proteasy

DOI: 10.18129/B9.bioc.proteasy  

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see proteasy.

Protease Mapping

Bioconductor version: 3.16

Retrieval of experimentally derived protease- and cleavage data derived from the MEROPS database. Proteasy contains functions for mapping peptide termini to known sites where a protease cleaves. This package also makes it possible to quickly look up known substrates based on a list of (potential) proteases, or vice versa - look up proteases based on a list of substrates.

Author: Martin Rydén [aut, cre]

Maintainer: Martin Rydén <martin.ryden at med.lu.se>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("proteasy")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("proteasy")

 

HTML	R Script	Using proteasy to Retrieve and Analyze Protease Data
PDF		Reference Manual
Text		NEWS

Details

biocViews	BiomedicalInformatics, FunctionalGenomics, Proteomics, Software
Version	1.0.0
In Bioconductor since	BioC 3.16 (R-4.2) (< 6 months)
License	GPL-3
Depends	R (>= 4.2.0)
Imports	data.table, stringr, ensembldb, AnnotationFilter, EnsDb.Hsapiens.v86, EnsDb.Mmusculus.v79, EnsDb.Rnorvegicus.v79, Rcpi, methods, utils
LinkingTo
Suggests	BiocStyle, knitr, rmarkdown, igraph, ComplexHeatmap, viridis
SystemRequirements
Enhances
URL	https://github.com/martinry/proteasy
BugReports	https://github.com/martinry/proteasy/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	proteasy_1.0.0.tar.gz
Windows Binary	proteasy_1.0.0.zip
macOS Binary (x86_64)	proteasy_1.0.0.tgz
macOS Binary (arm64)	proteasy_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/proteasy
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/proteasy
Bioc Package Browser	https://code.bioconductor.org/browse/proteasy/
Package Short Url	https://bioconductor.org/packages/proteasy/
Package Downloads Report	Download Stats