Back to Multiple platform build/check report for BioC 3.19: simplified long |
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This page was generated on 2024-05-22 11:35:45 -0400 (Wed, 22 May 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4751 |
palomino3 | Windows Server 2022 Datacenter | x64 | 4.4.0 (2024-04-24 ucrt) -- "Puppy Cup" | 4485 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 3444 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 987/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
HPiP 1.10.0 (landing page) Matineh Rahmatbakhsh
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | ERROR | skipped | skipped | |||||||||
kjohnson3 | macOS 13.6.5 Ventura / arm64 | see weekly results here | ||||||||||||
To the developers/maintainers of the HPiP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: HPiP |
Version: 1.10.0 |
Command: F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:HPiP.install-out.txt --library=F:\biocbuild\bbs-3.19-bioc\R\library --no-vignettes --timings HPiP_1.10.0.tar.gz |
StartedAt: 2024-05-22 02:55:27 -0400 (Wed, 22 May 2024) |
EndedAt: 2024-05-22 03:00:16 -0400 (Wed, 22 May 2024) |
EllapsedTime: 289.5 seconds |
RetCode: 0 |
Status: OK |
CheckDir: HPiP.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:HPiP.install-out.txt --library=F:\biocbuild\bbs-3.19-bioc\R\library --no-vignettes --timings HPiP_1.10.0.tar.gz ### ############################################################################## ############################################################################## * using log directory 'F:/biocbuild/bbs-3.19-bioc/meat/HPiP.Rcheck' * using R version 4.4.0 (2024-04-24 ucrt) * using platform: x86_64-w64-mingw32 * R was compiled by gcc.exe (GCC) 13.2.0 GNU Fortran (GCC) 13.2.0 * running under: Windows Server 2022 x64 (build 20348) * using session charset: UTF-8 * using option '--no-vignettes' * checking for file 'HPiP/DESCRIPTION' ... OK * checking extension type ... Package * this is package 'HPiP' version '1.10.0' * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking whether package 'HPiP' can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking 'build' directory ... OK * checking DESCRIPTION meta-information ... NOTE License stub is invalid DCF. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE checkRd: (-1) getHPI.Rd:29: Lost braces 29 | then the Kronecker product is the code{(pm × qn)} block matrix | ^ * checking Rd metadata ... OK * checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: 'ftrCOOL' * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of 'data' directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking R/sysdata.rda ... OK * checking files in 'vignettes' ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed FSmethod 31.82 2.27 34.20 var_imp 32.08 1.18 33.27 corr_plot 30.98 2.05 33.04 pred_ensembel 13.74 0.50 10.33 enrichfindP 0.55 0.16 13.72 * checking for unstated dependencies in 'tests' ... OK * checking tests ... Running 'runTests.R' OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 3 NOTEs See 'F:/biocbuild/bbs-3.19-bioc/meat/HPiP.Rcheck/00check.log' for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.19-bioc/R/library' * installing *source* package 'HPiP' ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R version 4.4.0 (2024-04-24 ucrt) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: x86_64-w64-mingw32/x64 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > BiocGenerics:::testPackage('HPiP') No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE avNNet Loading required package: ggplot2 Loading required package: lattice Fitting Repeat 1 # weights: 103 initial value 95.688798 final value 94.052910 converged Fitting Repeat 2 # weights: 103 initial value 99.360170 final value 94.052910 converged Fitting Repeat 3 # weights: 103 initial value 97.135167 final value 94.052910 converged Fitting Repeat 4 # weights: 103 initial value 97.507399 final value 94.052910 converged Fitting Repeat 5 # weights: 103 initial value 95.987676 iter 10 value 91.494794 iter 20 value 86.471631 iter 20 value 86.471631 iter 20 value 86.471631 final value 86.471631 converged Fitting Repeat 1 # weights: 305 initial value 97.762304 iter 10 value 94.047425 final value 94.043243 converged Fitting Repeat 2 # weights: 305 initial value 100.796684 final value 94.052910 converged Fitting Repeat 3 # weights: 305 initial value 105.853766 final value 94.052910 converged Fitting Repeat 4 # weights: 305 initial value 103.947335 final value 94.052910 converged Fitting Repeat 5 # weights: 305 initial value 98.225169 final value 94.052910 converged Fitting Repeat 1 # weights: 507 initial value 95.625532 final value 94.052910 converged Fitting Repeat 2 # weights: 507 initial value 101.255039 iter 10 value 91.901272 iter 20 value 88.399081 iter 30 value 86.850589 iter 40 value 86.469265 iter 50 value 86.186804 iter 60 value 86.185196 final value 86.183675 converged Fitting Repeat 3 # weights: 507 initial value 105.612094 final value 94.043243 converged Fitting Repeat 4 # weights: 507 initial value 94.663947 final value 94.052910 converged Fitting Repeat 5 # weights: 507 initial value 99.474885 final value 94.052910 converged Fitting Repeat 1 # weights: 103 initial value 116.738948 iter 10 value 93.683733 iter 20 value 92.985552 iter 30 value 91.944474 iter 40 value 91.889017 iter 50 value 90.512752 iter 60 value 89.589565 iter 70 value 89.561562 iter 80 value 89.555442 final value 89.554045 converged Fitting Repeat 2 # weights: 103 initial value 101.127748 iter 10 value 93.985356 iter 20 value 90.800578 iter 30 value 89.337475 iter 40 value 88.944742 iter 50 value 82.892965 iter 60 value 81.705106 iter 70 value 81.336098 iter 80 value 81.108742 iter 90 value 81.029923 iter 100 value 80.250124 final value 80.250124 stopped after 100 iterations Fitting Repeat 3 # weights: 103 initial value 99.634688 iter 10 value 94.030269 iter 20 value 90.479648 iter 30 value 88.798715 iter 40 value 88.493145 iter 50 value 88.487676 final value 88.487671 converged Fitting Repeat 4 # weights: 103 initial value 109.764931 iter 10 value 94.079564 iter 20 value 94.016164 iter 30 value 89.971997 iter 40 value 87.262304 iter 50 value 86.144382 iter 60 value 85.137405 iter 70 value 84.796382 iter 80 value 84.782330 iter 90 value 84.776353 final value 84.776283 converged Fitting Repeat 5 # weights: 103 initial value 98.235911 iter 10 value 94.027136 iter 20 value 93.712076 iter 30 value 93.640206 iter 40 value 93.559661 iter 50 value 93.461580 iter 60 value 89.493560 iter 70 value 86.642173 iter 80 value 85.426482 iter 90 value 84.889043 iter 100 value 84.008397 final value 84.008397 stopped after 100 iterations Fitting Repeat 1 # weights: 305 initial value 108.595129 iter 10 value 94.044268 iter 20 value 91.139372 iter 30 value 88.607341 iter 40 value 87.112248 iter 50 value 86.649377 iter 60 value 85.124144 iter 70 value 84.701765 iter 80 