Back to Multiple platform build/check report for BioC 3.19: simplified long |
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This page was generated on 2024-06-07 20:27 -0400 (Fri, 07 Jun 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4755 |
palomino3 | Windows Server 2022 Datacenter | x64 | 4.4.0 (2024-04-24 ucrt) -- "Puppy Cup" | 4489 |
lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4520 |
kjohnson3 | macOS 13.6.5 Ventura | arm64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4466 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 987/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
HPiP 1.10.0 (landing page) Matineh Rahmatbakhsh
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kjohnson3 | macOS 13.6.5 Ventura / arm64 | OK | OK | OK | OK | |||||||||
To the developers/maintainers of the HPiP package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/HPiP.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: HPiP |
Version: 1.10.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.10.0.tar.gz |
StartedAt: 2024-06-05 20:59:40 -0400 (Wed, 05 Jun 2024) |
EndedAt: 2024-06-05 21:04:34 -0400 (Wed, 05 Jun 2024) |
EllapsedTime: 294.0 seconds |
RetCode: 0 |
Status: OK |
CheckDir: HPiP.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:HPiP.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings HPiP_1.10.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.19-bioc/meat/HPiP.Rcheck’ * using R version 4.4.0 (2024-04-24) * using platform: x86_64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Monterey 12.7.1 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘HPiP/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘HPiP’ version ‘1.10.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘HPiP’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... NOTE License stub is invalid DCF. * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... NOTE checkRd: (-1) getHPI.Rd:29: Lost braces 29 | then the Kronecker product is the code{(pm × qn)} block matrix | ^ * checking Rd metadata ... OK * checking Rd cross-references ... NOTE Package unavailable to check Rd xrefs: ‘ftrCOOL’ * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... OK * checking data for ASCII and uncompressed saves ... OK * checking R/sysdata.rda ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed var_imp 36.623 1.925 38.968 corr_plot 33.885 1.678 35.685 FSmethod 33.754 1.714 35.594 pred_ensembel 13.811 0.552 10.227 enrichfindP 0.495 0.066 8.623 * checking for unstated dependencies in ‘tests’ ... OK * checking tests ... Running ‘runTests.R’ OK * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: 3 NOTEs See ‘/Users/biocbuild/bbs-3.19-bioc/meat/HPiP.Rcheck/00check.log’ for details.
HPiP.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL HPiP ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’ * installing *source* package ‘HPiP’ ... ** using staged installation ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (HPiP)
HPiP.Rcheck/tests/runTests.Rout
R version 4.4.0 (2024-04-24) -- "Puppy Cup" Copyright (C) 2024 The R Foundation for Statistical Computing Platform: x86_64-apple-darwin20 R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. Type 'license()' or 'licence()' for distribution details. R is a collaborative project with many contributors. Type 'contributors()' for more information and 'citation()' on how to cite R or R packages in publications. Type 'demo()' for some demos, 'help()' for on-line help, or 'help.start()' for an HTML browser interface to help. Type 'q()' to quit R. > BiocGenerics:::testPackage('HPiP') No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE No results to show Please make sure that the organism is correct or set significant = FALSE avNNet Loading required package: ggplot2 Loading required package: lattice Fitting Repeat 1 # weights: 103 initial value 100.613360 final value 94.052910 converged Fitting Repeat 2 # weights: 103 initial value 95.799212 final value 94.052910 converged Fitting Repeat 3 # weights: 103 initial value 99.275354 final value 94.052910 converged Fitting Repeat 4 # weights: 103 initial value 94.695307 final value 94.052910 converged Fitting Repeat 5 # weights: 103 initial value 96.667828 final value 94.052910 converged Fitting Repeat 1 # weights: 305 initial value 105.296399 final value 94.052910 converged Fitting Repeat 2 # weights: 305 initial value 105.553993 iter 10 value 94.052910 iter 10 value 94.052910 iter 10 value 94.052910 final value 94.052910 converged Fitting Repeat 3 # weights: 305 initial value 97.052874 final value 94.052910 converged Fitting Repeat 4 # weights: 305 initial value 107.292149 iter 10 value 93.392069 iter 20 value 93.391581 iter 30 value 93.157336 iter 40 value 92.933622 final value 92.933616 converged Fitting Repeat 5 # weights: 305 initial value 96.847506 iter 10 value 90.516550 iter 20 value 89.861553 final value 89.861550 converged Fitting Repeat 1 # weights: 507 initial value 102.168102 final value 94.052911 converged Fitting Repeat 2 # weights: 507 initial value 97.367842 final value 93.535112 converged Fitting Repeat 3 # weights: 507 initial value 97.001263 iter 10 value 92.138796 iter 20 value 89.790206 iter 30 value 89.786770 iter 30 value 89.786770 final value 89.786770 converged Fitting Repeat 4 # weights: 507 initial value 103.119158 final value 94.052910 converged Fitting Repeat 5 # weights: 507 initial value 114.347522 iter 10 value 94.052910 iter 10 value 94.052910 iter 10 value 94.052910 final value 94.052910 converged Fitting Repeat 1 # weights: 103 initial value 97.532749 iter 10 value 94.056729 iter 20 value 94.012514 iter 30 value 93.168638 iter 40 value 92.879012 iter 50 value 92.777164 iter 60 value 87.810429 iter 70 value 86.007623 iter 80 value 84.753408 iter 90 value 84.719590 iter 100 value 84.711462 final value 84.711462 stopped after 100 iterations Fitting Repeat 2 # weights: 103 initial value 97.479029 iter 10 value 93.975522 iter 20 value 83.863184 iter 30 value 83.629957 iter 40 value 83.402041 iter 50 value 83.317190 iter 60 value 83.315483 final value 83.315482 converged Fitting Repeat 3 # weights: 103 initial value 97.436163 iter 10 value 93.820907 iter 20 value 88.039074 iter 30 value 87.839409 iter 40 value 83.633845 iter 50 value 83.196104 iter 60 value 83.142014 iter 70 value 83.132541 iter 70 value 83.132540 iter 70 value 83.132540 final value 83.132540 converged Fitting Repeat 4 # weights: 103 initial value 95.616898 iter 10 value 94.056500 iter 20 value 93.603786 iter 30 value 93.437929 iter 40 value 92.833710 iter 50 value 92.741517 iter 60 value 85.560626 iter 70 value 85.230504 iter 80 value 83.764223 iter 90 value 82.128743 iter 100 value 80.501324 final value 80.501324 stopped after 100 iterations Fitting Repeat 5 # weights: 103 initial value 99.060560 iter 10 value 93.537394 iter 20 value 88.402434 iter 30 value 87.495891 iter 40 value 84.998301 iter 50 