Package: RedeR

Version: 1.26.0

Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings RedeR_1.26.0.tar.gz

StartedAt: 2018-04-12 08:29:38 -0400 (Thu, 12 Apr 2018)

EndedAt: 2018-04-12 08:30:21 -0400 (Thu, 12 Apr 2018)

EllapsedTime: 42.9 seconds

RetCode: 0

Status:  OK

CheckDir: RedeR.Rcheck

Warnings: 0

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD check --no-vignettes --timings RedeR_1.26.0.tar.gz
###
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* using log directory ‘/Users/biocbuild/bbs-3.6-bioc/meat/RedeR.Rcheck’
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-apple-darwin15.6.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘RedeR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘RedeR’ version ‘1.26.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘RedeR’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 10.0Mb
  sub-directories of 1Mb or more:
    data   3.3Mb
    doc    2.0Mb
    java   4.3Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/Users/biocbuild/bbs-3.6-bioc/meat/RedeR.Rcheck/00check.log’
for details.

* installing *source* package ‘RedeR’ ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (RedeR)

name	user	system	elapsed
RedPort-class	0.003	0.000	0.003
RedPort	0.001	0.000	0.001
RedeR.data	0.443	0.019	0.470
addEdgeBetweenContainers	0.014	0.001	0.014
addEdges	0.010	0.001	0.011
addGraph	0.011	0.001	0.012
addLegend	0.014	0.001	0.020
addNodes	0.008	0.000	0.009
addSeries	0.011	0.000	0.011
addSubgraph	0.008	0.001	0.010
addSubgraph.list	0.010	0.001	0.011
att	0.471	0.010	0.492
calld	0.002	0.000	0.002
cea	0.015	0.002	0.016
deSelectEdges	0.010	0.001	0.013
deSelectGraph	0.010	0.001	0.011
deSelectNodes	0.009	0.001	0.010
deleteEdges	0.010	0.001	0.011
deleteNodes	0.010	0.001	0.011
deleteSelectedEdges	0.009	0.001	0.010
deleteSelectedNodes	0.011	0.001	0.012
duplicateGraph	0.009	0.001	0.010
exitd	0	0	0
getContainerComponets	0.010	0.001	0.011
getEdgeIDs	0.009	0.001	0.010
getEdges	0.008	0.001	0.008
getGraph	0.013	0.000	0.014
getNodeIDs	0.011	0.000	0.012
getNodes	0.010	0.000	0.011
getSourceEdgeIDs	0.011	0.000	0.010
getTargetEdgeIDs	0.011	0.001	0.011
gtoy.rm	0.001	0.000	0.000
isDynamicsActive	0.001	0.000	0.001
mergeNodes	0.010	0.001	0.011
mergeOutEdges	0.011	0.001	0.015
nestNodes	0.010	0.001	0.011
nesthc	1.308	0.030	1.365
ping	0.001	0.001	0.002
relax	0.010	0.000	0.012
resetd	0.001	0.000	0.001
selectAllEdges	0.011	0.001	0.012
selectAllNodes	0.009	0.000	0.009
selectEdges	0.011	0.000	0.012
selectGraph	0.010	0.000	0.011
selectNodes	0.009	0.000	0.009
setArrowDirection	0.014	0.000	0.015
subg	0.050	0.004	0.054
updateContainerSize	0.010	0.001	0.010
updateGraph	0.010	0.001	0.010
version	0.001	0.000	0.001