flowCore

DOI: 10.18129/B9.bioc.flowCore    

flowCore: Basic structures for flow cytometry data

Bioconductor version: Release (3.13)

Provides S4 data structures and basic functions to deal with flow cytometry data.

Author: B Ellis [aut], Perry Haaland [aut], Florian Hahne [aut], Nolwenn Le Meur [aut], Nishant Gopalakrishnan [aut], Josef Spidlen [aut], Mike Jiang [aut, cre], Greg Finak [aut], Samuel Granjeaud [ctb]

Maintainer: Mike Jiang <mike at ozette.ai>

Citation (from within R, enter citation("flowCore")):

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("flowCore")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowCore")

 

PDF R Script Basic Functions for Flow Cytometry Data
HTML fcs3.html
HTML hyperlog.notice.html
PDF   Reference Manual
Text   NEWS

Details

biocViews CellBasedAssays, FlowCytometry, ImmunoOncology, Infrastructure, Software
Version 2.4.0
In Bioconductor since BioC 2.0 (R-2.5) (14.5 years)
License Artistic-2.0
Depends R (>= 3.5.0)
Imports Biobase, BiocGenerics(>= 0.29.2), grDevices, graphics, methods, stats, utils, stats4, Rcpp, matrixStats, cytolib(>= 2.3.4), S4Vectors
LinkingTo Rcpp, RcppArmadillo, BH (>= 1.65.0.1), cytolib, RProtoBufLib
Suggests Rgraphviz, flowViz, flowStats(>= 3.43.4), testthat, flowWorkspace, flowWorkspaceData, openCyto, knitr, ggcyto, gridExtra
SystemRequirements GNU make, C++11
Enhances
URL
Depends On Me flowBeads, flowBin, flowClean, flowCut, flowFP, flowMatch, flowTime, flowTrans, flowViz, flowVS, ggcyto, HDCytoData, healthyFlowData, highthroughputassays, immunoClust, infinityFlow, ncdfFlow
Imports Me CATALYST, cmapR, CONFESS, cyanoFilter, cydar, CytoDx, cytofast, CytoML, CytoTree, ddPCRclust, diffcyt, flowAI, flowBeads, flowCHIC, flowClust, flowDensity, flowMeans, flowMerge, flowPloidy, FlowSOM, flowSpecs, flowStats, flowTrans, flowUtils, flowViz, flowWorkspace, GateFinder, ImmuneSpaceR, MetaCyto, ncdfFlow, oneSENSE, openCyto, PeacoQC, scDataviz, Sconify
Suggests Me COMPASS, flowPloidyData, FlowRepositoryR, RchyOptimyx
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package flowCore_2.4.0.tar.gz
Windows Binary flowCore_2.4.0.zip
macOS 10.13 (High Sierra) flowCore_2.4.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/flowCore
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/flowCore
Package Short Url https://bioconductor.org/packages/flowCore/
Package Downloads Report Download Stats

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