value 84.067928 iter 60 value 82.936455 iter 70 value 82.738146 iter 80 value 82.715618 final value 82.713945 converged Fitting Repeat 1 # weights: 305 initial value 107.609473 iter 10 value 94.409802 iter 20 value 94.067287 iter 30 value 94.020716 iter 40 value 85.098426 iter 50 value 84.149997 iter 60 value 83.972714 iter 70 value 82.875247 iter 80 value 80.064904 iter 90 value 78.858796 iter 100 value 78.723512 final value 78.723512 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 101.922561 iter 10 value 94.081555 iter 20 value 85.517175 iter 30 value 83.818064 iter 40 value 83.237467 iter 50 value 83.016931 iter 60 value 82.902546 iter 70 value 82.694277 iter 80 value 81.066095 iter 90 value 80.018051 iter 100 value 78.605110 final value 78.605110 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 113.311500 iter 10 value 94.011317 iter 20 value 88.051869 iter 30 value 87.705623 iter 40 value 84.907840 iter 50 value 82.556916 iter 60 value 81.684168 iter 70 value 80.915487 iter 80 value 80.710262 iter 90 value 80.463356 iter 100 value 80.434447 final value 80.434447 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 99.231925 iter 10 value 94.187506 iter 20 value 93.888788 iter 30 value 83.630306 iter 40 value 82.987828 iter 50 value 82.362753 iter 60 value 81.738767 iter 70 value 80.301120 iter 80 value 79.091948 iter 90 value 78.846998 iter 100 value 78.638756 final value 78.638756 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 107.007002 iter 10 value 94.680371 iter 20 value 85.963388 iter 30 value 84.503368 iter 40 value 84.165149 iter 50 value 83.230407 iter 60 value 81.525530 iter 70 value 80.644316 iter 80 value 80.242179 iter 90 value 79.941672 iter 100 value 79.790732 final value 79.790732 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 116.181885 iter 10 value 90.810343 iter 20 value 84.496846 iter 30 value 83.212736 iter 40 value 82.229617 iter 50 value 80.640407 iter 60 value 79.139261 iter 70 value 78.838199 iter 80 value 78.632669 iter 90 value 78.517624 iter 100 value 78.489935 final value 78.489935 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 114.792788 iter 10 value 94.783617 iter 20 value 92.631814 iter 30 value 89.459833 iter 40 value 86.155107 iter 50 value 83.143057 iter 60 value 81.268791 iter 70 value 80.343309 iter 80 value 79.797076 iter 90 value 79.486732 iter 100 value 79.450579 final value 79.450579 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 102.866777 iter 10 value 94.068093 iter 20 value 93.643662 iter 30 value 93.598647 iter 40 value 90.994093 iter 50 value 83.202477 iter 60 value 81.059625 iter 70 value 80.626818 iter 80 value 80.077423 iter 90 value 79.062033 iter 100 value 78.651293 final value 78.651293 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 104.684795 iter 10 value 93.249545 iter 20 value 89.287519 iter 30 value 83.610694 iter 40 value 83.166768 iter 50 value 81.082230 iter 60 value 79.307833 iter 70 value 78.707167 iter 80 value 78.470271 iter 90 value 78.228087 iter 100 value 78.083093 final value 78.083093 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 117.472882 iter 10 value 91.340000 iter 20 value 84.147285 iter 30 value 82.899863 iter 40 value 81.462763 iter 50 value 80.915064 iter 60 value 79.639344 iter 70 value 78.773804 iter 80 value 78.621588 iter 90 value 78.373006 iter 100 value 78.134047 final value 78.134047 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 99.480432 final value 94.054616 converged Fitting Repeat 2 # weights: 103 initial value 95.999665 iter 10 value 93.469954 final value 93.358335 converged Fitting Repeat 3 # weights: 103 initial value 94.763385 final value 94.054349 converged Fitting Repeat 4 # weights: 103 initial value 99.093127 final value 94.054761 converged Fitting Repeat 5 # weights: 103 initial value 96.978880 iter 10 value 94.054463 iter 20 value 84.310549 iter 30 value 83.371143 iter 40 value 83.286372 final value 83.286370 converged Fitting Repeat 1 # weights: 305 initial value 108.401699 iter 10 value 94.049358 iter 20 value 93.339714 iter 30 value 86.642342 iter 40 value 86.620710 iter 50 value 85.585387 final value 85.585344 converged Fitting Repeat 2 # weights: 305 initial value 105.714077 iter 10 value 93.397450 iter 20 value 93.394108 iter 30 value 93.392261 iter 40 value 92.210890 iter 50 value 92.018886 iter 60 value 90.992320 iter 70 value 87.419560 iter 80 value 87.334222 iter 90 value 87.020293 iter 100 value 86.891528 final value 86.891528 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 108.461771 iter 10 value 94.057754 iter 20 value 94.053113 iter 30 value 93.762433 iter 40 value 86.639400 iter 50 value 84.511120 iter 60 value 84.500243 final value 84.500086 converged Fitting Repeat 4 # weights: 305 initial value 101.272025 iter 10 value 94.057533 iter 20 value 93.977699 iter 30 value 92.145350 iter 40 value 91.991816 iter 50 value 91.989795 iter 60 value 91.989120 iter 70 value 84.667857 iter 80 value 82.722883 iter 90 value 82.685290 iter 100 value 82.574553 final value 82.574553 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 102.159772 iter 10 value 93.396804 iter 20 value 93.391004 iter 30 value 90.860800 iter 40 value 83.787517 iter 50 value 83.366674 iter 60 value 83.242638 iter 70 value 83.239793 final value 83.239744 converged Fitting Repeat 1 # weights: 507 initial value 105.100083 iter 10 value 89.420177 iter 20 value 88.823643 iter 30 value 88.423747 iter 40 value 88.420269 iter 50 value 86.844209 iter 60 value 86.735443 iter 70 value 86.734741 iter 80 value 86.734137 iter 80 value 86.734136 final value 86.734136 converged Fitting Repeat 2 # weights: 507 initial value 105.717618 iter 10 value 93.400862 iter 20 value 93.394350 iter 30 value 86.565147 iter 40 value 85.717709 iter 50 value 85.702652 final value 85.702633 converged Fitting Repeat 3 # weights: 507 initial value 100.365256 iter 10 value 94.061547 iter 20 value 93.991577 final value 93.357811 converged Fitting Repeat 4 # weights: 507 initial value 117.110106 iter 10 value 94.052997 iter 20 value 93.964659 iter 30 value 93.329416 iter 40 value 92.701627 final value 92.701282 converged Fitting Repeat 5 # weights: 507 initial value 114.678400 iter 10 value 91.736444 iter 20 value 91.727194 iter 30 value 91.623684 iter 40 value 91.615278 final value 91.614743 converged Fitting Repeat 1 # weights: 103 initial value 105.123368 final value 94.354396 converged Fitting Repeat 2 # weights: 103 initial value 126.083411 final value 94.484211 converged Fitting Repeat 3 # weights: 103 initial value 102.977805 final value 94.484211 converged Fitting Repeat 4 # weights: 103 initial value 98.477568 final value 94.484211 converged Fitting Repeat 5 # weights: 103 initial value 95.145499 final value 94.484211 converged Fitting Repeat 1 # weights: 305 initial value 118.784969 iter 10 value 94.354484 final value 94.354396 converged Fitting Repeat 2 # weights: 305 initial value 