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INSTALL report for VanillaICE on tokay2

This page was generated on 2019-04-09 11:55:56 -0400 (Tue, 09 Apr 2019).

Package 1667/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
VanillaICE 1.45.0
Robert Scharpf
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/VanillaICE
Branch: master
Last Commit: c05bd5c
Last Changed Date: 2018-10-30 11:54:27 -0400 (Tue, 30 Oct 2018)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  ERROR  ERROR  skipped 
tokay2 Windows Server 2012 R2 Standard / x64 [ ERROR ] ERROR  skipped  skipped 
celaya2 OS X 10.11.6 El Capitan / x86_64  ERROR  ERROR  skipped  skipped 
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK 

Summary

Package: VanillaICE
Version: 1.45.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/VanillaICE_1.45.0.tar.gz && rm -rf VanillaICE.buildbin-libdir && mkdir VanillaICE.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=VanillaICE.buildbin-libdir VanillaICE_1.45.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL VanillaICE_1.45.0.zip && rm VanillaICE_1.45.0.tar.gz VanillaICE_1.45.0.zip
StartedAt: 2019-04-08 20:22:05 -0400 (Mon, 08 Apr 2019)
EndedAt: 2019-04-08 20:22:16 -0400 (Mon, 08 Apr 2019)
EllapsedTime: 11.7 seconds
RetCode: 1
Status:  ERROR  

Command output

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### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.9/bioc/src/contrib/VanillaICE_1.45.0.tar.gz && rm -rf VanillaICE.buildbin-libdir && mkdir VanillaICE.buildbin-libdir && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=VanillaICE.buildbin-libdir VanillaICE_1.45.0.tar.gz && C:\Users\biocbuild\bbs-3.9-bioc\R\bin\R.exe CMD INSTALL VanillaICE_1.45.0.zip && rm VanillaICE_1.45.0.tar.gz VanillaICE_1.45.0.zip
###
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100 1095k  100 1095k    0     0  15.4M      0 --:--:-- --:--:-- --:--:-- 16.9M

install for i386

* installing *source* package 'VanillaICE' ...
** libs
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c rinit.c -o rinit.o
C:/Rtools/mingw_32/bin/gcc  -I"C:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O3 -Wall  -std=gnu99 -mtune=generic -c viterbi.c -o viterbi.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o VanillaICE.dll tmp.def rinit.o viterbi.o -lm -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.9-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.9-bioc/meat/VanillaICE.buildbin-libdir/00LOCK-VanillaICE/00new/VanillaICE/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Error in reconcilePropertiesAndPrototype(name, slots, prototype, superClasses,  : 
  The prototype for class "SnpDataFrame" has undefined slot(s): 'isSnp'
Error: unable to load R code in package 'VanillaICE'
Execution halted
ERROR: lazy loading failed for package 'VanillaICE'
* removing 'C:/Users/biocbuild/bbs-3.9-bioc/meat/VanillaICE.buildbin-libdir/VanillaICE'