This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see AnnotationFilter.
Bioconductor version: 3.16
This package provides class and other infrastructure to implement filters for manipulating Bioconductor annotation resources. The filters will be used by ensembldb, Organism.dplyr, and other packages.
Author: Martin Morgan [aut], Johannes Rainer [aut], Joachim Bargsten [ctb], Daniel Van Twisk [ctb], Bioconductor Package Maintainer [cre]
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
Citation (from within R,
enter citation("AnnotationFilter")
):
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("AnnotationFilter")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("AnnotationFilter")
HTML | R Script | Facilities for Filtering Bioconductor Annotation resources |
Reference Manual | ||
Text | NEWS |
biocViews | Annotation, Infrastructure, Software |
Version | 1.22.0 |
In Bioconductor since | BioC 3.5 (R-3.4) (6 years) |
License | Artistic-2.0 |
Depends | R (>= 3.4.0) |
Imports | utils, methods, GenomicRanges, lazyeval |
LinkingTo | |
Suggests | BiocStyle, knitr, testthat, RSQLite, org.Hs.eg.db, rmarkdown |
SystemRequirements | |
Enhances | |
URL | https://github.com/Bioconductor/AnnotationFilter |
BugReports | https://github.com/Bioconductor/AnnotationFilter/issues |
Depends On Me | chimeraviz, CompoundDb, ensembldb, Organism.dplyr |
Imports Me | biovizBase, BUSpaRse, drugTargetInteractions, GenomicDistributionsData, ggbio, proteasy, QFeatures, RITAN, scanMiRApp, TVTB |
Suggests Me | dasper, GenomicDistributions, GenomicFeatures, TFutils, wiggleplotr |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | AnnotationFilter_1.22.0.tar.gz |
Windows Binary | AnnotationFilter_1.22.0.zip |
macOS Binary (x86_64) | AnnotationFilter_1.22.0.tgz |
macOS Binary (arm64) | AnnotationFilter_1.22.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/AnnotationFilter |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/AnnotationFilter |
Bioc Package Browser | https://code.bioconductor.org/browse/AnnotationFilter/ |
Package Short Url | https://bioconductor.org/packages/AnnotationFilter/ |
Package Downloads Report | Download Stats |
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