97.849284 final value 94.484211 converged Fitting Repeat 3 # weights: 305 initial value 98.544946 final value 94.484211 converged Fitting Repeat 4 # weights: 305 initial value 103.349253 final value 94.484211 converged Fitting Repeat 5 # weights: 305 initial value 106.450585 final value 94.484211 converged Fitting Repeat 1 # weights: 507 initial value 95.970495 iter 10 value 91.976488 final value 91.976472 converged Fitting Repeat 2 # weights: 507 initial value 107.148276 final value 94.354396 converged Fitting Repeat 3 # weights: 507 initial value 105.198452 final value 94.484211 converged Fitting Repeat 4 # weights: 507 initial value 97.033001 final value 94.354396 converged Fitting Repeat 5 # weights: 507 initial value 112.411545 final value 94.484211 converged Fitting Repeat 1 # weights: 103 initial value 101.027096 iter 10 value 94.436996 iter 20 value 93.641562 iter 30 value 93.535093 iter 40 value 93.526980 iter 50 value 93.131258 iter 60 value 91.146474 iter 70 value 91.032727 iter 80 value 91.031609 final value 91.031605 converged Fitting Repeat 2 # weights: 103 initial value 106.527042 iter 10 value 94.363562 iter 20 value 93.757046 iter 30 value 93.672143 iter 40 value 93.660361 iter 50 value 86.856390 iter 60 value 81.957163 iter 70 value 81.600515 iter 80 value 81.014475 iter 90 value 80.900564 iter 100 value 80.556782 final value 80.556782 stopped after 100 iterations Fitting Repeat 3 # weights: 103 initial value 96.806048 iter 10 value 94.488553 iter 20 value 94.186998 iter 30 value 87.930236 iter 40 value 84.429560 iter 50 value 82.712188 iter 60 value 82.539851 iter 70 value 81.571737 iter 80 value 81.083588 iter 90 value 80.801570 iter 100 value 80.498369 final value 80.498369 stopped after 100 iterations Fitting Repeat 4 # weights: 103 initial value 97.639401 iter 10 value 94.120163 iter 20 value 93.726857 iter 30 value 89.662430 iter 40 value 85.332566 iter 50 value 84.293530 iter 60 value 82.190264 iter 70 value 82.038206 iter 80 value 82.023435 iter 90 value 82.022949 iter 100 value 82.022606 final value 82.022606 stopped after 100 iterations Fitting Repeat 5 # weights: 103 initial value 96.656529 iter 10 value 94.413075 iter 20 value 84.544269 iter 30 value 83.771081 iter 40 value 82.866796 iter 50 value 82.588940 iter 60 value 82.566998 final value 82.566505 converged Fitting Repeat 1 # weights: 305 initial value 109.179394 iter 10 value 94.479236 iter 20 value 93.896634 iter 30 value 83.718347 iter 40 value 83.432087 iter 50 value 83.209627 iter 60 value 82.630318 iter 70 value 81.623846 iter 80 value 80.271408 iter 90 value 80.084604 iter 100 value 80.016101 final value 80.016101 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 113.278169 iter 10 value 94.549556 iter 20 value 91.742890 iter 30 value 86.701658 iter 40 value 86.197071 iter 50 value 86.072345 iter 60 value 85.938630 iter 70 value 85.459860 iter 80 value 80.026941 iter 90 value 78.897595 iter 100 value 78.648652 final value 78.648652 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 100.799932 iter 10 value 93.839645 iter 20 value 83.777603 iter 30 value 82.848354 iter 40 value 80.884779 iter 50 value 80.078713 iter 60 value 79.478241 iter 70 value 79.378447 iter 80 value 78.926459 iter 90 value 78.295115 iter 100 value 78.115999 final value 78.115999 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 124.312870 iter 10 value 94.538437 iter 20 value 93.785733 iter 30 value 85.043481 iter 40 value 83.842149 iter 50 value 82.873571 iter 60 value 82.730439 iter 70 value 82.691180 iter 80 value 82.604343 iter 90 value 81.964930 iter 100 value 80.281560 final value 80.281560 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 101.605238 iter 10 value 95.746532 iter 20 value 89.904133 iter 30 value 85.321564 iter 40 value 84.504609 iter 50 value 82.328399 iter 60 value 81.499831 iter 70 value 80.723092 iter 80 value 80.283214 iter 90 value 80.106377 iter 100 value 79.975970 final value 79.975970 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 131.024212 iter 10 value 92.312080 iter 20 value 88.557134 iter 30 value 81.708482 iter 40 value 80.554040 iter 50 value 78.771639 iter 60 value 78.514343 iter 70 value 78.273105 iter 80 value 78.206855 iter 90 value 78.072245 iter 100 value 78.057062 final value 78.057062 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 117.087011 iter 10 value 94.537078 iter 20 value 91.898909 iter 30 value 82.774835 iter 40 value 82.047293 iter 50 value 80.496959 iter 60 value 79.310888 iter 70 value 79.023021 iter 80 value 78.800747 iter 90 value 78.653886 iter 100 value 78.465759 final value 78.465759 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 105.495298 iter 10 value 95.695676 iter 20 value 90.626956 iter 30 value 88.204133 iter 40 value 84.344161 iter 50 value 83.066505 iter 60 value 80.617151 iter 70 value 79.265158 iter 80 value 78.705734 iter 90 value 78.142943 iter 100 value 78.100688 final value 78.100688 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 131.205210 iter 10 value 94.989681 iter 20 value 94.242585 iter 30 value 88.039383 iter 40 value 83.014997 iter 50 value 81.855861 iter 60 value 81.707019 iter 70 value 80.643001 iter 80 value 80.312790 iter 90 value 80.164534 iter 100 value 80.081137 final value 80.081137 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 110.191069 iter 10 value 96.901448 iter 20 value 91.924870 iter 30 value 88.204017 iter 40 value 85.131263 iter 50 value 81.987933 iter 60 value 80.816921 iter 70 value 79.442751 iter 80 value 78.369610 iter 90 value 78.148094 iter 100 value 77.935896 final value 77.935896 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 99.849808 final value 94.485767 converged Fitting Repeat 2 # weights: 103 initial value 107.821723 final value 94.485810 converged Fitting Repeat 3 # weights: 103 initial value 101.250589 iter 10 value 86.313424 iter 20 value 82.343415 iter 30 value 82.314409 iter 40 value 82.314146 iter 50 value 82.274786 final value 82.274492 converged Fitting Repeat 4 # weights: 103 initial value 97.293968 final value 94.146199 converged Fitting Repeat 5 # weights: 103 initial value 99.176911 final value 94.485642 converged Fitting Repeat 1 # weights: 305 initial value 96.555999 iter 10 value 94.359080 iter 20 value 94.354635 final value 94.354467 converged Fitting Repeat 2 # weights: 305 initial value 95.195842 iter 10 value 94.040779 iter 20 value 94.039141 iter 30 value 94.038671 iter 40 value 94.038235 iter 50 value 93.826334 iter 60 value 90.330553 iter 70 value 85.544791 iter 80 value 85.543481 iter 90 value 85.188270 iter 100 value 83.000766 final value 83.000766 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 113.722529 iter 10 value 94.492096 iter 20 value 94.396985 iter 30 value 84.472449 iter 40 value 84.437994 iter 50 value 84.436883 iter 60 value 84.275722 iter 70 value 84.158744 iter 80 value 83.792275 iter 90 value 80.841899 iter 100 value 80.693968 