 initial value 111.800562 iter 10 value 94.478948 iter 20 value 93.236325 iter 30 value 86.171015 iter 40 value 84.602695 iter 50 value 84.171414 iter 60 value 83.943952 iter 70 value 83.858372 iter 80 value 83.833096 final value 83.833079 converged Fitting Repeat 4 # weights: 103 initial value 102.366125 iter 10 value 94.626359 iter 20 value 84.345357 iter 30 value 82.939139 iter 40 value 82.608699 iter 50 value 82.596463 iter 60 value 82.552074 iter 70 value 82.488250 iter 80 value 82.480163 iter 90 value 82.462742 final value 82.462672 converged Fitting Repeat 5 # weights: 103 initial value 101.316641 iter 10 value 92.628953 iter 20 value 84.304958 iter 30 value 84.015553 iter 40 value 83.879968 iter 50 value 83.840888 iter 60 value 83.790820 iter 60 value 83.790819 iter 60 value 83.790819 final value 83.790819 converged Fitting Repeat 1 # weights: 305 initial value 105.616854 iter 10 value 94.530140 iter 20 value 93.783833 iter 30 value 88.271723 iter 40 value 84.936093 iter 50 value 84.147665 iter 60 value 83.111211 iter 70 value 82.858664 iter 80 value 82.552106 iter 90 value 82.275226 iter 100 value 82.206063 final value 82.206063 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 110.486880 iter 10 value 94.535828 iter 20 value 94.458372 iter 30 value 89.720874 iter 40 value 86.939008 iter 50 value 85.909846 iter 60 value 85.496661 iter 70 value 83.977362 iter 80 value 82.041771 iter 90 value 81.240241 iter 100 value 80.694350 final value 80.694350 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 102.701107 iter 10 value 93.656299 iter 20 value 89.340307 iter 30 value 86.971188 iter 40 value 84.138055 iter 50 value 83.839363 iter 60 value 82.263904 iter 70 value 81.150582 iter 80 value 80.523167 iter 90 value 80.336071 iter 100 value 80.263631 final value 80.263631 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 110.336049 iter 10 value 94.460354 iter 20 value 93.348303 iter 30 value 90.620994 iter 40 value 86.986336 iter 50 value 83.726099 iter 60 value 82.546796 iter 70 value 82.076944 iter 80 value 81.209400 iter 90 value 80.774048 iter 100 value 80.398415 final value 80.398415 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 107.901491 iter 10 value 97.950873 iter 20 value 88.666753 iter 30 value 87.812562 iter 40 value 85.476865 iter 50 value 81.870521 iter 60 value 80.830953 iter 70 value 80.500454 iter 80 value 80.122384 iter 90 value 79.928717 iter 100 value 79.882989 final value 79.882989 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 117.659520 iter 10 value 94.520562 iter 20 value 85.078322 iter 30 value 83.664147 iter 40 value 82.755517 iter 50 value 82.700176 iter 60 value 82.095017 iter 70 value 81.997486 iter 80 value 81.963325 iter 90 value 81.573410 iter 100 value 81.234111 final value 81.234111 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 121.178082 iter 10 value 94.288019 iter 20 value 88.650090 iter 30 value 88.088004 iter 40 value 87.846476 iter 50 value 86.482252 iter 60 value 82.840596 iter 70 value 81.420692 iter 80 value 80.496118 iter 90 value 80.230934 iter 100 value 79.977596 final value 79.977596 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 103.354914 iter 10 value 94.703922 iter 20 value 94.100866 iter 30 value 86.252116 iter 40 value 83.342882 iter 50 value 82.853900 iter 60 value 82.545169 iter 70 value 81.535818 iter 80 value 81.201973 iter 90 value 81.127671 iter 100 value 81.101336 final value 81.101336 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 113.179254 iter 10 value 94.748051 iter 20 value 93.990210 iter 30 value 89.355792 iter 40 value 83.888080 iter 50 value 83.578297 iter 60 value 83.054129 iter 70 value 81.882565 iter 80 value 81.263313 iter 90 value 81.041726 iter 100 value 80.620770 final value 80.620770 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 105.481822 iter 10 value 94.368291 iter 20 value 91.475637 iter 30 value 88.220192 iter 40 value 87.300027 iter 50 value 86.074465 iter 60 value 84.608507 iter 70 value 82.816552 iter 80 value 82.284341 iter 90 value 82.072724 iter 100 value 81.990379 final value 81.990379 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 97.308781 final value 94.485872 converged Fitting Repeat 2 # weights: 103 initial value 98.125391 final value 94.485734 converged Fitting Repeat 3 # weights: 103 initial value 99.368332 iter 10 value 94.485674 iter 20 value 94.484188 iter 30 value 94.280490 iter 40 value 92.804874 iter 50 value 92.697791 iter 60 value 92.697007 iter 60 value 92.697006 iter 60 value 92.697006 final value 92.697006 converged Fitting Repeat 4 # weights: 103 initial value 97.600973 final value 94.485929 converged Fitting Repeat 5 # weights: 103 initial value 95.234252 iter 10 value 94.485877 iter 20 value 94.484255 final value 94.484215 converged