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BioC 2.14: INSTALL report for h5vc on zin2

This page was generated on 2014-10-08 08:50:18 -0700 (Wed, 08 Oct 2014).

Package 378/824HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
h5vc 1.4.0
Paul Theodor Pyl
Snapshot Date: 2014-10-07 17:20:37 -0700 (Tue, 07 Oct 2014)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_14/madman/Rpacks/h5vc
Last Changed Rev: 91797 / Revision: 95116
Last Changed Date: 2014-06-24 07:41:53 -0700 (Tue, 24 Jun 2014)
zin2 Linux (Ubuntu 12.04.4 LTS) / x86_64 [ OK ] OK  OK 
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.8) / x86_64  OK  OK  OK  OK 
morelia Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK 

Summary

Package: h5vc
Version: 1.4.0
Command: /home/biocbuild/bbs-2.14-bioc/R/bin/R CMD INSTALL h5vc
StartedAt: 2014-10-07 18:09:04 -0700 (Tue, 07 Oct 2014)
EndedAt: 2014-10-07 18:09:18 -0700 (Tue, 07 Oct 2014)
EllapsedTime: 14.7 seconds
RetCode: 0
Status:  OK 

Command output

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-2.14-bioc/R/bin/R CMD INSTALL h5vc
###
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* installing to library ‘/home/biocbuild/bbs-2.14-bioc/R/library’
* installing *source* package ‘h5vc’ ...
** libs
Found /home/biocbuild/bbs-2.14-bioc/R/library/Rsamtools/usretc//Rsamtools.mk.
g++ -I/home/biocbuild/bbs-2.14-bioc/R/include -DNDEBUG -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -I/home/biocbuild/bbs-2.14-bioc/R/library/Rsamtools/include -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/local/include    -fpic  -g -O2  -Wall -c tallyBAM.cpp -o tallyBAM.o
tallyBAM.cpp: In function ‘int pileup_func(uint32_t, uint32_t, int, const bam_pileup1_t*, void*)’:
tallyBAM.cpp:46:7: warning: unused variable ‘len’ [-Wunused-variable]
tallyBAM.cpp: In function ‘int _tallyBAM(char**, char**, int*, int*, int*, int*, int*, int*, int*, int*)’:
tallyBAM.cpp:81:6: warning: unused variable ‘c’ [-Wunused-variable]
g++ -shared -L/usr/local/lib -o h5vc.so tallyBAM.o /home/biocbuild/bbs-2.14-bioc/R/library/Rsamtools/usrlib//libbam.a /home/biocbuild/bbs-2.14-bioc/R/library/Rsamtools/usrlib//libbcf.a /home/biocbuild/bbs-2.14-bioc/R/library/Rsamtools/usrlib//libtabix.a -lz -pthread -L/home/biocbuild/bbs-2.14-bioc/R/lib -lR
installing to /home/biocbuild/bbs-2.14-bioc/R/library/h5vc/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
   ‘h5vc.simple.genome.browser.Rmd’ 
   ‘h5vc.tour.Rmd’ 
** testing if installed package can be loaded
* DONE (h5vc)