BioC 2.14: BUILD BIN report for h5vc on morelia

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### Running command:
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###   rm -rf h5vc.buildbin-libdir && mkdir h5vc.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh h5vc_1.4.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R h5vc.buildbin-libdir
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=h5vc.buildbin-libdir h5vc_1.4.0.tar.gz'
>>>>>>> 

* installing *source* package ‘h5vc’ ...
** libs
Found /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rsamtools/usretc//Rsamtools.mk.
Found /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rsamtools/usretc//Rsamtools.mk.
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -I/Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rsamtools/include -D_USE_KNETFILE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c tallyBAM.cpp -o tallyBAM.o
tallyBAM.cpp:46:7: warning: unused variable 'len' [-Wunused-variable]
  int len = nttable->end - nttable->beg;
      ^
tallyBAM.cpp:56:18: warning: variable 'c' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized]
        }else if(p->indel < 0){
                 ^˜˜˜˜˜˜˜˜˜˜˜
tallyBAM.cpp:60:16: note: uninitialized use occurs here
        str += c;
               ^
tallyBAM.cpp:56:15: note: remove the 'if' if its condition is always true
        }else if(p->indel < 0){
              ^˜˜˜˜˜˜˜˜˜˜˜˜˜˜˜
tallyBAM.cpp:53:15: note: initialize the variable 'c' to silence this warning
        char c;
              ^
               = '\0'
tallyBAM.cpp:81:6: warning: unused variable 'c' [-Wunused-variable]
        int c = 0;
            ^
3 warnings generated.
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o h5vc.so tallyBAM.o /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rsamtools/usrlib//libbam.a /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rsamtools/usrlib//libbcf.a /Library/Frameworks/R.framework/Versions/3.1/Resources/library/Rsamtools/usrlib//libtabix.a -lz -pthread -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
clang: warning: argument unused during compilation: '-pthread'
installing to /Users/biocbuild/bbs-2.14-bioc/meat/h5vc.buildbin-libdir/h5vc/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (h5vc)


>>>>>>> 
>>>>>>> FIXING LINKS FOR h5vc.buildbin-libdir/h5vc/libs//h5vc.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libgcc_s.1.dylib" "h5vc.buildbin-libdir/h5vc/libs//h5vc.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libgfortran.3.dylib" "h5vc.buildbin-libdir/h5vc/libs//h5vc.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libreadline.5.2.dylib" "h5vc.buildbin-libdir/h5vc/libs//h5vc.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libreadline.dylib" "h5vc.buildbin-libdir/h5vc/libs//h5vc.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.1/Resources/lib/libquadmath.0.dylib" "h5vc.buildbin-libdir/h5vc/libs//h5vc.so"
BioC 2.14: BUILD BIN report for h5vc on morelia

Summary

Command output