value 82.731072 iter 90 value 81.103682 iter 100 value 80.632753 final value 80.632753 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 100.761727 iter 10 value 94.051672 iter 20 value 93.487331 iter 30 value 90.452317 iter 40 value 85.876314 iter 50 value 83.460036 iter 60 value 83.078324 iter 70 value 82.444061 iter 80 value 82.011762 iter 90 value 81.653361 iter 100 value 81.267625 final value 81.267625 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 110.605593 iter 10 value 93.735616 iter 20 value 93.320367 iter 30 value 87.493096 iter 40 value 86.334451 iter 50 value 81.818998 iter 60 value 80.973676 iter 70 value 80.158159 iter 80 value 79.884839 iter 90 value 79.715567 iter 100 value 79.621076 final value 79.621076 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 101.366381 iter 10 value 93.471856 iter 20 value 87.681601 iter 30 value 84.929847 iter 40 value 84.385569 iter 50 value 83.780124 iter 60 value 81.523247 iter 70 value 81.033869 iter 80 value 80.662225 iter 90 value 79.999135 iter 100 value 79.446018 final value 79.446018 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 101.194306 iter 10 value 93.910954 iter 20 value 90.496717 iter 30 value 86.576608 iter 40 value 86.191662 iter 50 value 86.009108 iter 60 value 85.614619 iter 70 value 85.265079 iter 80 value 84.082627 iter 90 value 81.846261 iter 100 value 81.566548 final value 81.566548 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 114.267497 iter 10 value 96.832994 iter 20 value 87.397720 iter 30 value 84.820559 iter 40 value 84.287091 iter 50 value 83.005228 iter 60 value 82.261243 iter 70 value 81.591333 iter 80 value 81.529977 iter 90 value 81.379855 iter 100 value 81.061233 final value 81.061233 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 103.372072 iter 10 value 96.557468 iter 20 value 84.660982 iter 30 value 81.809796 iter 40 value 81.085447 iter 50 value 80.637482 iter 60 value 80.311640 iter 70 value 80.174197 iter 80 value 79.999025 iter 90 value 79.392146 iter 100 value 78.799662 final value 78.799662 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 105.320814 iter 10 value 93.931558 iter 20 value 89.638757 iter 30 value 89.326951 iter 40 value 87.303628 iter 50 value 84.991390 iter 60 value 84.313464 iter 70 value 81.698859 iter 80 value 80.931342 iter 90 value 80.334653 iter 100 value 80.069479 final value 80.069479 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 130.159021 iter 10 value 94.221505 iter 20 value 91.960483 iter 30 value 89.640759 iter 40 value 89.508807 iter 50 value 89.104516 iter 60 value 88.695800 iter 70 value 88.329208 iter 80 value 88.237270 iter 90 value 88.129883 iter 100 value 87.282594 final value 87.282594 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 106.033733 iter 10 value 93.622820 iter 20 value 88.800278 iter 30 value 86.209717 iter 40 value 85.684411 iter 50 value 85.154118 iter 60 value 84.953251 iter 70 value 83.247847 iter 80 value 80.307302 iter 90 value 79.324355 iter 100 value 79.139769 final value 79.139769 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 98.406661 iter 10 value 94.054514 iter 20 value 94.051793 iter 30 value 93.125418 iter 40 value 93.069177 final value 93.069157 converged Fitting Repeat 2 # weights: 103 initial value 102.621133 final value 94.054634 converged Fitting Repeat 3 # weights: 103 initial value 103.614611 iter 10 value 93.986796 iter 20 value 93.184538 iter 30 value 93.095289 iter 40 value 92.830985 iter 50 value 90.888361 iter 60 value 86.467782 final value 86.463414 converged Fitting Repeat 4 # weights: 103 initial value 94.409592 iter 10 value 93.466291 iter 20 value 93.441519 iter 30 value 90.108206 iter 40 value 89.611457 iter 50 value 89.567921 iter 60 value 89.561539 iter 70 value 89.560854 iter 80 value 89.560554 iter 90 value 89.560019 iter 100 value 89.536664 final value 89.536664 stopped after 100 iterations Fitting Repeat 5 # weights: 103 initial value 98.307456 iter 10 value 91.837673 iter 20 value 91.754429 final value 91.753902 converged Fitting Repeat 1 # weights: 305 initial value 116.206447 iter 10 value 94.057913 iter 20 value 93.989473 iter 30 value 93.601592 iter 30 value 93.601592 iter 30 value 93.601592 final value 93.601592 converged Fitting Repeat 2 # weights: 305 initial value 94.978078 iter 10 value 94.057509 iter 20 value 93.937791 final value 93.465526 converged Fitting Repeat 3 # weights: 305 initial value 94.962218 iter 10 value 94.057885 iter 20 value 91.012769 iter 30 value 85.878533 iter 40 value 81.548006 iter 50 value 80.887510 iter 60 value 80.884942 iter 70 value 80.884611 iter 80 value 80.076699 iter 90 value 79.845462 iter 100 value 79.844685 final value 79.844685 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 108.814360 iter 10 value 94.064391 iter 20 value 93.561969 iter 30 value 90.399113 iter 40 value 87.528659 iter 50 value 86.648271 iter 60 value 86.646744 iter 70 value 84.790547 iter 80 value 84.788881 iter 90 value 84.783383 iter 100 value 84.763954 final value 84.763954 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 111.964674 iter 10 value 94.058145 iter 20 value 93.537568 iter 30 value 86.424062 iter 40 value 86.155768 iter 50 value 86.151991 iter 60 value 86.150917 iter 70 value 85.945982 iter 80 value 85.889332 iter 90 value 85.878715 final value 85.878591 converged Fitting Repeat 1 # weights: 507 initial value 121.488692 iter 10 value 89.631447 iter 20 value 87.847367 iter 30 value 87.838721 iter 40 value 87.835977 iter 50 value 84.215733 iter 60 value 83.981868 iter 70 value 83.865278 iter 80 value 82.525120 iter 90 value 81.820698 iter 100 value 81.816811 final value 81.816811 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 98.552642 iter 10 value 93.667142 iter 20 value 90.561367 iter 30 value 90.253975 iter 40 value 88.517054 iter 50 value 87.875938 iter 60 value 87.872411 iter 70 value 87.853651 iter 70 value 87.853651 iter 80 value 87.851383 iter 90 value 87.848820 final value 87.847692 converged Fitting Repeat 3 # weights: 507 initial value 102.909016 iter 10 value 94.055164 iter 20 value 94.049711 final value 93.602057 converged Fitting Repeat 4 # weights: 507 initial value 95.934241 iter 10 value 94.054528 iter 20 value 91.088946 iter 30 value 90.621303 iter 40 value 90.619306 iter 50 value 89.435530 iter 60 value 88.621424 iter 70 value 81.407155 iter 80 value 81.165064 iter 90 value 80.908682 iter 100 value 80.681365 final value 80.681365 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 96.946307 iter 10 value 85.371169 iter 20 value 84.983801 iter 30 value 84.918258 iter 40 value 84.916326 iter 50 value 84.467863 iter 60 value 84.466131 iter 70 value 83.914016 iter 80 value 83.686185 iter 90 value 83.684210 iter 100 value 83.681729 final value 83.681729 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 103.767713 final value 94.484211 converged Fitting Repeat 2 # weights: 103 initial value 95.130347 final