Bioconductor version: Release (3.6)
RedeR is an R-based package combined with a stand-alone Java application for interactive visualization and manipulation of modular structures, nested networks and multiple levels of hierarchical associations.
Author: Mauro Castro, Xin Wang, Florian Markowetz
Maintainer: Mauro Castro <mauro.a.castro at gmail.com>
Citation (from within R,
enter citation("RedeR")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("RedeR")
HTML | R Script | RedeR: hierarchical network representation |
Reference Manual | ||
Text | NEWS |
biocViews | DataRepresentation, GraphAndNetwork, Infrastructure, Network, Software, Visualization |
Version | 1.26.0 |
In Bioconductor since | BioC 2.9 (R-2.14) (6.5 years) |
License | GPL (>= 2) |
Depends | R (>= 3.3.3), methods |
Imports | igraph |
LinkingTo | |
Suggests | pvclust, BiocStyle, knitr, rmarkdown |
SystemRequirements | Java Runtime Environment (>= 6) |
Enhances | |
URL | http://genomebiology.com/2012/13/4/R29 |
Depends On Me | Fletcher2013b |
Imports Me | Mulder2012, PANR, RTN, transcriptogramer |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | RedeR_1.26.0.tar.gz |
Windows Binary | RedeR_1.26.0.zip |
Mac OS X 10.11 (El Capitan) | RedeR_1.26.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/RedeR |
Package Short Url | http://bioconductor.org/packages/RedeR/ |
Package Downloads Report | Download Stats |
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