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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("seqLogo")
In most cases, you don't need to download the package archive at all.
seqLogo
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Sequence logos for DNA sequence alignments
Bioconductor version: Release (3.4)
seqLogo takes the position weight matrix of a DNA sequence motif and plots the corresponding sequence logo as introduced by Schneider and Stephens (1990).
Author: Oliver Bembom
Maintainer: Oliver Bembom <oliver.bembom at gmail.com>
Citation (from within R,
enter citation("seqLogo")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("seqLogo")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("seqLogo")
| R Script | Sequence logos for DNA sequence alignments | |
| Reference Manual |
Details
| biocViews | SequenceMatching, Software |
| Version | 1.40.0 |
| In Bioconductor since | BioC 2.0 (R-2.5) (10 years) |
| License | LGPL (>= 2) |
| Depends | methods, grid |
| Imports | stats4 |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | motifRG, rGADEM |
| Imports Me | motifRG, PWMEnrich, rGADEM, spliceSites, SPLINTER, TFBSTools |
| Suggests Me | BCRANK, DiffLogo, MotifDb |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | seqLogo_1.40.0.tar.gz |
| Windows Binary | seqLogo_1.40.0.zip |
| Mac OS X 10.9 (Mavericks) | seqLogo_1.40.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/seqLogo/tree/release-3.4 |
| Package Short Url | http://bioconductor.org/packages/seqLogo/ |
| Package Downloads Report | Download Stats |
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