Fitting Repeat 1 # weights: 305 initial value 102.392427 iter 10 value 94.471613 iter 20 value 94.419461 iter 30 value 94.163390 iter 40 value 87.490665 iter 50 value 85.794922 iter 60 value 85.648317 iter 70 value 85.645621 iter 80 value 85.643591 iter 90 value 85.639022 iter 100 value 85.415202 final value 85.415202 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 105.180299 iter 10 value 89.230345 iter 20 value 88.561002 iter 30 value 88.554131 final value 88.553848 converged Fitting Repeat 3 # weights: 305 initial value 99.309738 iter 10 value 94.486675 iter 20 value 94.478067 iter 30 value 94.077677 iter 40 value 88.424499 final value 88.152714 converged Fitting Repeat 4 # weights: 305 initial value 105.352156 iter 10 value 94.489424 iter 20 value 94.484641 final value 94.484636 converged Fitting Repeat 5 # weights: 305 initial value 99.559458 iter 10 value 94.472288 iter 20 value 94.322918 iter 30 value 93.311334 iter 40 value 86.460336 iter 50 value 85.784501 iter 60 value 85.783948 iter 70 value 85.707894 iter 80 value 85.374830 iter 80 value 85.374829 iter 80 value 85.374829 final value 85.374829 converged Fitting Repeat 1 # weights: 507 initial value 118.607854 iter 10 value 94.474745 iter 20 value 94.467470 final value 94.467414 converged Fitting Repeat 2 # weights: 507 initial value 134.364287 iter 10 value 94.497992 iter 20 value 94.467619 iter 30 value 94.103992 iter 40 value 88.761512 iter 50 value 88.429355 iter 60 value 84.711202 iter 70 value 83.917170 iter 80 value 83.875313 iter 90 value 83.863415 iter 100 value 82.794801 final value 82.794801 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 112.276793 iter 10 value 94.394010 iter 20 value 94.392583 iter 30 value 87.304672 iter 40 value 85.845790 iter 50 value 85.216353 iter 60 value 85.208823 iter 60 value 85.208823 final value 85.208823 converged Fitting Repeat 4 # weights: 507 initial value 95.482680 iter 10 value 94.474995 iter 20 value 91.991848 iter 30 value 88.120708 iter 40 value 87.311873 iter 50 value 85.806868 iter 60 value 85.174560 iter 70 value 84.215025 iter 80 value 84.032332 iter 90 value 83.978941 iter 100 value 82.617055 final value 82.617055 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 102.275068 iter 10 value 94.474983 iter 20 value 94.370153 iter 30 value 94.345393 iter 40 value 91.369026 iter 50 value 81.027276 iter 60 value 80.725567 iter 70 value 80.666077 iter 80 value 80.632102 final value 80.632051 converged Fitting Repeat 1 # weights: 103 initial value 104.361287 final value 94.052910 converged Fitting Repeat 2 # weights: 103 initial value 96.266418 final value 94.052910 converged Fitting Repeat 3 # weights: 103 initial value 98.678587 final value 94.052910 converged Fitting Repeat 4 # weights: 103 initial value 100.152349 final value 94.052910 converged Fitting Repeat 5 # weights: 103 initial value 95.785451 final value 94.052910 converged Fitting Repeat 1 # weights: 305 initial value 101.284221 final value 94.052910 converged Fitting Repeat 2 # weights: 305 initial value 100.813145 final value 94.052910 converged Fitting Repeat 3 # weights: 305 initial value 102.658458 final value 94.052910 converged Fitting Repeat 4 # weights: 305 initial value 97.025541 final value 94.052910 converged Fitting Repeat 5 # weights: 305 initial value 104.809573 final value 93.900000 converged Fitting Repeat 1 # weights: 507 initial value 102.185841 final value 93.288889 converged Fitting Repeat 2 # weights: 507 initial value 100.842157 final value 94.052910 converged Fitting Repeat 3 # weights: 507 initial value 106.380730 iter 10 value 93.312211 iter 20 value 93.300326 iter 30 value 93.299763 final value 93.299758 converged Fitting Repeat 4 # weights: 507 initial value 113.441250 final value 94.011561 converged Fitting Repeat 5 # weights: 507 initial value 123.353916 iter 10 value 93.370426 iter 20 value 93.330516 final value 93.330102 converged Fitting Repeat 1 # weights: 103 initial value 104.458302 iter 10 value 94.042914 iter 20 value 87.823056 iter 30 value 84.722996 iter 40 value 84.654889 iter 50 value 84.616411 final value 84.591595 converged Fitting Repeat 2 # weights: 103 initial value 96.571497 iter 10 value 94.056845 iter 20 value 93.795490 iter 30 value 84.741724 iter 40 value 84.342531 iter 50 value 83.429846 iter 60 value 82.576074 iter 70 value 81.951298 iter 80 value 81.826456 final value 81.826433 converged Fitting Repeat 3 # weights: 103 initial value 108.951755 iter 10 value 93.984481 iter 20 value 92.603649 iter 30 value 91.181463 iter 40 value 90.763088 iter 50 value 84.509645 iter 60 value 83.733648 iter 70 value 82.983371 iter 80 value 82.423567 iter 90 value 82.031229 iter 100 value 81.827514 final value 81.827514 stopped after 100 iterations Fitting Repeat 4 # weights: 103 initial