value 94.484211 converged Fitting Repeat 3 # weights: 103 initial value 99.865312 final value 94.484211 converged Fitting Repeat 4 # weights: 103 initial value 113.904288 final value 94.484211 converged Fitting Repeat 5 # weights: 103 initial value 102.913782 final value 94.484211 converged Fitting Repeat 1 # weights: 305 initial value 112.475076 final value 94.484211 converged Fitting Repeat 2 # weights: 305 initial value 97.644199 final value 94.105263 converged Fitting Repeat 3 # weights: 305 initial value 97.504508 final value 94.484211 converged Fitting Repeat 4 # weights: 305 initial value 125.258140 final value 94.484211 converged Fitting Repeat 5 # weights: 305 initial value 113.495768 iter 10 value 94.216962 iter 20 value 87.031775 iter 30 value 86.580427 final value 86.580087 converged Fitting Repeat 1 # weights: 507 initial value 109.342511 final value 94.142589 converged Fitting Repeat 2 # weights: 507 initial value 106.005272 iter 10 value 93.724465 final value 93.708658 converged Fitting Repeat 3 # weights: 507 initial value 96.703134 iter 10 value 94.026566 final value 94.026542 converged Fitting Repeat 4 # weights: 507 initial value 103.281772 final value 94.484211 converged Fitting Repeat 5 # weights: 507 initial value 123.115694 final value 94.484211 converged Fitting Repeat 1 # weights: 103 initial value 116.210609 iter 10 value 94.417323 iter 20 value 93.443496 iter 30 value 86.477587 iter 40 value 85.924213 iter 50 value 84.011647 iter 60 value 81.170495 iter 70 value 80.532356 iter 80 value 80.272028 iter 90 value 80.084306 final value 80.081497 converged Fitting Repeat 2 # weights: 103 initial value 99.798790 iter 10 value 94.595467 iter 20 value 94.483707 iter 30 value 94.156680 iter 40 value 94.125959 iter 50 value 93.889635 iter 60 value 89.619952 iter 70 value 85.472774 iter 80 value 83.647658 iter 90 value 83.504315 iter 100 value 82.631473 final value 82.631473 stopped after 100 iterations Fitting Repeat 3 # weights: 103 initial value 106.152364 iter 10 value 94.373886 iter 20 value 93.890146 iter 30 value 92.530136 iter 40 value 85.728049 iter 50 value 85.431770 iter 60 value 85.063120 iter 70 value 84.108870 iter 80 value 83.125965 iter 90 value 82.907338 iter 100 value 82.883306 final value 82.883306 stopped after 100 iterations Fitting Repeat 4 # weights: 103 initial value 104.834827 iter 10 value 94.384970 iter 20 value 92.827622 iter 30 value 92.544945 iter 40 value 92.440677 iter 50 value 86.961075 iter 60 value 81.158505 iter 70 value 80.909393 iter 80 value 80.218127 iter 90 value 80.204381 iter 100 value 80.190351 final value 80.190351 stopped after 100 iterations Fitting Repeat 5 # weights: 103 initial value 97.896606 iter 10 value 93.895824 iter 20 value 93.817273 iter 30 value 92.208414 iter 40 value 89.011473 iter 50 value 87.030774 iter 60 value 84.698032 iter 70 value 84.609511 iter 80 value 84.476690 iter 90 value 82.985220 iter 100 value 82.883287 final value 82.883287 stopped after 100 iterations Fitting Repeat 1 # weights: 305 initial value 122.490809 iter 10 value 93.064906 iter 20 value 85.905438 iter 30 value 85.309073 iter 40 value 81.800571 iter 50 value 80.733171 iter 60 value 80.564448 iter 70 value 80.540753 iter 80 value 80.499681 iter 90 value 80.436713 iter 100 value 80.080428 final value 80.080428 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 120.886107 iter 10 value 93.564426 iter 20 value 86.069776 iter 30 value 84.992288 iter 40 value 83.330815 iter 50 value 82.611300 iter 60 value 82.431436 iter 70 value 82.291220 iter 80 value 82.155389 iter 90 value 81.104179 iter 100 value 80.124016 final value 80.124016 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 112.005903 iter 10 value 94.457651 iter 20 value 91.750213 iter 30 value 91.251740 iter 40 value 91.226262 iter 50 value 88.593763 iter 60 value 83.185081 iter 70 value 82.209826 iter 80 value 81.733532 iter 90 value 80.573338 iter 100 value 80.188791 final value 80.188791 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 100.006763 iter 10 value 94.620061 iter 20 value 94.138164 iter 30 value 93.952087 iter 40 value 86.083281 iter 50 value 83.357222 iter 60 value 81.347261 iter 70 value 80.145481 iter 80 value 79.811267 iter 90 value 79.647883 iter 100 value 79.534195 final value 79.534195 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 101.212659 iter 10 value 94.721552 iter 20 value 93.818499 iter 30 value 93.801922 iter 40 value 87.233736 iter 50 value 84.408839 iter 60 value 81.548107 iter 70 value 80.872475 iter 80 value 79.879378 iter 90 value 79.590918 iter 100 value 79.508483 final value 79.508483 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 131.443423 iter 10 value 94.482311 iter 20 value 92.724287 iter 30 value 92.554361 iter 40 value 90.026930 iter 50 value 82.610168 iter 60 value 81.978772 iter 70 value 80.042762 iter 80 value 79.462631 iter 90 value 78.787913 iter 100 value 78.701321 final value 78.701321 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 109.019542 iter 10 value 93.861590 iter 20 value 89.326060 iter 30 value 86.537000 iter 40 value 84.698915 iter 50 value 83.945966 iter 60 value 82.419367 iter 70 value 82.007939 iter 80 value 80.922568 iter 90 value 80.462535 iter 100 value 80.062466 final value 80.062466 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 106.636132 iter 10 value 95.017065 iter 20 value 87.040423 iter 30 value 84.360745 iter 40 value 81.851870 iter 50 value 80.023503 iter 60 value 78.938199 iter 70 value 78.561548 iter 80 value 78.377841 iter 90 value 78.235088 iter 100 value 78.179704 final value 78.179704 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 105.664431 iter 10 value 93.994424 iter 20 value 88.448920 iter 30 value 83.997713 iter 40 value 83.477078 iter 50 value 82.282280 iter 60 value 81.319174 iter 70 value 80.143730 iter 80 value 78.980302 iter 90 value 78.836089 iter 100 value 78.752401 final value 78.752401 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 106.322867 iter 10 value 94.808781 iter 20 value 83.844817 iter 30 value 82.700166 iter 40 value 82.025977 iter 50 value 80.314937 iter 60 value 79.725990 iter 70 value 79.414935 iter 80 value 79.133098 iter 90 value 79.002995 iter 100 value 78.917674 final value 78.917674 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 108.220092 iter 10 value 94.028254 iter 20 value 94.027203 iter 30 value 92.807982 iter 40 value 81.736385 iter 50 value 81.024046 iter 60 value 81.013874 iter 70 value 80.798920 iter 80 value 80.639755 final value 80.631283 converged Fitting Repeat 2 # weights: 103 initial value 103.905005 final value 94.485895 converged Fitting Repeat 3 # weights: 103 initial value 96.058226 final value 94.485945 converged Fitting Repeat 4 # weights: 103 initial value 103.152602 final value 94.485624 converged Fitting Repeat 5 # weights: 103 initial value 102.951532 final value 94.485903 converged Fitting Repeat 1 # weights: 