Bioconductor version: Release (3.6)
These recipes convert a wide variety and a growing number of public bioinformatic data sets into easily-used standard Bioconductor data structures.
Author: Martin Morgan [ctb], Marc Carlson [ctb], Dan Tenenbaum [ctb], Sonali Arora [ctb], Paul Shannon [ctb], Bioconductor Package Maintainer [cre]
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
Citation (from within R,
enter citation("AnnotationHubData")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("AnnotationHubData")
HTML | Introduction to AnnotationHubData | |
Reference Manual | ||
Text | NEWS |
biocViews | DataImport, Software |
Version | 1.8.1 |
In Bioconductor since | BioC 3.2 (R-3.2) (2.5 years) |
License | Artistic-2.0 |
Depends | R (>= 3.2.2), methods, utils, S4Vectors(>= 0.7.21), IRanges(>= 2.3.23), GenomicRanges, AnnotationHub(>= 2.9.14) |
Imports | GenomicFeatures, Rsamtools, rtracklayer, BiocGenerics, jsonlite, BiocInstaller, biocViews, AnnotationDbi, Biobase, Biostrings, DBI, GEOquery, GenomeInfoDb, OrganismDbi, RSQLite, rBiopaxParser, AnnotationForge, futile.logger (>= 1.3.0), XML, RCurl |
LinkingTo | |
Suggests | RUnit, knitr, BiocStyle, grasp2db, BiocInstaller |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | ExperimentHubData, ProteomicsAnnotationHubData |
Imports Me | AHEnsDbs |
Suggests Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | AnnotationHubData_1.8.1.tar.gz |
Windows Binary | AnnotationHubData_1.8.1.zip |
Mac OS X 10.11 (El Capitan) | AnnotationHubData_1.8.1.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/AnnotationHubData |
Package Short Url | http://bioconductor.org/packages/AnnotationHubData/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.6 | Source Archive |
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