final value 80.693968 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 114.389145 iter 10 value 90.265797 iter 20 value 85.803357 iter 30 value 82.321220 iter 40 value 82.308632 iter 50 value 82.286972 final value 82.286689 converged Fitting Repeat 5 # weights: 305 initial value 99.516537 iter 10 value 94.337379 iter 20 value 94.024157 iter 30 value 83.814962 iter 40 value 82.277438 iter 50 value 82.275309 iter 60 value 82.274514 iter 70 value 82.262522 final value 82.261203 converged Fitting Repeat 1 # weights: 507 initial value 98.930397 iter 10 value 93.454973 iter 20 value 86.206955 iter 30 value 85.650415 iter 40 value 85.650109 iter 50 value 84.252854 iter 60 value 83.678337 iter 70 value 83.676871 iter 80 value 83.674398 iter 80 value 83.674398 iter 80 value 83.674398 final value 83.674398 converged Fitting Repeat 2 # weights: 507 initial value 103.744392 iter 10 value 94.215853 iter 20 value 94.131341 iter 30 value 93.861374 iter 40 value 93.658976 iter 50 value 93.448375 iter 60 value 93.445725 iter 70 value 92.005959 iter 80 value 83.019609 iter 90 value 81.661636 iter 100 value 80.268749 final value 80.268749 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 104.341718 iter 10 value 94.492163 iter 20 value 94.484234 iter 30 value 93.804808 iter 40 value 86.948877 iter 50 value 86.354005 iter 60 value 86.352457 iter 70 value 86.351393 iter 80 value 85.522648 iter 90 value 82.461129 iter 100 value 78.499856 final value 78.499856 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 100.629298 iter 10 value 94.334260 iter 20 value 94.052653 iter 30 value 94.035036 iter 40 value 93.682129 iter 50 value 86.289268 iter 60 value 80.358518 iter 70 value 80.306138 iter 80 value 80.300600 iter 90 value 80.197784 iter 100 value 80.191080 final value 80.191080 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 111.919288 iter 10 value 94.362210 iter 20 value 94.005065 iter 30 value 86.848785 iter 40 value 85.862485 iter 50 value 85.651954 iter 60 value 85.403742 iter 70 value 83.603809 iter 80 value 81.229596 iter 90 value 81.153216 iter 100 value 80.934494 final value 80.934494 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 97.497665 final value 94.484211 converged Fitting Repeat 2 # weights: 103 initial value 98.035634 final value 94.484211 converged Fitting Repeat 3 # weights: 103 initial value 101.685822 final value 94.484211 converged Fitting Repeat 4 # weights: 103 initial value 100.084995 final value 94.484211 converged Fitting Repeat 5 # weights: 103 initial value 98.082269 final value 94.484211 converged Fitting Repeat 1 # weights: 305 initial value 101.531868 final value 94.484211 converged Fitting Repeat 2 # weights: 305 initial value 120.406592 final value 94.484211 converged Fitting Repeat 3 # weights: 305 initial value 100.030256 final value 94.473118 converged Fitting Repeat 4 # weights: 305 initial value 101.726290 final value 94.026542 converged Fitting Repeat 5 # weights: 305 initial value 103.593380 final value 94.484211 converged Fitting Repeat 1 # weights: 507 initial value 98.040884 final value 94.484211 converged Fitting Repeat 2 # weights: 507 initial value 101.682916 iter 10 value 85.586644 iter 20 value 84.551058 final value 84.533333 converged Fitting Repeat 3 # weights: 507 initial value 113.064869 final value 94.484211 converged Fitting Repeat 4 # weights: 507 initial value 104.793334 iter 10 value 94.026542 iter 10 value 94.026542 iter 10 value 94.026542 final value 94.026542 converged Fitting Repeat 5 # weights: 507 initial value 99.468597 final value 94.484211 converged Fitting Repeat 1 # weights: 103 initial value 100.669587 iter 10 value 94.033731 iter 20 value 83.600350 iter 30 value 83.108953 iter 40 value 82.447436 iter 50 value 81.588555 iter 60 value 81.175134 iter 70 value 81.157029 final value 81.157021 converged Fitting Repeat 2 # weights: 103 initial value 98.896025 iter 10 value 94.450367 iter 20 value 91.905833 iter 30 value 91.635284 iter 40 value 91.611241 iter 50 value 91.545150 iter 60 value 90.307994 iter 70 value 82.921932 iter 80 value 82.300555 iter 90 value 82.122430 iter 100 value 81.829269 final value 81.829269 stopped after 100 iterations Fitting Repeat 3 # weights: 103 initial value 100.067260 iter 10 value 93.466779 iter 20 value 83.565352 iter 30 value 82.558984 iter 40 value 81.997413 iter 50 value 81.858897 iter 60 value 81.435413 iter 70 value 81.162005 final value 81.157021 converged Fitting Repeat 4 # weights: 103 initial value 100.574039 iter 10 value 94.459149 iter 20 value 91.317881 iter 30 value 91.087326 iter 40 value 90.844148 iter 50 value 90.795355 final value 90.795340 converged Fitting Repeat 5 # weights: 103 initial value 96.208364 iter 10 value 85.457349 iter 20 value 83.777177 iter 30 value 82.573446 iter 40 value 82.300409 iter 50 value 82.007587 iter 60 value 81.657348 iter 70 value 80.867664 iter 80 value 80.556207 iter 90 value 80.524894 final value 80.524837 converged Fitting Repeat 1 # weights: 305 initial value 109.587910 iter 10 value 94.550704 iter 20 value 92.446441 iter 30 value 85.900704 iter 40 value 85.062350 iter 50 value 83.245372 iter 60 value 82.961829 iter 70 value 82.715683 iter 80 value 82.195168 iter 90 value 80.580218 iter 100 value 79.986149 final value 79.986149 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 111.999325 iter 10 value 90.044274 iter 20 value 83.811616 iter 30 value 82.958485 iter 40 value 82.130186 iter 50 value 80.836321 iter 60 value 80.107902 iter 70 value 79.774532 iter 80 value 79.640891 iter 90 value 79.414619 iter 100 value 79.248886 final value 79.248886 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 100.415637 iter 10 value 94.430740 iter 20 value 85.038803 iter 30 value 83.237399 iter 40 value 83.094906 iter 50 value 81.555387 iter 60 value 80.318026 iter 70 value 79.826253 iter 80 value 79.716565 iter 90 value 79.644416 iter 100 value 79.468208 final value 79.468208 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 130.553938 iter 10 value 94.500400 iter 20 value 92.837354 iter 30 value 87.165795 iter 40 value 84.077435 iter 50 value 81.342352 iter 60 value 80.486270 iter 70 value 79.992496 iter 80 value 79.776916 iter 90 value 79.614532 iter 100 value 79.452026 final value 79.452026 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 103.172693 iter 10 value 94.632438 iter 20 value 93.582731 iter 30 value 90.928325 iter 40 value 90.440667 iter 50 value 90.209274 iter 60 value 89.759870 iter 70 value 87.704317 iter 80 value 83.348370 iter 90 value 82.385360 iter 100 value 81.506591 final value 81.506591 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 112.555799 iter 10 value 93.527234 iter 20 value 88.134592 iter 30 value 86.718622 iter 40 value 85.633531 iter 50 value 82.940109 iter 60 value 81.666988 iter 70 value 81.199289 iter 80 value 80.859729 iter 90 value 80.376717 iter 100 value 80.165522 final value 80.165522 