305 initial value 98.779411 iter 10 value 94.489002 iter 20 value 94.435740 iter 30 value 94.301295 iter 40 value 94.292995 iter 50 value 94.279911 iter 60 value 94.279324 iter 70 value 94.278935 iter 80 value 94.240182 iter 90 value 93.803582 final value 93.796794 converged Fitting Repeat 2 # weights: 305 initial value 105.449937 iter 10 value 94.488960 iter 20 value 94.484261 iter 30 value 94.026633 iter 40 value 92.718425 final value 92.715225 converged Fitting Repeat 3 # weights: 305 initial value 100.449725 iter 10 value 94.488838 iter 20 value 94.253900 iter 30 value 93.852638 iter 40 value 93.849513 final value 93.849502 converged Fitting Repeat 4 # weights: 305 initial value 114.960100 iter 10 value 94.036275 iter 20 value 94.025391 iter 30 value 93.736134 iter 40 value 93.713255 iter 50 value 93.709308 iter 60 value 93.266427 iter 70 value 91.469559 iter 80 value 89.151293 iter 90 value 81.053040 iter 100 value 80.393454 final value 80.393454 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 115.316581 iter 10 value 94.031948 iter 20 value 93.976650 iter 30 value 93.953977 iter 40 value 93.910122 iter 50 value 93.713564 final value 93.708955 converged Fitting Repeat 1 # weights: 507 initial value 109.219724 iter 10 value 85.607580 iter 20 value 81.971856 iter 30 value 81.712106 iter 40 value 81.710116 iter 50 value 81.499338 iter 60 value 79.358947 iter 70 value 79.332770 iter 80 value 79.331077 iter 80 value 79.331077 final value 79.331077 converged Fitting Repeat 2 # weights: 507 initial value 108.177044 iter 10 value 94.495529 iter 20 value 94.443910 iter 30 value 91.658825 iter 40 value 88.925947 iter 50 value 88.906039 iter 60 value 88.900570 iter 70 value 87.587005 iter 80 value 85.743492 iter 90 value 84.450460 iter 100 value 84.380071 final value 84.380071 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 98.367518 iter 10 value 93.751955 iter 20 value 93.730295 iter 30 value 93.713256 iter 40 value 93.694344 iter 50 value 93.093038 iter 60 value 84.098126 iter 70 value 79.647351 iter 80 value 78.631000 iter 90 value 77.955887 iter 100 value 77.700763 final value 77.700763 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 117.555151 iter 10 value 94.007994 iter 20 value 93.962168 iter 30 value 93.954373 iter 40 value 90.127110 iter 50 value 87.673350 iter 60 value 83.674955 iter 70 value 83.256734 iter 80 value 83.009082 iter 90 value 79.485666 iter 100 value 79.071518 final value 79.071518 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 97.762805 iter 10 value 94.492283 iter 20 value 94.193781 iter 30 value 93.711919 final value 93.709490 converged Fitting Repeat 1 # weights: 103 initial value 94.542048 final value 94.484211 converged Fitting Repeat 2 # weights: 103 initial value 99.355485 final value 94.484211 converged Fitting Repeat 3 # weights: 103 initial value 94.863167 final value 94.484211 converged Fitting Repeat 4 # weights: 103 initial value 96.204398 final value 94.484211 converged Fitting Repeat 5 # weights: 103 initial value 101.834858 final value 94.449438 converged Fitting Repeat 1 # weights: 305 initial value 110.682023 final value 94.484211 converged Fitting Repeat 2 # weights: 305 initial value 94.693505 final value 94.312038 converged Fitting Repeat 3 # weights: 305 initial value 105.281897 iter 10 value 94.357495 final value 94.354396 converged Fitting Repeat 4 # weights: 305 initial value 108.370219 final value 94.354396 converged Fitting Repeat 5 # weights: 305 initial value 96.293018 final value 94.484211 converged Fitting Repeat 1 # weights: 507 initial value 112.466243 iter 10 value 87.590374 iter 20 value 86.630465 iter 30 value 84.914851 final value 84.914835 converged Fitting Repeat 2 # weights: 507 initial value 117.652013 iter 10 value 94.356193 final value 94.354396 converged Fitting Repeat 3 # weights: 507 initial value 95.846604 iter 10 value 91.465516 iter 20 value 83.552092 iter 30 value 83.310570 iter 40 value 82.908375 final value 82.814574 converged Fitting Repeat 4 # weights: 507 initial value 100.998846 iter 10 value 86.698071 iter 20 value 86.622127 iter 20 value 86.622126 iter 20 value 86.622126 final value 86.622126 converged Fitting Repeat 5 # weights: 507 initial value 96.603392 iter 10 value 94.487801 final value 94.476471 converged Fitting Repeat 1 # weights: 103 initial value 99.411280 iter 10 value 94.488645 iter 20 value 88.471871 iter 30 value 86.560577 iter 40 value 86.143242 iter 50 value 85.614339 iter 60 value 80.877798 iter 70 value 80.427177 iter 80 value 80.314806 iter 90 value 80.174671 iter 100 value 80.154339 final value 80.154339 stopped after 100 iterations Fitting Repeat 2 # weights: 103 initial value 99.952471 iter 10 value 93.235219 iter 20 value 83.460800 iter 30 value 82.601832 iter 40 value 82.351230 iter 50 value 82.271635 iter 60 value 81.750790 iter 70 value 81.531617 iter 80 value 81.428714 final value 81.428535 converged Fitting Repeat 3 # weights: 103 initial value 103.883684 iter 10 value 94.490660 iter 20 value 94.439999 iter 30 value 91.292026 iter 40 value 90.349899 iter 50 value 90.056552 iter 60 value 88.563915 iter 70 value 85.598628 iter 80 value 84.917675 iter 90 value 82.743238 iter 100 value 82.228711 final value 82.228711 stopped after 100 iterations Fitting Repeat 4 # weights: 103 initial value 105.760694 iter 10 value 94.486445 iter 20 value 90.656374 iter 30 value 88.509164 iter 40 value 85.351046 iter 50 value 84.964016 iter 60 value 84.452314 iter 70 value 81.742568 iter 80 value 80.772283 iter 90 value 80.404752 iter 100 value 80.179262 final value 80.179262 stopped after 100 iterations Fitting Repeat 5 # weights: 103 initial value 98.966176 iter 10 value 94.380660 iter 20 value 94.349069 iter 30 value 85.203493 iter 40 value 84.597057 iter 50 value 84.401558 iter 60 value 83.836037 iter 70 value 83.393524 iter 80 value 83.299828 iter 90 value 83.293062 final value 83.291947 converged Fitting Repeat 1 # weights: 305 initial value 102.271565 iter 10 value 93.831532 iter 20 value 90.326058 iter 30 value 89.955407 iter 40 value 85.223527 iter 50 value 80.733977 iter 60 value 79.152525 iter 70 value 78.964410 iter 80 value 78.737898 iter 90 value 78.652116 iter 100 value 78.643917 final value 78.643917 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 102.751746 iter 10 value 94.593654 iter 20 value 93.631729 iter 30 value 86.557093 iter 40 value 84.619408 iter 50 value 81.994402 iter 60 value 81.259129 iter 70 value 80.728654 iter 80 value 79.272071 iter 90 value 79.041811 iter 100 value 78.914316 final value 78.914316 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 121.943671 iter 10 value 94.347143 iter 20 value 87.512254 iter 30 value 86.137061 iter 40 value 84.736247 iter 50 value 84.146633 iter 60 value 83.513981 iter 70 value 81.781582 iter 80 value 80.215233 iter 90 value 79.531071 iter 100 value 79.230336 final value 79.230336 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 