drugTargetInteractions

DOI: 10.18129/B9.bioc.drugTargetInteractions  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see drugTargetInteractions.

Drug-Target Interactions

Bioconductor version: 3.16

Provides utilities for identifying drug-target interactions for sets of small molecule or gene/protein identifiers. The required drug-target interaction information is obained from a local SQLite instance of the ChEMBL database. ChEMBL has been chosen for this purpose, because it provides one of the most comprehensive and best annotatated knowledge resources for drug-target information available in the public domain.

Author: Thomas Girke [cre, aut]

Maintainer: Thomas Girke <thomas.girke at ucr.edu>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("drugTargetInteractions")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("drugTargetInteractions")

 

HTML	R Script	Drug-Target Interactions
PDF		Reference Manual
Text		NEWS

Details

biocViews	BiomedicalInformatics, Cheminformatics, Metabolomics, Pharmacogenetics, Pharmacogenomics, Proteomics, Software
Version	1.6.0
In Bioconductor since	BioC 3.13 (R-4.1) (2 years)
License	Artistic-2.0
Depends	methods, R (>= 4.1)
Imports	utils, RSQLite, UniProt.ws, biomaRt, ensembldb, BiocFileCache, dplyr, rappdirs, AnnotationFilter, S4Vectors
LinkingTo
Suggests	RUnit, BiocStyle, knitr, rmarkdown, ggplot2, reshape2, DT, EnsDb.Hsapiens.v86
SystemRequirements
Enhances
URL	https://github.com/girke-lab/drugTargetInteractions
BugReports	https://github.com/girke-lab/drugTargetInteractions
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	drugTargetInteractions_1.6.0.tar.gz
Windows Binary	drugTargetInteractions_1.6.0.zip
macOS Binary (x86_64)	drugTargetInteractions_1.6.0.tgz
macOS Binary (arm64)	drugTargetInteractions_1.6.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/drugTargetInteractions
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/drugTargetInteractions
Bioc Package Browser	https://code.bioconductor.org/browse/drugTargetInteractions/
Package Short Url	https://bioconductor.org/packages/drugTargetInteractions/
Package Downloads Report	Download Stats