value 106.904769 iter 10 value 94.070405 iter 20 value 94.019610 iter 30 value 92.470337 iter 40 value 92.071918 iter 50 value 91.725878 iter 60 value 90.908700 iter 70 value 90.766405 iter 80 value 87.780445 iter 90 value 87.338812 iter 100 value 85.452315 final value 85.452315 stopped after 100 iterations Fitting Repeat 5 # weights: 103 initial value 104.064139 iter 10 value 93.595002 iter 20 value 90.281960 iter 30 value 85.319734 iter 40 value 84.873709 iter 50 value 84.123150 iter 60 value 83.402693 iter 70 value 82.702632 iter 80 value 82.144029 iter 90 value 81.869215 iter 100 value 81.660226 final value 81.660226 stopped after 100 iterations Fitting Repeat 1 # weights: 305 initial value 102.763361 iter 10 value 94.079441 iter 20 value 87.441916 iter 30 value 84.050842 iter 40 value 83.597932 iter 50 value 82.224011 iter 60 value 81.941293 iter 70 value 81.285741 iter 80 value 80.855723 iter 90 value 80.770835 iter 100 value 80.758976 final value 80.758976 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 139.672813 iter 10 value 93.915566 iter 20 value 88.543778 iter 30 value 84.648870 iter 40 value 84.210838 iter 50 value 82.759142 iter 60 value 82.421070 iter 70 value 82.084891 iter 80 value 81.680182 iter 90 value 81.666464 iter 100 value 81.651098 final value 81.651098 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 114.452657 iter 10 value 94.204830 iter 20 value 88.323560 iter 30 value 88.073152 iter 40 value 87.558325 iter 50 value 85.115472 iter 60 value 83.678634 iter 70 value 82.115475 iter 80 value 80.880684 iter 90 value 80.544553 iter 100 value 80.209638 final value 80.209638 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 123.184397 iter 10 value 94.058649 iter 20 value 93.269343 iter 30 value 87.230179 iter 40 value 84.807185 iter 50 value 84.055442 iter 60 value 83.161014 iter 70 value 82.703232 iter 80 value 82.434834 iter 90 value 81.862706 iter 100 value 80.898434 final value 80.898434 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 105.103328 iter 10 value 94.076930 iter 20 value 92.798992 iter 30 value 91.123478 iter 40 value 87.094938 iter 50 value 83.814271 iter 60 value 82.949613 iter 70 value 82.758019 iter 80 value 82.638152 iter 90 value 82.440945 iter 100 value 82.406417 final value 82.406417 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 109.852004 iter 10 value 94.070007 iter 20 value 87.994988 iter 30 value 85.031701 iter 40 value 83.836778 iter 50 value 83.111892 iter 60 value 82.627402 iter 70 value 82.346800 iter 80 value 81.772454 iter 90 value 80.949337 iter 100 value 80.202353 final value 80.202353 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 108.763056 iter 10 value 94.378152 iter 20 value 87.708841 iter 30 value 86.521861 iter 40 value 86.136691 iter 50 value 84.682821 iter 60 value 84.375677 iter 70 value 84.315706 iter 80 value 84.272828 iter 90 value 84.253579 iter 100 value 84.144730 final value 84.144730 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 103.894610 iter 10 value 93.280482 iter 20 value 89.546944 iter 30 value 86.277946 iter 40 value 85.294914 iter 50 value 83.314580 iter 60 value 82.194322 iter 70 value 81.997354 iter 80 value 81.730701 iter 90 value 81.027747 iter 100 value 80.567175 final value 80.567175 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 105.866093 iter 10 value 93.987431 iter 20 value 91.013111 iter 30 value 85.740585 iter 40 value 83.420076 iter 50 value 82.933618 iter 60 value 81.458011 iter 70 value 80.830805 iter 80 value 80.587018 iter 90 value 80.467231 iter 100 value 80.428486 final value 80.428486 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 113.102096 iter 10 value 92.250747 iter 20 value 86.165467 iter 30 value 85.373351 iter 40 value 81.720580 iter 50 value 80.782194 iter 60 value 80.731591 iter 70 value 80.568436 iter 80 value 80.397716 iter 90 value 80.287308 iter 100 value 80.246756 final value 80.246756 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 104.367885 final value 94.034608 converged Fitting Repeat 2 # weights: 103 initial value 100.480182 final value 94.054519 converged Fitting Repeat 3 # weights: 103 initial value 98.662122 final value 94.054549 converged Fitting Repeat 4 # weights: 103 initial value 95.879370 final value 94.054376 converged Fitting Repeat 5 # weights: 103 initial value 101.754829 iter 10 value 94.034568 iter 20 value 94.032981 iter 30 value 93.186616 iter 40 value 85.969986 iter 50 value 84.027573 iter 60 value 82.903399 iter 70 value 81.973067 iter 80 value 81.645074 iter 90 value 81.643759 iter 90 value 81.643759 final value 81.643759 converged Fitting Repeat 1 # weights: 305 initial value 95.429299 iter 10 value 94.037997 iter 20 value 94.033692 final value 94.033658 converged Fitting Repeat 2 # weights: 305 initial