101.833933 iter 10 value 94.362494 iter 20 value 90.415978 iter 30 value 86.248519 iter 40 value 84.055708 iter 50 value 83.699982 iter 60 value 83.419751 iter 70 value 83.309296 iter 80 value 83.133065 iter 90 value 82.139859 iter 100 value 81.469996 final value 81.469996 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 104.669904 iter 10 value 93.145371 iter 20 value 87.752707 iter 30 value 85.851192 iter 40 value 82.171828 iter 50 value 81.088329 iter 60 value 80.316444 iter 70 value 79.282787 iter 80 value 78.390114 iter 90 value 78.097636 iter 100 value 78.055197 final value 78.055197 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 116.704256 iter 10 value 93.423275 iter 20 value 87.621173 iter 30 value 85.234505 iter 40 value 83.502155 iter 50 value 80.690649 iter 60 value 80.127953 iter 70 value 78.950387 iter 80 value 78.580048 iter 90 value 78.502152 iter 100 value 78.322016 final value 78.322016 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 104.654310 iter 10 value 93.425213 iter 20 value 83.580006 iter 30 value 81.768400 iter 40 value 80.745865 iter 50 value 80.436958 iter 60 value 80.189139 iter 70 value 80.040448 iter 80 value 79.720820 iter 90 value 79.216099 iter 100 value 78.964297 final value 78.964297 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 124.861450 iter 10 value 93.952838 iter 20 value 89.455639 iter 30 value 87.880243 iter 40 value 87.591123 iter 50 value 87.008559 iter 60 value 84.431599 iter 70 value 83.931916 iter 80 value 80.000778 iter 90 value 79.116175 iter 100 value 78.777393 final value 78.777393 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 113.090597 iter 10 value 94.603055 iter 20 value 85.881284 iter 30 value 84.301649 iter 40 value 81.987407 iter 50 value 80.015361 iter 60 value 79.438945 iter 70 value 79.352612 iter 80 value 79.036989 iter 90 value 78.531402 iter 100 value 78.449464 final value 78.449464 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 107.264386 iter 10 value 95.719539 iter 20 value 93.613008 iter 30 value 93.039817 iter 40 value 85.638336 iter 50 value 84.626149 iter 60 value 84.279488 iter 70 value 83.744720 iter 80 value 83.400085 iter 90 value 83.371747 iter 100 value 83.344689 final value 83.344689 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 97.441722 final value 94.485771 converged Fitting Repeat 2 # weights: 103 initial value 98.336451 final value 94.486141 converged Fitting Repeat 3 # weights: 103 initial value 104.700644 final value 94.485687 converged Fitting Repeat 4 # weights: 103 initial value 97.714005 final value 94.485823 converged Fitting Repeat 5 # weights: 103 initial value 100.882072 iter 10 value 88.352831 iter 20 value 88.350854 iter 30 value 85.348867 final value 85.231398 converged Fitting Repeat 1 # weights: 305 initial value 106.105876 iter 10 value 94.488486 iter 20 value 94.484325 iter 30 value 91.764764 iter 40 value 87.987355 iter 50 value 87.980091 iter 60 value 87.826767 iter 70 value 84.883412 iter 80 value 84.420327 iter 90 value 84.309065 iter 100 value 84.045012 final value 84.045012 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 99.159753 iter 10 value 94.359162 iter 20 value 94.355128 iter 30 value 94.354463 iter 40 value 93.793690 iter 50 value 82.114484 iter 60 value 81.854875 iter 70 value 81.831672 iter 80 value 81.800600 final value 81.800352 converged Fitting Repeat 3 # weights: 305 initial value 109.951736 iter 10 value 94.496109 iter 20 value 94.380885 iter 30 value 91.869207 iter 40 value 91.868085 iter 50 value 91.867430 iter 60 value 91.867107 iter 70 value 91.847356 iter 80 value 91.827465 iter 90 value 91.826918 iter 100 value 91.826729 final value 91.826729 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 94.503577 iter 10 value 94.248347 iter 20 value 94.238521 iter 30 value 94.238047 iter 40 value 94.237484 iter 50 value 94.236704 iter 60 value 92.925298 iter 70 value 83.569737 iter 80 value 83.208333 iter 90 value 83.195902 iter 100 value 83.193439 final value 83.193439 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 94.085237 iter 10 value 93.210756 iter 20 value 93.207279 iter 30 value 93.027606 iter 40 value 90.159166 iter 50 value 84.143270 iter 60 value 84.023675 iter 70 value 84.023113 iter 80 value 82.692220 iter 90 value 82.611437 iter 100 value 82.501914 final value 82.501914 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 115.895060 iter 10 value 94.362927 iter 20 value 94.355161 final value 94.355137 converged Fitting Repeat 2 # weights: 507 initial value 110.383624 iter 10 value 94.492626 iter 20 value 94.443880 iter 30 value 91.873321 iter 40 value 91.819705 iter 50 value 91.796660 iter 60 value 91.794993 iter 70 value 91.586403 iter 80 value 83.969748 iter 90 value 83.460603 iter 100 value 83.441196 final value 83.441196 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 109.771832 iter 10 value 94.320702 iter 20 value 94.315514 iter 30 value 94.311245 iter 40 value 87.938056 iter 50 value 84.983445 iter 60 value 84.939855 final value 84.939567 converged Fitting Repeat 4 # weights: 507 initial value 96.272796 iter 10 value 94.490320 iter 20 value 90.177029 iter 30 value 84.631514 iter 40 value 84.546295 iter 50 value 84.545477 iter 60 value 84.544185 final value 84.543657 converged Fitting Repeat 5 # weights: 507 initial value 109.180290 iter 10 value 94.492683 iter 20 value 94.484618 iter 30 value 94.359857 iter 40 value 94.008489 iter 50 value 92.103256 iter 60 value 87.345941 iter 70 value 87.168980 iter 80 value 87.021041 iter 90 value 86.618541 iter 100 value 86.548314 final value 86.548314 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 98.371060 final value 94.484211 converged Fitting Repeat 2 # weights: 103 initial value 111.274667 final value 94.484211 converged Fitting Repeat 3 # weights: 103 initial value 102.167651 iter 10 value 93.358251 iter 20 value 84.544606 final value 84.454545 converged Fitting Repeat 4 # weights: 103 initial value 100.444002 final value 94.484211 converged Fitting Repeat 5 # weights: 103 initial value 95.801575 final value 94.484211 converged Fitting Repeat 1 # weights: 305 initial value 107.980650 final value 94.484211 converged Fitting Repeat 2 # weights: 305 initial value 100.055529 final value 94.484211 converged Fitting Repeat 3 # weights: 305 initial value 97.870411 final value 94.484211 converged Fitting Repeat 4 # weights: 305 initial value 102.503051 final value 94.484211 converged Fitting Repeat 5 # weights: 305 initial value 96.504980 final value 94.484211 converged Fitting Repeat 1 # weights: 507 initial value 115.390229 final value 94.484211 converged Fitting Repeat 2 # weights: 507 initial value 102.940441 iter 10 value 94.367369 final value 94.366483 converged Fitting Repeat 3 # weights: 507 initial value 104.700334 final value 94.467391 converged Fitting Repeat 4 # weights: 507 initial value 103.825518 final value 94.484211 converged