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 110.364011 iter 10 value 94.482577 iter 20 value 91.087311 iter 30 value 82.955449 iter 40 value 81.497237 iter 50 value 80.575558 iter 60 value 80.414542 iter 70 value 80.119328 iter 80 value 80.048940 iter 90 value 80.009472 iter 100 value 79.942658 final value 79.942658 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 109.078723 iter 10 value 93.505668 iter 20 value 84.599999 iter 30 value 82.644128 iter 40 value 82.360764 iter 50 value 82.196720 iter 60 value 81.212165 iter 70 value 80.213241 iter 80 value 79.824824 iter 90 value 79.713366 iter 100 value 79.682772 final value 79.682772 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 117.978361 iter 10 value 92.320535 iter 20 value 86.310950 iter 30 value 84.843100 iter 40 value 83.485926 iter 50 value 82.907952 iter 60 value 81.410459 iter 70 value 80.632407 iter 80 value 80.193285 iter 90 value 79.698709 iter 100 value 79.656977 final value 79.656977 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 117.165786 iter 10 value 94.170861 iter 20 value 87.575169 iter 30 value 84.818783 iter 40 value 84.266518 iter 50 value 83.668374 iter 60 value 82.205024 iter 70 value 80.581285 iter 80 value 79.821056 iter 90 value 79.392140 iter 100 value 79.218113 final value 79.218113 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 97.241504 final value 94.486190 converged Fitting Repeat 2 # weights: 103 initial value 104.964465 final value 94.485893 converged Fitting Repeat 3 # weights: 103 initial value 96.677249 final value 94.485707 converged Fitting Repeat 4 # weights: 103 initial value 95.008874 final value 94.486071 converged Fitting Repeat 5 # weights: 103 initial value 103.905005 final value 94.485895 converged Fitting Repeat 1 # weights: 305 initial value 112.222849 iter 10 value 94.032495 iter 20 value 94.027582 iter 30 value 94.026819 iter 40 value 94.026771 iter 50 value 93.611346 iter 60 value 82.701957 iter 70 value 81.145484 iter 80 value 80.288235 iter 90 value 80.020023 iter 100 value 79.708537 final value 79.708537 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 96.918440 iter 10 value 94.489438 iter 20 value 94.341760 iter 30 value 90.763335 iter 40 value 90.758939 iter 50 value 89.991673 final value 89.980423 converged Fitting Repeat 3 # weights: 305 initial value 107.551656 iter 10 value 94.489830 iter 20 value 86.010282 iter 30 value 84.502508 iter 40 value 84.451851 iter 50 value 82.906270 iter 60 value 82.369785 final value 82.369753 converged Fitting Repeat 4 # weights: 305 initial value 106.949536 iter 10 value 94.166533 iter 20 value 92.234499 iter 30 value 92.233035 iter 40 value 90.704542 iter 50 value 89.370528 iter 60 value 89.333400 iter 70 value 89.333176 final value 89.333030 converged Fitting Repeat 5 # weights: 305 initial value 95.441563 iter 10 value 94.488804 iter 20 value 94.451537 iter 30 value 93.976474 final value 93.976469 converged Fitting Repeat 1 # weights: 507 initial value 96.304215 iter 10 value 94.492449 iter 20 value 94.478418 final value 94.027142 converged Fitting Repeat 2 # weights: 507 initial value 100.554135 iter 10 value 91.804736 iter 20 value 90.650214 iter 30 value 90.646202 iter 40 value 90.445461 iter 50 value 90.113238 iter 60 value 90.091215 iter 70 value 90.042697 iter 80 value 89.937856 iter 90 value 89.900751 iter 100 value 89.616069 final value 89.616069 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 101.174946 iter 10 value 94.492680 iter 20 value 94.461567 iter 30 value 90.964683 iter 40 value 90.609744 final value 90.609715 converged Fitting Repeat 4 # weights: 507 initial value 117.550542 iter 10 value 93.418421 iter 20 value 92.335901 iter 30 value 92.283847 iter 40 value 92.248804 iter 50 value 92.242375 iter 60 value 91.072476 iter 70 value 90.892328 iter 80 value 90.781203 iter 90 value 90.665844 iter 100 value 90.665580 final value 90.665580 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 114.420528 iter 10 value 93.628256 iter 20 value 85.383530 iter 30 value 84.571934 iter 40 value 84.519304 iter 50 value 84.239204 iter 60 value 83.365364 iter 70 value 83.192672 iter 80 value 83.192333 iter 90 value 83.192133 iter 100 value 83.191779 final value 83.191779 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 97.347919 final value 94.466823 converged Fitting Repeat 2 # weights: 103 initial value 96.287389 final value 94.484211 converged Fitting Repeat 3 # weights: 103 initial value 96.601859 final value 94.484211 converged Fitting Repeat 4 # weights: 103 initial value 97.800857 final value 94.484211 converged Fitting Repeat 5 # weights: 103 initial value 95.433374 final value 94.484211 converged Fitting Repeat 1 # weights: 305 initial value 95.047502 final value 94.484211 converged Fitting Repeat 2 # weights: 305 initial value 96.758997 final value 94.466823 converged Fitting Repeat 3 # weights: 305 initial value 95.608425 final value 94.466823 converged Fitting Repeat 4 # weights: 305 initial value 104.094131 final value 94.484211 converged Fitting Repeat 5 # weights: 305 initial value 114.371582 final value 94.466823 converged Fitting Repeat 1 # weights: 507 initial value 124.182610 final value 94.484211 converged Fitting Repeat 2 # weights: 507 initial value 122.151787 final value 94.466823 converged Fitting Repeat 3 # weights: 507 initial value 104.270756 final value 94.466823 converged Fitting Repeat 4 # weights: 507 initial value 116.639712 final value 94.466823 converged Fitting Repeat 5 # weights: 507 initial value 99.967763 final value 94.466823 converged Fitting Repeat 1 # weights: 103 initial value 99.771434 iter 10 value 95.858988 iter 20 value 94.490549 iter 30 value 93.076878 iter 40 value 86.724772 iter 50 value 85.896021 iter 60 value 85.656076 iter 70 value 85.329086 iter 80 value 85.174699 iter 90 value 85.124012 final value 85.123936 converged Fitting Repeat 2 # weights: 103 initial value 98.518583 iter 10 value 94.429314 iter 20 value 88.400950 iter 30 value 85.930627 iter 40 value 85.632923 iter 50 value 85.510476 iter 60 value 84.741130 iter 70 value 84.616169 iter 70 value 84.616168 iter 70 value 84.616168 final value 84.616168 converged Fitting Repeat 3 # weights: 103 initial value 98.614339 iter 10 value 94.374817 iter 20 value 90.224861 iter 30 value 87.175038 iter 40 value 86.789809 iter 50 value 86.147916 iter 60 value 86.028935 iter 70 value 85.910016 final value 85.909998 converged Fitting Repeat 4 # weights: 103 initial value 105.612336 iter 10 value 94.463368 iter 20 value 92.524976 iter 30 value 91.687629 iter 40 value 91.420199 iter 50 value 91.248645 iter 60 value 86.979134 iter 70 value 86.831204 iter 80 value 86.409759 iter 90 value 85.930544 iter 100 value 85.701772 final value 85.701772 stopped after 100 iterations Fitting Repeat 5 # weights: 103 initial value 101.248661 iter 10 value 94.484595 iter 20 value 94.481329 iter 30 value 88.444504 iter 40 value 88.212802 iter 50 