value 100.451731 iter 10 value 94.057778 iter 20 value 94.042366 iter 30 value 86.199385 iter 40 value 84.856051 iter 50 value 84.838767 final value 84.838558 converged Fitting Repeat 3 # weights: 305 initial value 101.039966 iter 10 value 93.651991 iter 20 value 92.007103 iter 30 value 88.949363 iter 40 value 88.927744 iter 50 value 88.925514 iter 60 value 87.713937 iter 70 value 84.809418 iter 80 value 83.228648 iter 90 value 83.170379 iter 100 value 83.164389 final value 83.164389 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 107.580848 iter 10 value 94.057931 iter 20 value 94.052961 iter 30 value 86.274041 iter 40 value 85.422068 iter 50 value 84.182493 iter 60 value 83.459487 iter 70 value 82.771102 iter 80 value 81.421560 iter 90 value 81.093505 iter 100 value 80.983761 final value 80.983761 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 95.389422 iter 10 value 94.057518 iter 20 value 93.977838 iter 30 value 93.558802 iter 40 value 93.072694 iter 50 value 93.030877 final value 93.029465 converged Fitting Repeat 1 # weights: 507 initial value 117.582146 iter 10 value 92.891798 iter 20 value 90.791982 iter 30 value 90.742710 iter 40 value 90.679533 iter 50 value 90.678902 iter 60 value 90.672995 iter 70 value 90.672349 final value 90.672199 converged Fitting Repeat 2 # weights: 507 initial value 109.295604 iter 10 value 94.040685 iter 20 value 93.671565 iter 30 value 85.377904 final value 85.376777 converged Fitting Repeat 3 # weights: 507 initial value 116.164910 iter 10 value 93.732855 iter 20 value 92.704168 iter 30 value 88.472940 iter 40 value 87.441636 iter 50 value 86.793200 iter 60 value 86.618896 iter 70 value 86.616961 iter 80 value 86.608570 iter 90 value 82.693007 iter 100 value 80.921837 final value 80.921837 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 99.736571 iter 10 value 94.040890 iter 20 value 94.034644 iter 30 value 93.112018 iter 40 value 86.414421 iter 50 value 84.590464 iter 60 value 83.917017 iter 70 value 83.767972 final value 83.764977 converged Fitting Repeat 5 # weights: 507 initial value 101.053548 iter 10 value 90.285183 iter 20 value 90.024389 iter 30 value 89.996494 iter 30 value 89.996493 final value 89.996493 converged Fitting Repeat 1 # weights: 103 initial value 94.151326 final value 94.032967 converged Fitting Repeat 2 # weights: 103 initial value 94.719023 final value 94.032967 converged Fitting Repeat 3 # weights: 103 initial value 103.674788 final value 94.032967 converged Fitting Repeat 4 # weights: 103 initial value 107.929020 final value 94.052910 converged Fitting Repeat 5 # weights: 103 initial value 99.849235 final value 94.052910 converged Fitting Repeat 1 # weights: 305 initial value 96.366594 iter 10 value 93.670692 iter 20 value 93.521107 final value 93.324531 converged Fitting Repeat 2 # weights: 305 initial value 96.934282 final value 94.052910 converged Fitting Repeat 3 # weights: 305 initial value 94.152156 final value 93.278282 converged Fitting Repeat 4 # weights: 305 initial value 103.312023 final value 94.032967 converged Fitting Repeat 5 # weights: 305 initial value 95.422194 final value 94.052910 converged Fitting Repeat 1 # weights: 507 initial value 105.872143 iter 10 value 93.697274 final value 93.697146 converged Fitting Repeat 2 # weights: 507 initial value 119.850182 final value 94.052911 converged Fitting Repeat 3 # weights: 507 initial value 95.171892 final value 94.052910 converged Fitting Repeat 4 # weights: 507 initial value 112.500593 iter 10 value 86.427024 iter 20 value 84.398755 iter 30 value 84.395292 final value 84.395208 converged Fitting Repeat 5 # weights: 507 initial value 97.262189 final value 94.052910 converged Fitting Repeat 1 # weights: 103 initial value 106.429200 iter 10 value 93.372946 iter 20 value 92.964950 iter 30 value 92.949581 iter 40 value 92.931808 final value 92.931272 converged Fitting Repeat 2 # weights: 103 initial value 102.752061 iter 10 value 94.055188 iter 20 value 93.994414 iter 30 value 91.318150 iter 40 value 89.246091 iter 50 value 86.661873 iter 60 value 86.147594 iter 70 value 84.234411 iter 80 value 82.695435 iter 90 value 82.628405 final value 82.627433 converged Fitting Repeat 3 # weights: 103 initial value 101.123682 iter 10 value 94.056690 iter 20 value 93.382250 iter 30 value 89.834315 iter 40 value 87.924829 iter 50 value 85.694516 iter 60 value 85.554201 iter 70 value 85.449225 iter 80 value 85.227510 iter 90 value 85.145830 final value 85.142789 converged Fitting Repeat 4 # weights: 103 initial value 100.181031 iter 10 value 93.934190 iter 20 value 91.212619 iter 30 value 90.259283 iter 40 value 86.325140 iter 50 value 85.508082 iter 60 value 84.811076 iter 70 value 83.286787 iter 80 value 83.193101 iter 90 value 83.093146 iter 100 value 82.991096 final value 