To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("MotifDb")
In most cases, you don't need to download the package archive at all.
Bioconductor version: Release (3.4)
More than 2000 annotated position frequency matrices from nine public sources, for multiple organisms.
Author: Paul Shannon
Maintainer: Paul Shannon <pshannon at systemsbiology.org>
Citation (from within R,
enter citation("MotifDb")
):
To install this package, start R and enter:
## try http:// if https:// URLs are not supported source("https://bioconductor.org/biocLite.R") biocLite("MotifDb")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MotifDb")
R Script | %%MotifDb Overview | |
Reference Manual | ||
Text | NEWS | |
Text | LICENSE |
biocViews | MotifAnnotation, Software |
Version | 1.16.1 |
In Bioconductor since | BioC 2.11 (R-2.15) (4.5 years) |
License | Artistic-2.0 | file LICENSE |
Depends | R (>= 2.15.0), methods, BiocGenerics, S4Vectors, IRanges, Biostrings |
Imports | rtracklayer |
LinkingTo | |
Suggests | RUnit, seqLogo, MotIV |
SystemRequirements | |
Enhances | |
URL | |
Depends On Me | motifbreakR |
Imports Me | rTRMui |
Suggests Me | DiffLogo, MMDiff2, motifStack, profileScoreDist, PWMEnrich, rTRM, vtpnet |
Build Report |
Follow Installation instructions to use this package in your R session.
Package Source | MotifDb_1.16.1.tar.gz |
Windows Binary | MotifDb_1.16.1.zip |
Mac OS X 10.9 (Mavericks) | MotifDb_1.16.1.tgz |
Subversion source | (username/password: readonly) |
Git source | https://github.com/Bioconductor-mirror/MotifDb/tree/release-3.4 |
Package Short Url | http://bioconductor.org/packages/MotifDb/ |
Package Downloads Report | Download Stats |
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