value 87.684753 iter 60 value 87.478010 iter 70 value 87.257469 iter 80 value 87.092632 iter 90 value 86.535797 iter 100 value 85.799438 final value 85.799438 stopped after 100 iterations Fitting Repeat 1 # weights: 305 initial value 100.621913 iter 10 value 94.586238 iter 20 value 93.237677 iter 30 value 88.973114 iter 40 value 88.593564 iter 50 value 87.714086 iter 60 value 86.246021 iter 70 value 85.168010 iter 80 value 85.056721 iter 90 value 84.032681 iter 100 value 82.991815 final value 82.991815 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 101.569427 iter 10 value 94.081162 iter 20 value 87.766336 iter 30 value 87.390186 iter 40 value 86.067572 iter 50 value 84.667319 iter 60 value 83.584398 iter 70 value 82.598009 iter 80 value 82.035327 iter 90 value 81.905467 iter 100 value 81.853487 final value 81.853487 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 101.190621 iter 10 value 89.300677 iter 20 value 86.784068 iter 30 value 84.620797 iter 40 value 84.001664 iter 50 value 83.685608 iter 60 value 83.521272 iter 70 value 83.509912 iter 80 value 83.487190 iter 90 value 83.223614 iter 100 value 82.637693 final value 82.637693 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 101.658450 iter 10 value 94.488724 iter 20 value 92.566514 iter 30 value 86.250262 iter 40 value 85.989561 iter 50 value 85.200368 iter 60 value 85.059278 iter 70 value 84.721493 iter 80 value 83.839817 iter 90 value 83.193518 iter 100 value 82.686552 final value 82.686552 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 106.580532 iter 10 value 94.053177 iter 20 value 88.229343 iter 30 value 85.972061 iter 40 value 85.525772 iter 50 value 83.824841 iter 60 value 83.406798 iter 70 value 82.961065 iter 80 value 82.813466 iter 90 value 82.736777 iter 100 value 82.543992 final value 82.543992 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 105.324983 iter 10 value 94.556557 iter 20 value 94.468888 iter 30 value 94.143333 iter 40 value 87.295798 iter 50 value 85.999176 iter 60 value 85.387120 iter 70 value 84.275273 iter 80 value 83.194369 iter 90 value 82.747065 iter 100 value 82.408864 final value 82.408864 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 106.556732 iter 10 value 94.608628 iter 20 value 88.881312 iter 30 value 86.289347 iter 40 value 84.531356 iter 50 value 82.617045 iter 60 value 82.137027 iter 70 value 82.059377 iter 80 value 81.939455 iter 90 value 81.834432 iter 100 value 81.718841 final value 81.718841 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 109.450664 iter 10 value 94.771081 iter 20 value 94.508183 iter 30 value 86.331346 iter 40 value 85.753000 iter 50 value 85.318991 iter 60 value 84.636746 iter 70 value 83.189296 iter 80 value 82.831907 iter 90 value 82.329190 iter 100 value 82.176122 final value 82.176122 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 118.526133 iter 10 value 96.834844 iter 20 value 94.346452 iter 30 value 90.176000 iter 40 value 87.634444 iter 50 value 86.462505 iter 60 value 85.940649 iter 70 value 85.675997 iter 80 value 84.496374 iter 90 value 84.194109 iter 100 value 84.018666 final value 84.018666 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 122.967635 iter 10 value 96.063078 iter 20 value 93.581953 iter 30 value 89.036171 iter 40 value 84.662961 iter 50 value 83.219448 iter 60 value 82.975911 iter 70 value 82.687449 iter 80 value 82.491944 iter 90 value 82.334057 iter 100 value 82.168099 final value 82.168099 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 95.887060 final value 94.485723 converged Fitting Repeat 2 # weights: 103 initial value 97.097022 final value 94.485810 converged Fitting Repeat 3 # weights: 103 initial value 101.661232 iter 10 value 94.147361 iter 20 value 94.065117 iter 30 value 92.058050 iter 40 value 92.008415 iter 50 value 92.008270 final value 92.008232 converged Fitting Repeat 4 # weights: 103 initial value 95.098530 final value 94.485891 converged Fitting Repeat 5 # weights: 103 initial value 96.882692 final value 94.486311 converged Fitting Repeat 1 # weights: 305 initial value 110.044120 iter 10 value 94.488938 iter 20 value 94.408884 iter 30 value 93.619682 iter 40 value 89.602950 iter 50 value 88.085339 iter 60 value 87.850159 iter 70 value 87.655856 iter 80 value 85.827362 final value 85.524857 converged Fitting Repeat 2 # weights: 305 initial value 109.185444 iter 10 value 93.225542 iter 20 value 93.200779 iter 30 value 92.916884 iter 40 value 89.067819 iter 50 value 87.860664 iter 60 value 87.860499 iter 70 value 87.859718 iter 80 value 87.859489 iter 90 value 85.650038 final value 85.395666 converged Fitting Repeat 3 # weights: 305 initial value 98.036048 iter 10 value 94.488540 iter 20 value 94.381191 iter 30 value 87.209328 iter 40 value 85.618571 iter 50 value 85.617042 final value 85.616660 converged Fitting Repeat 4 # weights: 305 initial value 101.570672 iter 10 value 94.497889 iter 20 value 94.487608 iter 30 value 94.475219 iter 40 value 94.227937 iter 50 value 88.896825 iter 60 value 86.789510 iter 70 value 86.716330 iter 80 value 86.679308 iter 90 value 86.679210 iter 100 value 86.316110 final value 86.316110 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 95.444383 iter 10 value 94.471143 iter 20 value 94.466924 iter 30 value 93.716093 iter 40 value 92.637925 iter 50 value 86.095226 iter 60 value 85.402885 iter 70 value 85.303273 final value 85.299063 converged Fitting Repeat 1 # weights: 507 initial value 106.615798 iter 10 value 94.492287 iter 20 value 94.480590 iter 30 value 88.121680 iter 40 value 85.526664 iter 50 value 85.523866 iter 60 value 85.331090 iter 70 value 85.311487 iter 80 value 83.318607 iter 90 value 83.034914 iter 100 value 83.002656 final value 83.002656 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 95.513977 iter 10 value 94.491303 iter 20 value 93.549737 iter 30 value 91.945077 iter 40 value 91.941984 iter 50 value 91.940803 iter 60 value 91.940693 final value 91.940683 converged Fitting Repeat 3 # weights: 507 initial value 111.111386 iter 10 value 94.437072 iter 20 value 94.429779 iter 30 value 94.308139 iter 40 value 88.321120 iter 50 value 87.541927 iter 60 value 86.813017 iter 70 value 86.803275 iter 80 value 86.682352 iter 90 value 86.581447 iter 100 value 84.811043 final value 84.811043 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 110.183323 iter 10 value 93.695562 iter 20 value 93.691794 iter 30 value 93.686658 iter 40 value 93.485557 iter 50 value 93.449882 iter 60 value 89.276554 iter 70 value 87.885376 iter 80 value 87.805833 iter 90 value 87.803763 iter 100 value 87.634306 final value 87.634306 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 118.901273 iter 10 value 93.673094 iter 20 value 93.667508 iter 30 value 88.142854 iter 40 value 83.769718 iter 50 value 83.697753 iter 60 value 83.695275 iter 70 value 83.694860 iter 80 value 83.693765 iter 90 value 83.219205 iter 100 value 82.914135 final value 