Fitting Repeat 5 # weights: 507 initial value 120.540728 iter 10 value 94.483463 final value 94.483333 converged Fitting Repeat 1 # weights: 103 initial value 99.188513 iter 10 value 94.413557 iter 20 value 86.958094 iter 30 value 85.617992 iter 40 value 85.341577 iter 50 value 85.270514 final value 85.269172 converged Fitting Repeat 2 # weights: 103 initial value 107.384037 iter 10 value 94.468992 iter 20 value 93.605765 iter 30 value 93.267667 iter 40 value 92.768848 iter 50 value 85.974868 iter 60 value 84.896185 final value 84.891535 converged Fitting Repeat 3 # weights: 103 initial value 102.994261 iter 10 value 94.487883 iter 20 value 94.271418 iter 30 value 90.398643 iter 40 value 89.423465 iter 50 value 87.073479 iter 60 value 85.178518 iter 70 value 84.310938 iter 80 value 83.785465 iter 90 value 83.772155 iter 100 value 83.753365 final value 83.753365 stopped after 100 iterations Fitting Repeat 4 # weights: 103 initial value 99.609784 iter 10 value 94.484730 iter 20 value 88.319683 iter 30 value 85.043535 iter 40 value 84.435215 iter 50 value 83.944677 iter 60 value 83.909078 iter 70 value 83.765205 iter 80 value 83.738542 iter 90 value 83.734415 final value 83.733671 converged Fitting Repeat 5 # weights: 103 initial value 106.353792 iter 10 value 94.472050 iter 20 value 87.638965 iter 30 value 86.475522 iter 40 value 86.214841 iter 50 value 85.585985 iter 60 value 85.270859 iter 70 value 85.269201 final value 85.269171 converged Fitting Repeat 1 # weights: 305 initial value 119.187446 iter 10 value 94.485385 iter 20 value 91.973372 iter 30 value 90.410349 iter 40 value 90.099773 iter 50 value 89.586163 iter 60 value 87.764224 iter 70 value 83.966299 iter 80 value 83.157712 iter 90 value 82.984663 iter 100 value 82.624081 final value 82.624081 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 105.602388 iter 10 value 95.545014 iter 20 value 92.673526 iter 30 value 88.235432 iter 40 value 87.034396 iter 50 value 84.561356 iter 60 value 83.811014 iter 70 value 83.083734 iter 80 value 82.626446 iter 90 value 82.551354 iter 100 value 82.285699 final value 82.285699 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 109.646285 iter 10 value 94.601159 iter 20 value 94.494221 iter 30 value 94.204972 iter 40 value 88.651526 iter 50 value 86.216134 iter 60 value 85.215449 iter 70 value 83.735805 iter 80 value 82.707325 iter 90 value 82.497569 iter 100 value 82.279279 final value 82.279279 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 106.156216 iter 10 value 94.480847 iter 20 value 93.491645 iter 30 value 90.444425 iter 40 value 87.826286 iter 50 value 86.200750 iter 60 value 85.968616 iter 70 value 85.619655 iter 80 value 85.072079 iter 90 value 83.193735 iter 100 value 82.737835 final value 82.737835 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 100.419692 iter 10 value 92.381735 iter 20 value 88.560706 iter 30 value 86.649434 iter 40 value 84.047220 iter 50 value 84.010508 iter 60 value 83.993029 iter 70 value 83.980288 iter 80 value 83.973411 iter 90 value 83.944852 iter 100 value 83.276087 final value 83.276087 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 102.880924 iter 10 value 94.434156 iter 20 value 86.212039 iter 30 value 85.489003 iter 40 value 85.209529 iter 50 value 84.049522 iter 60 value 82.980122 iter 70 value 82.319962 iter 80 value 82.127130 iter 90 value 82.030314 iter 100 value 81.952384 final value 81.952384 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 112.207207 iter 10 value 94.754207 iter 20 value 94.135421 iter 30 value 87.239778 iter 40 value 84.448481 iter 50 value 83.289794 iter 60 value 82.756605 iter 70 value 82.537408 iter 80 value 82.480557 iter 90 value 82.340094 iter 100 value 82.208683 final value 82.208683 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 115.717263 iter 10 value 94.499639 iter 20 value 90.376823 iter 30 value 86.117624 iter 40 value 85.777208 iter 50 value 84.974461 iter 60 value 84.071878 iter 70 value 83.685624 iter 80 value 83.636952 iter 90 value 83.625136 iter 100 value 83.402412 final value 83.402412 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 116.886666 iter 10 value 94.596948 iter 20 value 93.583913 iter 30 value 91.142619 iter 40 value 89.177422 iter 50 value 85.017098 iter 60 value 82.946939 iter 70 value 82.538440 iter 80 value 82.356070 iter 90 value 82.169047 iter 100 value 82.053539 final value 82.053539 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 113.748625 iter 10 value 95.625067 iter 20 value 90.902775 iter 30 value 88.290573 iter 40 value 87.132373 iter 50 value 85.896161 iter 60 value 85.233123 iter 70 value 84.807962 iter 80 value 84.193262 iter 90 value 84.123542 iter 100 value 83.893484 final value 83.893484 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 99.995009 final value 94.485724 converged Fitting Repeat 2 # weights: 103 initial value 101.070579 iter 10 value 94.469199 iter 20 value 94.467443 final value 94.467407 converged Fitting Repeat 3 # weights: 103 initial value 97.105563 final value 94.485848 converged Fitting Repeat 4 # weights: 103 initial value 106.440268 iter 10 value 94.486241 iter 20 value 87.663210 iter 30 value 87.604503 iter 40 value 86.959422 iter 50 value 86.957725 iter 60 value 86.845472 iter 70 value 85.107393 iter 80 value 85.104320 iter 80 value 85.104320 final value 85.104307 converged Fitting Repeat 5 # weights: 103 initial value 100.746044 final value 94.485859 converged Fitting Repeat 1 # weights: 305 initial value 94.812045 iter 10 value 94.484903 iter 20 value 94.483509 iter 30 value 94.467412 iter 30 value 94.467411 iter 30 value 94.467411 final value 94.467411 converged Fitting Repeat 2 # weights: 305 initial value 96.905222 iter 10 value 94.487900 iter 20 value 93.514330 iter 30 value 87.940517 iter 40 value 87.932908 iter 50 value 87.930757 iter 60 value 87.172391 iter 70 value 86.957702 final value 86.957100 converged Fitting Repeat 3 # weights: 305 initial value 106.560950 iter 10 value 94.472396 iter 20 value 94.465780 iter 30 value 93.389490 iter 40 value 93.141871 iter 50 value 93.139030 iter 50 value 93.139030 final value 93.139030 converged Fitting Repeat 4 # weights: 305 initial value 95.223916 iter 10 value 94.306660 iter 20 value 94.303526 iter 30 value 94.302011 final value 94.302008 converged Fitting Repeat 5 # weights: 305 initial value 116.420748 iter 10 value 94.489185 iter 20 value 94.481467 iter 30 value 94.348620 iter 40 value 94.323861 iter 50 value 87.338242 iter 60 value 86.529416 iter 70 value 86.400175 iter 80 value 84.508192 iter 90 value 84.352871 iter 100 value 84.297794 final value 84.297794 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 106.601939 iter 10 value 94.475823 iter 20 value 94.474884 iter 30 value 94.458826 iter 40 value 94.421779 iter 50 value 94.412795 iter 60 value 92.057814 iter 70 value 84.448569 iter 80 value 84.024257 iter 90 value 83.889499 iter 100 value 83.885461 