Bioconductor version: Release (3.6)
The package enables a simple unified interface to several annotation packages each of which has its own schema by taking advantage of the fact that each of these packages implements a select methods.
Author: Marc Carlson, Herve Pages, Martin Morgan, Valerie Obenchain
Maintainer: Biocore Data Team <maintainer at bioconductor.org>
Citation (from within R,
enter citation("OrganismDbi")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("OrganismDbi")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("OrganismDbi")
R Script | OrganismDbi: A meta framework for Annotation Packages | |
Reference Manual | ||
Text | NEWS |
biocViews | Annotation, Infrastructure, Software |
Version | 1.20.0 |
In Bioconductor since | BioC 2.11 (R-2.15) (5.5 years) |
License | Artistic-2.0 |
Depends | R (>= 2.14.0), methods, BiocGenerics(>= 0.15.10), AnnotationDbi(>= 1.33.15), GenomicFeatures(>= 1.23.31) |
Imports | Biobase, BiocInstaller, GenomicRanges, graph, IRanges, RBGL, DBI, S4Vectors(>= 0.9.25), stats |
LinkingTo | |
Suggests | Homo.sapiens, Rattus.norvegicus, BSgenome.Hsapiens.UCSC.hg19, AnnotationHub, FDb.UCSC.tRNAs, rtracklayer, biomaRt, RUnit |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | Homo.sapiens, Mus.musculus, Rattus.norvegicus |
Imports Me | AnnotationHubData, epivizrData, ggbio |
Suggests Me | ChIPpeakAnno, epivizrStandalone |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | OrganismDbi_1.20.0.tar.gz |
Windows Binary | OrganismDbi_1.20.0.zip |
Mac OS X 10.11 (El Capitan) | OrganismDbi_1.20.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/OrganismDbi |
Package Short Url | http://bioconductor.org/packages/OrganismDbi/ |
Package Downloads Report | Download Stats |
Documentation »
Bioconductor
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations: