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BUILD report for VanillaICE on malbec2

This page was generated on 2019-04-09 11:25:58 -0400 (Tue, 09 Apr 2019).

Package 1667/1703HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
VanillaICE 1.45.0
Robert Scharpf
Snapshot Date: 2019-04-08 17:01:18 -0400 (Mon, 08 Apr 2019)
URL: https://git.bioconductor.org/packages/VanillaICE
Branch: master
Last Commit: c05bd5c
Last Changed Date: 2018-10-30 11:54:27 -0400 (Tue, 30 Oct 2018)
malbec2 Linux (Ubuntu 18.04.2 LTS) / x86_64  ERROR [ ERROR ] skipped 
tokay2 Windows Server 2012 R2 Standard / x64  ERROR  ERROR  skipped  skipped 
celaya2 OS X 10.11.6 El Capitan / x86_64  ERROR  ERROR  skipped  skipped 
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK 

Summary

Package: VanillaICE
Version: 1.45.0
Command: /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data VanillaICE
StartedAt: 2019-04-08 19:12:13 -0400 (Mon, 08 Apr 2019)
EndedAt: 2019-04-08 19:12:30 -0400 (Mon, 08 Apr 2019)
EllapsedTime: 17.2 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.9-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data VanillaICE
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* checking for file ‘VanillaICE/DESCRIPTION’ ... OK
* preparing ‘VanillaICE’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
      -----------------------------------
* installing *source* package ‘VanillaICE’ ...
** using staged installation
** libs
gcc -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG   -I/usr/local/include  -fpic  -g -O2  -Wall -c rinit.c -o rinit.o
gcc -I"/home/biocbuild/bbs-3.9-bioc/R/include" -DNDEBUG   -I/usr/local/include  -fpic  -g -O2  -Wall -c viterbi.c -o viterbi.o
gcc -shared -L/home/biocbuild/bbs-3.9-bioc/R/lib -L/usr/local/lib -o VanillaICE.so rinit.o viterbi.o -lm -L/home/biocbuild/bbs-3.9-bioc/R/lib -lR
installing to /tmp/Rtmp1mkn4D/Rinst4c59323f9da5/00LOCK-VanillaICE/00new/VanillaICE/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Error in reconcilePropertiesAndPrototype(name, slots, prototype, superClasses,  : 
  The prototype for class “SnpDataFrame” has undefined slot(s): 'isSnp'
Error: unable to load R code in package ‘VanillaICE’
Execution halted
ERROR: lazy loading failed for package ‘VanillaICE’
* removing ‘/tmp/Rtmp1mkn4D/Rinst4c59323f9da5/VanillaICE’
      -----------------------------------
ERROR: package installation failed