82.991096 stopped after 100 iterations Fitting Repeat 5 # weights: 103 initial value 103.907701 iter 10 value 94.003324 iter 20 value 89.129462 iter 30 value 87.359691 iter 40 value 85.999133 iter 50 value 85.891965 iter 60 value 85.342301 iter 70 value 85.164918 final value 85.142787 converged Fitting Repeat 1 # weights: 305 initial value 113.541469 iter 10 value 93.690893 iter 20 value 89.600182 iter 30 value 86.311783 iter 40 value 85.571039 iter 50 value 85.256115 iter 60 value 84.958439 iter 70 value 83.261192 iter 80 value 82.814580 iter 90 value 81.621802 iter 100 value 81.361393 final value 81.361393 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 103.289187 iter 10 value 93.914078 iter 20 value 93.185835 iter 30 value 86.400743 iter 40 value 84.096358 iter 50 value 83.628034 iter 60 value 83.167323 iter 70 value 82.906719 iter 80 value 82.799487 iter 90 value 82.729973 iter 100 value 82.622636 final value 82.622636 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 104.514934 iter 10 value 90.840236 iter 20 value 86.523047 iter 30 value 85.895262 iter 40 value 85.674225 iter 50 value 84.049476 iter 60 value 82.687789 iter 70 value 82.198926 iter 80 value 81.957681 iter 90 value 81.924261 iter 100 value 81.693161 final value 81.693161 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 111.334275 iter 10 value 94.133105 iter 20 value 91.496460 iter 30 value 90.524289 iter 40 value 86.463216 iter 50 value 85.968341 iter 60 value 85.507672 iter 70 value 85.164471 iter 80 value 85.035829 iter 90 value 85.016568 iter 100 value 84.964297 final value 84.964297 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 104.115406 iter 10 value 93.011208 iter 20 value 88.209159 iter 30 value 87.575974 iter 40 value 87.318974 iter 50 value 87.211994 iter 60 value 85.655796 iter 70 value 84.224357 iter 80 value 83.838321 iter 90 value 82.908802 iter 100 value 82.553606 final value 82.553606 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 104.410796 iter 10 value 94.129375 iter 20 value 93.934595 iter 30 value 89.855843 iter 40 value 85.620130 iter 50 value 85.230011 iter 60 value 83.614772 iter 70 value 83.315706 iter 80 value 83.074417 iter 90 value 82.042615 iter 100 value 81.244389 final value 81.244389 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 134.314659 iter 10 value 93.749015 iter 20 value 86.739069 iter 30 value 85.235501 iter 40 value 82.804994 iter 50 value 82.371976 iter 60 value 82.097518 iter 70 value 81.660657 iter 80 value 81.009105 iter 90 value 80.870352 iter 100 value 80.824292 final value 80.824292 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 110.616807 iter 10 value 94.443287 iter 20 value 90.907668 iter 30 value 87.365082 iter 40 value 86.344220 iter 50 value 85.981145 iter 60 value 84.851976 iter 70 value 84.063953 iter 80 value 83.882634 iter 90 value 83.730104 iter 100 value 83.372389 final value 83.372389 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 103.210348 iter 10 value 94.118417 iter 20 value 89.346448 iter 30 value 85.379543 iter 40 value 85.052214 iter 50 value 84.838886 iter 60 value 84.685229 iter 70 value 84.153061 iter 80 value 82.464553 iter 90 value 82.196754 iter 100 value 81.929667 final value 81.929667 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 114.260048 iter 10 value 94.364573 iter 20 value 90.487977 iter 30 value 86.876439 iter 40 value 85.922164 iter 50 value 85.056000 iter 60 value 84.917329 iter 70 value 84.901086 iter 80 value 84.752058 iter 90 value 84.254232 iter 100 value 83.040755 final value 83.040755 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 120.754834 final value 94.054292 converged Fitting Repeat 2 # weights: 103 initial value 98.944832 final value 94.054716 converged Fitting Repeat 3 # weights: 103 initial value 100.539240 final value 94.054423 converged Fitting Repeat 4 # weights: 103 initial value 111.883414 final value 94.054278 converged Fitting Repeat 5 # weights: 103 initial value 96.047841 final value 94.054530 converged Fitting Repeat 1 # weights: 305 initial value 94.933129 iter 10 value 94.055336 iter 20 value 94.052949 iter 20 value 94.052948 iter 20 value 94.052948 final value 94.052948 converged Fitting Repeat 2 # weights: 305 initial value 99.256016 iter 10 value 94.080255 iter 20 value 94.056391 iter 30 value 89.077372 iter 40 value 87.078208 iter 50 value 85.712984 iter 60 value 85.568272 iter 70 value 83.864807 iter 80 value 83.259493 iter 90 value 83.223556 iter 100 value 83.219709 final value 83.219709 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 110.340996 iter 10 value 88.221659 iter 20 value 85.085562 iter 30 value 84.835819 iter 40 value 84.834296 iter 50 value 84.831495 iter 60 value 84.829669 iter 60 value 84.829669 final value 84.829669 converged Fitting