h5vc 1.4.0
Paul Theodor Pyl
| Snapshot Date: 2014-10-07 17:20:37 -0700 (Tue, 07 Oct 2014) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_14/madman/Rpacks/h5vc | | Last Changed Rev: 91797 / Revision: 95116 | | Last Changed Date: 2014-06-24 07:41:53 -0700 (Tue, 24 Jun 2014) |
| zin2 | Linux (Ubuntu 12.04.4 LTS) / x86_64 | OK | OK | OK | |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | OK | OK | OK | OK |
| petty | Mac OS X Snow Leopard (10.6.8) / x86_64 | OK | OK | OK | OK |
| morelia | Mac OS X Mavericks (10.9.5) / x86_64 | [ OK ] | OK | OK | OK |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL h5vc
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* installing to library ‘/Library/Frameworks/R.framework/Versions/3.1/Resources/library’
* installing *source* package ‘h5vc’ ...
** libs
Found /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rsamtools/usretc//Rsamtools.mk.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -I/Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rsamtools/include -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include -fPIC -Wall -mtune=core2 -g -O2 -c tallyBAM.cpp -o tallyBAM.o
tallyBAM.cpp:46:7: warning: unused variable 'len' [-Wunused-variable]
int len = nttable->end - nttable->beg;
^
tallyBAM.cpp:56:18: warning: variable 'c' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized]
}else if(p->indel < 0){
^˜˜˜˜˜˜˜˜˜˜˜
tallyBAM.cpp:60:16: note: uninitialized use occurs here
str += c;
^
tallyBAM.cpp:56:15: note: remove the 'if' if its condition is always true
}else if(p->indel < 0){
^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
tallyBAM.cpp:53:15: note: initialize the variable 'c' to silence this warning
char c;
^
= '\0'
tallyBAM.cpp:81:6: warning: unused variable 'c' [-Wunused-variable]
int c = 0;
^
3 warnings generated.
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o h5vc.so tallyBAM.o /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rsamtools/usrlib//libbam.a /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rsamtools/usrlib//libbcf.a /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rsamtools/usrlib//libtabix.a -lz -pthread -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
clang: warning: argument unused during compilation: '-pthread'
installing to /Library/Frameworks/R.framework/Versions/3.1/Resources/library/h5vc/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
‘h5vc.simple.genome.browser.Rmd’
‘h5vc.tour.Rmd’
** testing if installed package can be loaded
* DONE (h5vc)