final value 83.885461 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 109.659742 iter 10 value 94.492441 iter 20 value 94.279053 iter 30 value 88.500915 iter 40 value 85.344131 iter 50 value 84.685317 iter 60 value 84.295411 iter 70 value 84.188532 iter 80 value 84.124969 iter 90 value 83.998967 iter 100 value 83.997384 final value 83.997384 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 116.209864 iter 10 value 94.423474 iter 20 value 94.418841 iter 30 value 94.414997 iter 40 value 91.170327 iter 50 value 87.051570 iter 60 value 85.476170 iter 70 value 85.217174 iter 80 value 83.846765 iter 90 value 83.004420 iter 100 value 83.002179 final value 83.002179 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 100.641379 iter 10 value 94.475698 iter 20 value 94.468261 iter 30 value 94.435839 iter 40 value 85.743929 iter 50 value 84.347827 iter 60 value 83.839562 iter 70 value 83.829642 iter 80 value 83.825805 iter 90 value 83.820423 iter 100 value 83.819527 final value 83.819527 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 113.393541 iter 10 value 94.331213 iter 20 value 93.248233 iter 30 value 93.166198 iter 40 value 92.918559 iter 50 value 92.903207 iter 60 value 92.794978 iter 70 value 92.664682 iter 80 value 92.584510 final value 92.584323 converged Fitting Repeat 1 # weights: 103 initial value 97.728847 final value 94.052910 converged Fitting Repeat 2 # weights: 103 initial value 96.735976 final value 94.052910 converged Fitting Repeat 3 # weights: 103 initial value 95.004381 final value 94.052910 converged Fitting Repeat 4 # weights: 103 initial value 103.934489 final value 94.052910 converged Fitting Repeat 5 # weights: 103 initial value 100.734913 final value 94.052910 converged Fitting Repeat 1 # weights: 305 initial value 112.600025 final value 94.052448 converged Fitting Repeat 2 # weights: 305 initial value 95.998612 final value 94.052910 converged Fitting Repeat 3 # weights: 305 initial value 96.840124 final value 94.052910 converged Fitting Repeat 4 # weights: 305 initial value 98.253219 iter 10 value 93.582418 iter 10 value 93.582418 iter 10 value 93.582418 final value 93.582418 converged Fitting Repeat 5 # weights: 305 initial value 96.761808 iter 10 value 90.642588 iter 20 value 87.624853 iter 30 value 85.149714 iter 40 value 82.628319 iter 50 value 82.536752 iter 60 value 82.441284 iter 70 value 82.438388 final value 82.438368 converged Fitting Repeat 1 # weights: 507 initial value 109.284795 final value 93.582418 converged Fitting Repeat 2 # weights: 507 initial value 94.773127 final value 93.582417 converged Fitting Repeat 3 # weights: 507 initial value 106.131732 iter 10 value 93.805694 iter 20 value 93.804881 final value 93.804879 converged Fitting Repeat 4 # weights: 507 initial value 126.360729 final value 93.860355 converged Fitting Repeat 5 # weights: 507 initial value 99.604914 iter 10 value 93.130583 iter 20 value 88.133566 iter 30 value 85.570874 iter 40 value 84.866402 final value 84.865718 converged Fitting Repeat 1 # weights: 103 initial value 95.922062 iter 10 value 94.044214 iter 20 value 88.398643 iter 30 value 87.813250 iter 40 value 86.693955 iter 50 value 84.686570 iter 60 value 84.502195 iter 70 value 84.207825 iter 80 value 83.093473 iter 90 value 82.942497 iter 100 value 82.919458 final value 82.919458 stopped after 100 iterations Fitting Repeat 2 # weights: 103 initial value 108.638089 iter 10 value 93.883208 iter 20 value 87.182112 iter 30 value 85.862467 iter 40 value 83.958441 iter 50 value 83.342488 iter 60 value 82.951961 iter 70 value 82.927087 final value 82.917702 converged Fitting Repeat 3 # weights: 103 initial value 99.903265 iter 10 value 93.973538 iter 20 value 88.876707 iter 30 value 87.641641 iter 40 value 87.008320 iter 50 value 86.411579 iter 60 value 85.423478 iter 70 value 83.851299 iter 80 value 83.548789 iter 90 value 83.533506 iter 100 value 83.272367 final value 83.272367 stopped after 100 iterations Fitting Repeat 4 # weights: 103 initial value 97.849989 iter 10 value 94.056471 iter 20 value 93.942091 iter 30 value 90.241492 iter 40 value 86.983452 iter 50 value 85.750015 iter 60 value 85.547929 iter 70 value 85.455753 final value 85.454215 converged Fitting Repeat 5 # weights: 103 initial value 100.536704 iter 10 value 94.057104 iter 20 value 90.129832 iter 30 value 86.740289 iter 40 value 85.281053 iter 50 value 85.042329 iter 60 value 84.748702 iter 70 value 84.533585 iter 80 value 84.495385 iter 90 value 83.775150 iter 100 value 82.943436 final value 82.943436 stopped after 100 iterations Fitting Repeat 1 # weights: 305 initial value 100.224233 iter 10 value 94.058246 iter 20 value 92.202978 iter 30 value 91.463601 iter 40 value 89.430620 iter 50 value 84.544534 iter 60 value 82.948068 iter 70 value 81.754495 iter 80 value 81.662130 iter 90 value 81.583257 iter 100 value 81.557473 final value 81.557473 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 108.306282 iter 10 value 92.698640 iter 20 value 89.387477 iter 30 value 88.487872 iter 40 value 87.089760 iter 50 value 85.571259 iter 60 value 84.626992 iter 70 value 84.203474 iter 80 value 83.856082 iter 90 value 83.357843 iter 100 value 81.927473 final value 81.927473 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 105.687165 iter 10 value 91.636560 iter 20 value 88.776133 iter 30 value 87.710202 iter 40 value 84.095161 iter 50 value 82.724605 iter 60 value 82.331773 iter 70 value 81.775889 iter 80 value 81.640463 iter 90 value 81.265627 iter 100 value 81.065476 final value 81.065476 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 101.792621 iter 10 value 96.228219 iter 20 value 93.784447 iter 30 value 92.435673 iter 40 value 90.108685 iter 50 value 86.786385 iter 60 value 84.107752 iter 70 value 82.742330 iter 80 value 82.273443 iter 90 value 82.223401 iter 100 value 82.166043 final value 82.166043 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 101.444971 iter 10 value 94.096621 iter 20 value 92.951085 iter 30 value 88.693216 iter 40 value 87.362968 iter 50 value 86.517695 iter 60 value 86.300955 iter 70 value 82.945692 iter 80 value 81.902011 iter 90 value 81.507869 iter 100 value 81.388383 final value 81.388383 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 108.322121 iter 10 value 93.707089 iter 20 value 89.525148 iter 30 value 86.772357 iter 40 value 85.153111 iter 50 value 84.290483 iter 60 value 83.492749 iter 70 value 82.576860 iter 80 value 82.259544 iter 90 value 81.978219 iter 100 value 81.670194 final value 81.670194 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 117.456348 iter 10 value 94.444143 iter 20 value 93.539329 iter 30 value 89.314619 iter 40 value 88.966814 iter 50 value 88.572318 iter 60 value 87.294287 iter 70 value 85.117267 iter 80 value 84.247435 iter 90 value 83.990884 iter 100 value 82.622627 final value 82.622627 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 103.311493 iter 10 value 94.056085 