Repeat 4 # weights: 305 initial value 101.004616 iter 10 value 94.057202 iter 20 value 93.413031 iter 30 value 85.461557 iter 40 value 85.266413 iter 50 value 85.266039 final value 85.265615 converged Fitting Repeat 5 # weights: 305 initial value 104.806555 iter 10 value 91.800624 iter 20 value 84.909361 iter 30 value 84.908234 iter 40 value 84.873880 iter 50 value 84.860911 iter 60 value 84.860277 iter 70 value 84.859742 iter 80 value 84.295650 iter 90 value 83.972085 iter 100 value 83.971808 final value 83.971808 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 102.061306 iter 10 value 94.040711 iter 20 value 94.034183 iter 30 value 88.030394 iter 40 value 84.875828 iter 50 value 84.840926 iter 60 value 84.349517 iter 70 value 83.863300 iter 80 value 82.002713 iter 90 value 81.305164 iter 100 value 81.197738 final value 81.197738 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 100.772601 iter 10 value 94.041671 iter 20 value 91.550525 iter 30 value 86.621146 iter 40 value 86.557886 iter 50 value 86.554685 iter 60 value 85.290309 final value 85.266251 converged Fitting Repeat 3 # weights: 507 initial value 100.559002 iter 10 value 93.286676 iter 20 value 93.241772 iter 30 value 92.247685 iter 40 value 91.751551 iter 50 value 91.723330 final value 91.723062 converged Fitting Repeat 4 # weights: 507 initial value 96.348040 iter 10 value 94.054321 final value 94.033391 converged Fitting Repeat 5 # weights: 507 initial value 97.772218 iter 10 value 94.040853 iter 20 value 93.391558 iter 30 value 86.840975 iter 40 value 86.728578 iter 50 value 86.275522 iter 60 value 86.099975 iter 70 value 84.965755 iter 80 value 84.251631 iter 90 value 83.908590 iter 100 value 83.860677 final value 83.860677 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 97.391082 final value 94.484211 converged Fitting Repeat 2 # weights: 103 initial value 98.806767 final value 94.484211 converged Fitting Repeat 3 # weights: 103 initial value 113.247789 final value 94.484211 converged Fitting Repeat 4 # weights: 103 initial value 100.890087 iter 10 value 91.209947 final value 91.088745 converged Fitting Repeat 5 # weights: 103 initial value 96.068062 final value 94.484211 converged Fitting Repeat 1 # weights: 305 initial value 96.372811 final value 94.484211 converged Fitting Repeat 2 # weights: 305 initial value 111.911152 final value 94.484211 converged Fitting Repeat 3 # weights: 305 initial value 109.083082 iter 10 value 93.490971 final value 93.490686 converged Fitting Repeat 4 # weights: 305 initial value 110.015504 iter 10 value 92.303922 iter 20 value 92.300971 final value 92.149580 converged Fitting Repeat 5 # weights: 305 initial value 99.167455 final value 94.484211 converged Fitting Repeat 1 # weights: 507 initial value 96.387091 iter 10 value 93.773011 final value 93.772973 converged Fitting Repeat 2 # weights: 507 initial value 105.999772 final value 94.484211 converged Fitting Repeat 3 # weights: 507 initial value 96.856388 iter 10 value 93.773113 final value 93.772973 converged Fitting Repeat 4 # weights: 507 initial value 105.077543 iter 10 value 93.722181 final value 93.720301 converged Fitting Repeat 5 # weights: 507 initial value 119.466080 iter 10 value 93.551526 final value 93.551515 converged Fitting Repeat 1 # weights: 103 initial value 96.708685 iter 10 value 94.495558 iter 20 value 85.924686 iter 30 value 82.962748 iter 40 value 82.251092 iter 50 value 82.224290 iter 60 value 82.159411 iter 70 value 82.139214 iter 70 value 82.139214 iter 70 value 82.139214 final value 82.139214 converged Fitting Repeat 2 # weights: 103 initial value 112.825846 iter 10 value 94.488307 iter 20 value 94.486678 iter 30 value 92.582675 iter 40 value 85.984461 iter 50 value 84.692860 iter 60 value 83.204869 iter 70 value 82.340267 iter 80 value 81.847252 iter 90 value 81.833730 final value 81.833726 converged Fitting Repeat 3 # weights: 103 initial value 104.886055 iter 10 value 93.663277 iter 20 value 89.993595 iter 30 value 84.756538 iter 40 value 84.458859 iter 50 value 83.299441 iter 60 value 83.246856 iter 70 value 83.235437 iter 80 value 83.178407 iter 90 value 79.866716 iter 100 value 78.530147 final value 78.530147 stopped after 100 iterations Fitting Repeat 4 # weights: 103 initial value 101.781249 iter 10 value 94.440862 iter 20 value 93.753389 iter 30 value 92.817435 iter 40 value 87.049594 iter 50 value 86.234257 iter 60 value 85.731619 iter 70 value 83.325761 iter 80 value 82.612681 iter 90 value 81.994989 iter 100 value 81.851723 final value 81.851723 stopped after 100 iterations Fitting Repeat 5 # weights: 103 initial value 98.661126 iter 10 value 94.197561 iter 20 value 90.152425 iter 30 value 89.581995 iter 40 value 89.524096 iter 50 value 89.504544 iter 60 value 89.503384 final value 89.503219 converged