82.914135 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 106.315047 final value 94.052910 converged Fitting Repeat 2 # weights: 103 initial value 94.645626 final value 94.052910 converged Fitting Repeat 3 # weights: 103 initial value 99.111276 final value 94.052910 converged Fitting Repeat 4 # weights: 103 initial value 97.139037 final value 94.052910 converged Fitting Repeat 5 # weights: 103 initial value 105.327856 final value 94.052910 converged Fitting Repeat 1 # weights: 305 initial value 95.582788 final value 94.052910 converged Fitting Repeat 2 # weights: 305 initial value 97.492650 final value 92.945355 converged Fitting Repeat 3 # weights: 305 initial value 100.309626 iter 10 value 92.945358 final value 92.945355 converged Fitting Repeat 4 # weights: 305 initial value 126.623117 final value 94.052910 converged Fitting Repeat 5 # weights: 305 initial value 96.533943 iter 10 value 92.166176 final value 92.165543 converged Fitting Repeat 1 # weights: 507 initial value 99.115416 final value 94.052910 converged Fitting Repeat 2 # weights: 507 initial value 95.190216 iter 10 value 87.690835 iter 20 value 86.434681 iter 30 value 85.683057 iter 40 value 85.151070 iter 50 value 85.150021 final value 85.150013 converged Fitting Repeat 3 # weights: 507 initial value 99.669946 iter 10 value 88.383697 iter 20 value 83.637428 iter 30 value 81.228882 iter 40 value 79.646721 iter 50 value 79.388102 iter 60 value 79.387031 final value 79.387014 converged Fitting Repeat 4 # weights: 507 initial value 105.103366 iter 10 value 91.178831 iter 20 value 89.650947 iter 30 value 89.538229 final value 89.535184 converged Fitting Repeat 5 # weights: 507 initial value 109.382781 final value 94.052910 converged Fitting Repeat 1 # weights: 103 initial value 97.863641 iter 10 value 93.933774 iter 20 value 87.866492 iter 30 value 85.655925 iter 40 value 84.856489 iter 50 value 83.172357 iter 60 value 82.862309 iter 70 value 82.375780 iter 80 value 82.369060 final value 82.369043 converged Fitting Repeat 2 # weights: 103 initial value 101.742851 iter 10 value 94.032671 iter 20 value 91.856038 iter 30 value 89.003502 iter 40 value 86.657251 iter 50 value 86.307487 iter 60 value 84.130174 iter 70 value 83.987360 iter 80 value 82.776615 iter 90 value 82.513140 iter 100 value 82.462960 final value 82.462960 stopped after 100 iterations Fitting Repeat 3 # weights: 103 initial value 95.890043 iter 10 value 94.051727 iter 20 value 86.422469 iter 30 value 85.304713 iter 40 value 83.514624 iter 50 value 83.258406 iter 60 value 82.456317 final value 82.454494 converged Fitting Repeat 4 # weights: 103 initial value 112.727392 iter 10 value 94.024940 iter 20 value 91.949575 iter 30 value 90.160799 iter 40 value 89.914767 iter 50 value 89.222365 iter 60 value 84.241890 iter 70 value 81.583874 iter 80 value 81.130981 iter 90 value 80.664772 iter 100 value 80.557273 final value 80.557273 stopped after 100 iterations Fitting Repeat 5 # weights: 103 initial value 97.795496 iter 10 value 94.018325 iter 20 value 93.465796 iter 30 value 93.420146 iter 40 value 86.576269 iter 50 value 83.352337 iter 60 value 82.673278 iter 70 value 82.260099 iter 80 value 82.239225 iter 90 value 82.231672 iter 100 value 82.211846 final value 82.211846 stopped after 100 iterations Fitting Repeat 1 # weights: 305 initial value 112.734330 iter 10 value 93.688173 iter 20 value 86.792159 iter 30 value 85.038503 iter 40 value 84.813086 iter 50 value 84.651856 iter 60 value 83.450136 iter 70 value 81.569996 iter 80 value 80.403019 iter 90 value 80.208325 iter 100 value 80.134100 final value 80.134100 stopped after 100 iterations Fitting Repeat 2 # weights: 305 initial value 106.673742 iter 10 value 91.562239 iter 20 value 84.935996 iter 30 value 83.676489 iter 40 value 83.064175 iter 50 value 82.901016 iter 60 value 82.781787 iter 70 value 82.044130 iter 80 value 80.210887 iter 90 value 79.874385 iter 100 value 79.754451 final value 79.754451 stopped after 100 iterations Fitting Repeat 3 # weights: 305 initial value 105.471498 iter 10 value 93.870074 iter 20 value 86.987986 iter 30 value 83.812395 iter 40 value 83.516565 iter 50 value 82.971433 iter 60 value 82.345305 iter 70 value 80.927127 iter 80 value 80.456726 iter 90 value 79.913502 iter 100 value 79.732928 final value 79.732928 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 116.750106 iter 10 value 94.032982 iter 20 value 91.812516 iter 30 value 89.430920 iter 40 value 87.893770 iter 50 value 83.341344 iter 60 value 81.673679 iter 70 value 81.235850 iter 80 value 80.806558 iter 90 value 80.381214 iter 100 value 80.168512 final value 80.168512 stopped after 100 iterations Fitting Repeat 5 # weights: 305 initial value 111.369014 iter 10 value 93.951235 iter 20 value 92.720851 iter 30 value 92.556009 iter 40 value 92.493811 iter 50 value 92.443450 iter 60 value 87.322365 iter 70 value 83.730222 iter 80 value 82.374724 iter 90 value 79.905206 iter 100 value 79.441424 final value 79.441424 stopped after 100 iterations Fitting Repeat 1 # weights: 507 initial value 123.240345 iter 10 value 93.858919 iter 20 value 89.187728 iter 30 value 85.296795 iter 40 value 81.596982 iter 50 value 80.285789 iter 60 value 79.626737 iter 70 value 79.127925 iter 80 value 78.848185 iter 90 value 78.661913 iter 100 value 78.585719 final value 78.585719 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 105.423605 iter 10 value 94.196933 iter 20 value 85.759061 iter 30 value 84.383519 iter 40 value 82.991964 iter 50 value 82.019395 iter 60 value 80.726176 iter 70 value 79.911128 iter 80 value 79.706722 iter 90 value 79.478036 iter 100 value 79.403359 final value 79.403359 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 116.396548 iter 10 value 92.364384 iter 20 value 86.164573 iter 30 value 84.449782 iter 40 value 83.823208 iter 50 value 82.813486 iter 60 value 82.139562 iter 70 value 81.674204 iter 80 value 81.416123 iter 90 value 80.441596 iter 100 value 80.207217 final value 80.207217 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 109.407973 iter 10 value 94.110492 iter 20 value 92.844615 iter 30 value 84.193506 iter 40 value 82.734692 iter 50 value 82.150107 iter 60 value 80.710023 iter 70 value 80.335125 iter 80 value 79.686652 iter 90 value 79.317515 iter 100 value 79.092258 final value 79.092258 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 114.545230 iter 10 value 92.880438 iter 20 value 87.189833 iter 30 value 82.048309 iter 40 value 81.530958 iter 50 value 80.564357 iter 60 value 80.157989 iter 70 value 79.568141 iter 80 value 79.482672 iter 90 value 79.455035 iter 100 value 79.438234 final value 79.438234 stopped after 100 iterations Fitting Repeat 1 # weights: 103 initial value 99.325295 iter 10 value 94.054524 iter 20 value 94.051212 iter 30 value 93.053540 iter 40 value 93.001085 iter 50 value 92.981456 iter 60 value 92.974980 iter 70 value 92.972169 iter 80 value 92.952558 iter 90 value 92.948550 