iter 20 value 92.834119 iter 30 value 90.251058 iter 40 value 88.946760 iter 50 value 88.439840 iter 60 value 85.061342 iter 70 value 83.346838 iter 80 value 82.899443 iter 90 value 82.096537 iter 100 value 82.029147 final value 82.029147 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 103.373241 iter 10 value 94.227398 iter 20 value 91.635233 iter 30 value 88.912063 iter 40 value 85.737249 iter 50 value 83.236538 iter 60 value 82.753385 iter 70 value 82.228044 iter 80 value 81.766481 iter 90 value 81.407288 iter 100 value 81.308010 final value 81.308010 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 103.223688 iter 10 value 94.096426 iter 20 value 91.639886 iter 30 value 87.822315 iter 40 value 83.610749 iter 50 value 82.400702 iter 60 value 82.274689 iter 70 value 81.958851 iter 80 value 81.646567 iter 90 value 81.412190 iter 100 value 81.126786 final value 81.126786 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 100.780598 iter 10 value 94.054694 iter 20 value 93.828165 iter 30 value 93.599984 final value 93.599880 converged Fitting Repeat 2 # weights: 103 initial value 104.877374 final value 94.054750 converged Fitting Repeat 3 # weights: 103 initial value 98.012980 final value 94.054587 converged Fitting Repeat 4 # weights: 103 initial value 99.512766 final value 94.054444 converged Fitting Repeat 5 # weights: 103 initial value 104.445410 final value 94.057497 converged Fitting Repeat 1 # weights: 305 initial value 110.076886 iter 10 value 93.588251 iter 20 value 93.586928 iter 30 value 93.454405 iter 40 value 90.642488 iter 50 value 90.053567 iter 60 value 89.800431 iter 70 value 89.694986 final value 89.694910 converged Fitting Repeat 2 # weights: 305 initial value 101.338388 iter 10 value 94.057428 iter 20 value 94.052919 iter 20 value 94.052918 iter 20 value 94.052918 final value 94.052918 converged Fitting Repeat 3 # weights: 305 initial value 94.739504 iter 10 value 94.055459 iter 20 value 93.906840 iter 30 value 93.579455 final value 93.579363 converged Fitting Repeat 4 # weights: 305 initial value 100.327482 iter 10 value 94.058172 iter 20 value 94.052868 iter 30 value 93.583154 final value 93.582773 converged Fitting Repeat 5 # weights: 305 initial value 110.567639 iter 10 value 94.064768 iter 20 value 94.059377 iter 30 value 94.053917 iter 40 value 86.257605 iter 50 value 85.286135 iter 60 value 85.137219 iter 70 value 85.133037 final value 85.132511 converged Fitting Repeat 1 # weights: 507 initial value 105.219495 iter 10 value 91.689566 iter 20 value 85.836443 iter 30 value 84.527141 iter 40 value 84.505313 iter 50 value 84.500759 iter 60 value 84.459722 iter 70 value 84.304986 iter 80 value 84.132518 iter 90 value 84.125097 iter 100 value 84.124709 final value 84.124709 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 124.294214 iter 10 value 93.591343 iter 20 value 93.585849 iter 30 value 93.585098 iter 40 value 93.583067 iter 50 value 93.189870 iter 60 value 93.148274 iter 70 value 93.147396 iter 80 value 93.090306 iter 90 value 93.013642 iter 100 value 93.012952 final value 93.012952 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 109.352380 iter 10 value 94.056907 iter 20 value 93.593830 iter 30 value 93.583450 iter 40 value 93.583034 iter 50 value 93.523952 iter 60 value 89.518849 iter 70 value 87.279432 iter 80 value 87.261213 final value 87.260997 converged Fitting Repeat 4 # weights: 507 initial value 95.991208 iter 10 value 93.594327 iter 20 value 93.583272 iter 30 value 93.524860 iter 40 value 87.071991 iter 50 value 86.606478 iter 60 value 86.536104 iter 70 value 86.518514 iter 80 value 85.707209 iter 90 value 85.056270 iter 100 value 85.055741 final value 85.055741 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 136.645690 iter 10 value 94.046164 iter 20 value 94.026387 iter 30 value 92.830875 iter 40 value 92.805864 iter 50 value 92.805446 iter 60 value 92.705414 iter 70 value 92.320718 iter 80 value 88.837478 iter 90 value 87.587676 iter 100 value 87.584398 final value 87.584398 stopped after 100 iterations Fitting Repeat 1 # weights: 305 initial value 128.584605 iter 10 value 117.763721 iter 20 value 117.759055 iter 30 value 117.524592 iter 40 value 112.719158 final value 108.528270 converged Fitting Repeat 2 # weights: 305 initial value 127.711511 iter 10 value 117.895463 iter 20 value 117.890416 iter 30 value 117.876963 iter 40 value 116.574220 iter 50 value 110.551725 iter 60 value 109.700328 iter 70 value 109.696020 iter 80 value 109.694905 iter 90 value 109.669001 iter 100 value 109.313676 final value 109.313676 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 123.191337 iter 10 value 117.892513 iter 20 value 117.760815 final value 117.758920 converged Fitting Repeat 4 # weights: 305 initial value 136.404133 iter 10 value 117.895612 iter 20 value 117.889464 iter 30 value 116.703688 iter 40 value 114.747495 iter 50 value 114.727587 final value 114.727026 converged Fitting Repeat 5 # weights: 305 initial value 132.582549 iter 10 value 114.920539 iter 20 value 114.666357 iter 30 value 114.320863 iter 40 value 113.114543 iter 50 value 108.812478 iter 60 value 106.620359 iter 70 value 104.915435 iter 80 value 104.375654 iter 90 value 104.373720 iter 100 value 104.337965 final value 104.337965 stopped after 100 iterations svmRadial ranger Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases RUNIT TEST PROTOCOL -- Wed May 22 03:00:05 2024 *********************************************** Number of test functions: 7 Number of errors: 0 Number of failures: 0 1 Test Suite : HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures Number of test functions: 7 Number of errors: 0 Number of failures: 0 Warning messages: 1: `repeats` has no meaning for this resampling method. 2: executing %dopar% sequentially: no parallel backend registered > > > > > proc.time() user system elapsed 45.04 1.37 47.26
HPiP.Rcheck/HPiP-Ex.timings
name | user | system | elapsed | |
FSmethod | 31.82 | 2.27 | 34.20 | |
FreqInteractors | 0.22 | 0.04 | 0.29 | |
calculateAAC | 0.05 | 0.02 | 0.06 | |
calculateAutocor | 0.44 | 0.08 | 0.51 | |
calculateCTDC | 0.06 | 0.02 | 0.08 | |
calculateCTDD | 0.72 | 0.04 | 0.77 | |
calculateCTDT | 0.25 | 0.02 | 0.26 | |
calculateCTriad | 0.36 | 0.05 | 0.41 | |
calculateDC | 0.15 | 0.00 | 0.16 | |
calculateF | 0.54 | 0.00 | 0.53 | |
calculateKSAAP | 0.15 | 0.01 | 0.17 | |
calculateQD_Sm | 2.16 | 0.21 | 2.36 | |
calculateTC | 1.53 | 0.14 | 1.67 | |
calculateTC_Sm | 0.25 | 0.01 | 0.27 | |
corr_plot | 30.98 | 2.05 | 33.04 | |
enrichfindP | 0.55 | 0.16 | 13.72 | |
enrichfind_hp | 0.09 | 0.00 | 1.02 | |
enrichplot | 0.32 | 0.03 | 0.34 | |
filter_missing_values | 0 | 0 | 0 | |
getFASTA | 0.01 | 0.07 | 2.17 | |
getHPI | 0 | 0 | 0 | |
get_negativePPI | 0 | 0 | 0 | |
get_positivePPI | 0 | 0 | 0 | |
impute_missing_data | 0 | 0 | 0 | |
plotPPI | 0.06 | 0.00 | 0.11 | |
pred_ensembel | 13.74 | 0.50 | 10.33 | |
var_imp | 32.08 | 1.18 | 33.27 | |