Fitting Repeat 1 # weights: 305 initial value 101.416181 iter 10 value 94.162681 iter 20 value 93.783425 iter 30 value 93.698912 iter 40 value 93.458269 iter 50 value 92.112487 iter 60 value 88.469591 iter 70 value 85.792368 iter 80 value 85.070007 iter 90 value 82.725758 iter 100 value 82.145355 final value 82.145355 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 105.282992 iter 10 value 94.173307 iter 20 value 93.896402 iter 30 value 87.493270 iter 40 value 85.575952 iter 50 value 85.199056 iter 60 value 84.524185 iter 70 value 83.884100 iter 80 value 82.587183 iter 90 value 81.454309 iter 100 value 81.184108 final value 81.184108 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 99.871902 iter 10 value 94.171731 iter 20 value 93.285195 iter 30 value 87.357487 iter 40 value 87.098384 iter 50 value 81.814673 iter 60 value 80.329646 iter 70 value 80.144865 iter 80 value 79.586868 iter 90 value 79.304167 iter 100 value 78.438766 final value 78.438766 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 100.132539 iter 10 value 94.480707 iter 20 value 84.088481 iter 30 value 83.821215 iter 40 value 82.402552 iter 50 value 82.047272 iter 60 value 81.871500 iter 70 value 81.601802 iter 80 value 81.218806 iter 90 value 78.880415 iter 100 value 78.295644 final value 78.295644 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 109.125208 iter 10 value 94.376917 iter 20 value 83.974098 iter 30 value 80.960449 iter 40 value 79.939357 iter 50 value 79.362851 iter 60 value 79.140930 iter 70 value 79.109261 iter 80 value 79.086236 iter 90 value 78.988384 iter 100 value 78.912633 final value 78.912633 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 116.808682 iter 10 value 96.136628 iter 20 value 95.204679 iter 30 value 94.598544 iter 40 value 87.041145 iter 50 value 84.993883 iter 60 value 83.789300 iter 70 value 82.142093 iter 80 value 80.489461 iter 90 value 78.023394 iter 100 value 77.792535 final value 77.792535 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 105.708853 iter 10 value 99.095144 iter 20 value 88.926972 iter 30 value 86.463060 iter 40 value 82.028950 iter 50 value 79.950828 iter 60 value 79.078896 iter 70 value 78.908738 iter 80 value 78.752718 iter 90 value 78.473478 iter 100 value 78.306098 final value 78.306098 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 108.073733 iter 10 value 94.574582 iter 20 value 92.833103 iter 30 value 89.460491 iter 40 value 82.214688 iter 50 value 80.197606 iter 60 value 79.705392 iter 70 value 79.180427 iter 80 value 79.079849 iter 90 value 78.898222 iter 100 value 78.644339 final value 78.644339 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 119.370518 iter 10 value 94.487142 iter 20 value 82.830263 iter 30 value 81.969529 iter 40 value 80.630181 iter 50 value 79.286445 iter 60 value 78.569337 iter 70 value 77.879002 iter 80 value 77.649324 iter 90 value 77.481876 iter 100 value 77.432102 final value 77.432102 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 106.238762 iter 10 value 94.492052 iter 20 value 90.785468 iter 30 value 83.638729 iter 40 value 82.956414 iter 50 value 82.272167 iter 60 value 79.330218 iter 70 value 79.190003 iter 80 value 79.122466 iter 90 value 79.082087 iter 100 value 79.025394 final value 79.025394 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 109.003299 final value 94.485671 converged Fitting Repeat 2 # weights: 103 initial value 98.881332 final value 94.485668 converged Fitting Repeat 3 # weights: 103 initial value 102.946554 final value 94.485826 converged Fitting Repeat 4 # weights: 103 initial value 98.575917 final value 94.485693 converged Fitting Repeat 5 # weights: 103 initial value 104.710254 iter 10 value 93.775069 iter 20 value 93.774826 iter 30 value 93.745220 iter 40 value 91.651406 iter 50 value 83.885842 iter 60 value 82.159228 iter 70 value 82.001024 iter 80 value 81.930308 iter 90 value 81.929399 iter 100 value 81.928699 final value 81.928699 stopped after 100 iterations Fitting Repeat 1 # weights: 305 initial value 111.359350 iter 10 value 80.601417 iter 20 value 79.845937 iter 30 value 79.843691 iter 40 value 79.608899 iter 50 value 79.557555 final value 79.557483 converged Fitting Repeat 2 # weights: 305 initial value 100.129374 iter 10 value 93.778581 iter 20 value 93.764198 iter 30 value 93.490392 iter 40 value 93.461217 iter 50 value 81.542655 iter 60 value 78.721336 iter 70 value 77.655610 iter 80 value 77.518920 iter 90 value 77.393957 iter 100 value 77.305545 final value 77.305545 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 99.840429 iter 10 value 93.765085 iter 20 value 93.725576 iter 30 value 93.721332 final value 93.720740 converged Fitting Repeat 4 # weights: 305 initial value 109.162651 iter 10 value 94.488407 iter 20 value 94.484223 iter 30 value 