iter 100 value 92.948334 final value 92.948334 stopped after 100 iterations Fitting Repeat 2 # weights: 103 initial value 94.741649 final value 94.054670 converged Fitting Repeat 3 # weights: 103 initial value 95.182678 final value 94.055265 converged Fitting Repeat 4 # weights: 103 initial value 98.937484 final value 94.054478 converged Fitting Repeat 5 # weights: 103 initial value 95.552375 iter 10 value 92.947940 iter 20 value 92.947613 iter 30 value 92.609353 iter 40 value 82.535684 iter 50 value 82.160887 iter 60 value 81.642454 iter 70 value 81.246119 iter 70 value 81.246119 final value 81.246119 converged Fitting Repeat 1 # weights: 305 initial value 97.572625 iter 10 value 92.950935 iter 20 value 92.950179 iter 30 value 91.488373 iter 40 value 83.959730 final value 83.957959 converged Fitting Repeat 2 # weights: 305 initial value 113.301592 iter 10 value 94.057745 iter 20 value 94.052891 iter 30 value 93.485201 iter 40 value 91.951729 iter 50 value 91.610324 iter 60 value 91.608845 iter 60 value 91.608844 iter 60 value 91.608844 final value 91.608844 converged Fitting Repeat 3 # weights: 305 initial value 96.892803 iter 10 value 94.057439 iter 20 value 94.021768 iter 30 value 94.017648 iter 40 value 84.790396 iter 50 value 83.208239 iter 60 value 83.146930 iter 70 value 82.799267 iter 80 value 81.292706 iter 90 value 79.442142 iter 100 value 79.357430 final value 79.357430 stopped after 100 iterations Fitting Repeat 4 # weights: 305 initial value 111.151996 iter 10 value 90.271205 iter 20 value 86.694972 iter 30 value 86.617134 iter 40 value 86.615474 final value 86.615438 converged Fitting Repeat 5 # weights: 305 initial value 123.359874 iter 10 value 94.059176 iter 20 value 94.056367 iter 30 value 94.054256 iter 40 value 93.586645 iter 50 value 92.678656 iter 60 value 83.584219 iter 70 value 82.584346 iter 80 value 82.328695 final value 82.327353 converged Fitting Repeat 1 # weights: 507 initial value 99.696508 iter 10 value 88.839763 iter 20 value 86.087434 iter 30 value 83.990457 iter 40 value 83.500623 iter 50 value 83.020303 iter 60 value 82.703712 iter 70 value 79.409181 iter 80 value 78.773602 iter 90 value 78.597385 iter 100 value 78.567147 final value 78.567147 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 106.494092 iter 10 value 94.061236 iter 20 value 94.044430 iter 30 value 92.473363 iter 40 value 84.259674 iter 50 value 83.684347 iter 60 value 83.022214 iter 70 value 82.459317 iter 80 value 81.802417 iter 90 value 81.781337 final value 81.780912 converged Fitting Repeat 3 # weights: 507 initial value 111.196614 iter 10 value 94.061424 iter 20 value 94.053056 iter 30 value 93.395589 final value 92.172755 converged Fitting Repeat 4 # weights: 507 initial value 113.010278 iter 10 value 92.954025 iter 20 value 92.950220 iter 30 value 92.477085 iter 40 value 89.028429 iter 50 value 88.951543 iter 60 value 88.947725 iter 70 value 88.947349 iter 80 value 88.946286 iter 90 value 87.203340 iter 100 value 85.805414 final value 85.805414 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 97.002261 iter 10 value 93.162444 iter 20 value 92.684578 iter 30 value 84.969759 iter 40 value 84.130602 iter 50 value 84.126889 final value 84.126880 converged Fitting Repeat 1 # weights: 507 initial value 138.198650 iter 10 value 118.017730 iter 20 value 108.708093 iter 30 value 105.048658 iter 40 value 104.715105 iter 50 value 104.454710 iter 60 value 102.763545 iter 70 value 102.065959 iter 80 value 101.739342 iter 90 value 101.064441 iter 100 value 100.934822 final value 100.934822 stopped after 100 iterations Fitting Repeat 2 # weights: 507 initial value 133.398903 iter 10 value 118.126362 iter 20 value 113.443397 iter 30 value 105.863201 iter 40 value 105.188111 iter 50 value 104.852699 iter 60 value 104.756108 iter 70 value 104.650520 iter 80 value 103.866527 iter 90 value 103.377055 iter 100 value 102.574650 final value 102.574650 stopped after 100 iterations Fitting Repeat 3 # weights: 507 initial value 150.871947 iter 10 value 119.148645 iter 20 value 117.568567 iter 30 value 110.029827 iter 40 value 107.162356 iter 50 value 106.622036 iter 60 value 105.103811 iter 70 value 103.563250 iter 80 value 101.959451 iter 90 value 100.680768 iter 100 value 100.450123 final value 100.450123 stopped after 100 iterations Fitting Repeat 4 # weights: 507 initial value 140.547439 iter 10 value 118.165863 iter 20 value 109.985638 iter 30 value 108.394457 iter 40 value 107.065878 iter 50 value 105.875163 iter 60 value 105.644671 iter 70 value 104.074281 iter 80 value 103.609298 iter 90 value 103.457366 iter 100 value 103.325507 final value 103.325507 stopped after 100 iterations Fitting Repeat 5 # weights: 507 initial value 146.723204 iter 10 value 117.862343 iter 20 value 116.360947 iter 30 value 114.232753 iter 40 value 111.345406 iter 50 value 105.439305 iter 60 value 104.966495 iter 70 value 104.381579 iter 80 value 103.813419 iter 90 value 103.292841 iter 100 value 102.275511 final value 102.275511 stopped after 100 iterations svmRadial ranger Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls < cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases Setting levels: control = Positive, case = Negative Setting direction: controls > cases RUNIT TEST PROTOCOL -- Wed Jun 5 21:04:24 2024 *********************************************** Number of test functions: 7 Number of errors: 0 Number of failures: 0 1 Test Suite : HPiP RUnit Tests - 7 test functions, 0 errors, 0 failures Number of test functions: 7 Number of errors: 0 Number of failures: 0 Warning messages: 1: `repeats` has no meaning for this resampling method. 2: executing %dopar% sequentially: no parallel backend registered > > > > > proc.time() user system elapsed 44.294 1.787 44.196
HPiP.Rcheck/HPiP-Ex.timings
name | user | system | elapsed | |
FSmethod | 33.754 | 1.714 | 35.594 | |
FreqInteractors | 0.252 | 0.014 | 0.268 | |
calculateAAC | 0.032 | 0.008 | 0.040 | |
calculateAutocor | 0.598 | 0.088 | 0.690 | |
calculateCTDC | 0.067 | 0.005 | 0.073 | |
calculateCTDD | 0.645 | 0.028 | 0.675 | |
calculateCTDT | 0.232 | 0.009 | 0.243 | |
calculateCTriad | 0.402 | 0.042 | 0.447 | |
calculateDC | 0.114 | 0.015 | 0.129 | |
calculateF | 0.383 | 0.017 | 0.402 | |
calculateKSAAP | 0.118 | 0.011 | 0.129 | |
calculateQD_Sm | 1.483 | 0.104 | 1.589 | |
calculateTC | 1.783 | 0.182 | 1.975 | |
calculateTC_Sm | 0.350 | 0.048 | 0.399 | |
corr_plot | 33.885 | 1.678 | 35.685 | |
enrichfindP | 0.495 | 0.066 | 8.623 | |
enrichfind_hp | 0.076 | 0.022 | 1.394 | |
enrichplot | 0.420 | 0.009 | 0.431 | |
filter_missing_values | 0.001 | 0.001 | 0.002 | |
getFASTA | 0.071 | 0.010 | 3.498 | |
getHPI | 0.000 | 0.000 | 0.001 | |
get_negativePPI | 0.002 | 0.000 | 0.002 | |
get_positivePPI | 0 | 0 | 0 | |
impute_missing_data | 0.002 | 0.001 | 0.002 | |
plotPPI | 0.082 | 0.003 | 0.085 | |
pred_ensembel | 13.811 | 0.552 | 10.227 | |
var_imp | 36.623 | 1.925 | 38.968 | |