92.815954 iter 40 value 85.902916 iter 50 value 85.616210 iter 60 value 85.560163 iter 70 value 83.120409 iter 80 value 82.966660 iter 90 value 82.833638 iter 100 value 81.708576 final value 81.708576 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 96.269402 iter 10 value 94.487947 iter 20 value 92.051480 iter 30 value 87.297554 iter 40 value 87.166469 iter 50 value 87.166120 iter 60 value 85.556098 iter 70 value 85.534985 iter 80 value 83.123966 iter 90 value 82.814092 iter 100 value 82.812500 final value 82.812500 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 103.337841 iter 10 value 94.493642 iter 20 value 94.484933 iter 30 value 94.067471 iter 40 value 87.170782 iter 50 value 86.863908 iter 60 value 86.858906 iter 70 value 85.538465 iter 80 value 83.270653 iter 90 value 82.697123 final value 82.690114 converged Fitting Repeat 2 # weights: 507 initial value 101.691433 iter 10 value 93.783734 iter 20 value 93.778505 iter 30 value 93.543757 iter 40 value 93.543309 final value 93.542805 converged Fitting Repeat 3 # weights: 507 initial value 101.702684 iter 10 value 93.782272 iter 20 value 93.774853 iter 30 value 82.824014 iter 40 value 80.884321 iter 50 value 80.615401 iter 60 value 80.608749 final value 80.608714 converged Fitting Repeat 4 # weights: 507 initial value 107.818044 iter 10 value 93.728639 iter 20 value 93.721869 iter 30 value 93.634540 iter 40 value 89.850266 iter 50 value 84.290842 iter 60 value 79.712040 iter 70 value 79.150523 iter 80 value 78.387946 iter 90 value 77.740276 iter 100 value 77.739575 final value 77.739575 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 125.767840 iter 10 value 91.985858 iter 20 value 91.973455 iter 30 value 91.888241 iter 40 value 91.886282 iter 50 value 91.885375 iter 60 value 90.408593 iter 70 value 90.183607 iter 80 value 90.175553 iter 90 value 90.158024 iter 100 value 90.155365 final value 90.155365 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 134.497310 iter 10 value 117.899218 iter 20 value 117.881193 iter 30 value 105.571469 final value 104.908393 converged Fitting Repeat 2 # weights: 507 initial value 122.947398 iter 10 value 117.676975 iter 20 value 117.674787 iter 30 value 117.460683 iter 40 value 116.926354 iter 50 value 116.713751 iter 60 value 116.712484 iter 70 value 116.712370 final value 116.712352 converged Fitting Repeat 3 # weights: 507 initial value 133.182315 iter 10 value 117.775666 iter 20 value 117.634431 iter 30 value 117.554038 iter 40 value 117.532349 final value 117.528375 converged Fitting Repeat 4 # weights: 507 initial value 120.184356 iter 10 value 117.778544 iter 20 value 117.760919 final value 117.728652 converged Fitting Repeat 5 # weights: 507 initial value 121.763866 iter 10 value 117.893625 iter 20 value 117.571837 iter 30 value 114.381257 iter 40 value 104.337840 iter 50 value 104.265842 iter 60 value 103.058689 iter 70 value 102.043389 iter 80 value 102.026494 iter 90 value 102.015131 iter 100 value 102.006781 final value 102.006781 stopped after 100 iterations svmRadial ranger Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases RUNIT TEST PROTOCOL -- Mon Jul 22 01:22:33 2024 *********************************************** Number of test functions: 7 Number of errors: 0 Number of failures: 0 1 Test Suite : HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures Number of test functions: 7 Number of errors: 0 Number of failures: 0 Warning messages: 1: `repeats` has no meaning for this resampling method. 2: executing %dopar% sequentially: no parallel backend registered > > > > > proc.time() user system elapsed 41.686 2.087 42.671
HPiP.Rcheck/HPiP-Ex.timings
name | user | system | elapsed | |
FSmethod | 33.984 | 0.666 | 34.652 | |
FreqInteractors | 0.218 | 0.020 | 0.238 | |
calculateAAC | 0.036 | 0.008 | 0.044 | |
calculateAutocor | 0.291 | 0.021 | 0.311 | |
calculateCTDC | 0.077 | 0.000 | 0.076 | |
calculateCTDD | 0.562 | 0.000 | 0.561 | |
calculateCTDT | 0.232 | 0.000 | 0.232 | |
calculateCTriad | 0.651 | 0.012 | 0.663 | |
calculateDC | 0.084 | 0.004 | 0.088 | |
calculateF | 0.292 | 0.008 | 0.299 | |
calculateKSAAP | 0.085 | 0.008 | 0.093 | |
calculateQD_Sm | 1.863 | 0.056 | 1.919 | |
calculateTC | 1.396 | 0.172 | 1.568 | |
calculateTC_Sm | 0.286 | 0.004 | 0.290 | |
corr_plot | 34.447 | 0.460 | 34.972 | |
enrichfindP | 0.455 | 0.035 | 8.728 | |
enrichfind_hp | 0.061 | 0.005 | 1.423 | |
enrichplot | 0.371 | 0.016 | 0.387 | |
filter_missing_values | 0.001 | 0.000 | 0.002 | |
getFASTA | 0.465 | 0.004 | 3.841 | |
getHPI | 0.001 | 0.000 | 0.001 | |
get_negativePPI | 0.002 | 0.000 | 0.002 | |
get_positivePPI | 0 | 0 | 0 | |
impute_missing_data | 0.002 | 0.000 | 0.002 | |
plotPPI | 0.075 | 0.000 | 0.075 | |
pred_ensembel | 13.480 | 0.711 | 10.906 | |
var_imp | 35.944 | 1.104 | 37.089 | |