flowCore

DOI: 10.18129/B9.bioc.flowCore    

flowCore: Basic structures for flow cytometry data

Bioconductor version: Release (3.13)

Provides S4 data structures and basic functions to deal with flow cytometry data.

Author: B Ellis [aut], Perry Haaland [aut], Florian Hahne [aut], Nolwenn Le Meur [aut], Nishant Gopalakrishnan [aut], Josef Spidlen [aut], Mike Jiang [aut, cre], Greg Finak [aut], Samuel Granjeaud [ctb]

Maintainer: Mike Jiang <mike at ozette.ai>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("flowCore")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowCore")

 

PDF	R Script	Basic Functions for Flow Cytometry Data
HTML		fcs3.html
HTML		hyperlog.notice.html
PDF		Reference Manual
Text		NEWS

Details

biocViews	CellBasedAssays, FlowCytometry, ImmunoOncology, Infrastructure, Software
Version	2.4.0
In Bioconductor since	BioC 2.0 (R-2.5) (14.5 years)
License	Artistic-2.0
Depends	R (>= 3.5.0)
Imports	Biobase, BiocGenerics(>= 0.29.2), grDevices, graphics, methods, stats, utils, stats4, Rcpp, matrixStats, cytolib(>= 2.3.4), S4Vectors
LinkingTo	Rcpp, RcppArmadillo, BH (>= 1.65.0.1), cytolib, RProtoBufLib
Suggests	Rgraphviz, flowViz, flowStats(>= 3.43.4), testthat, flowWorkspace, flowWorkspaceData, openCyto, knitr, ggcyto, gridExtra
SystemRequirements	GNU make, C++11
Enhances
URL
Depends On Me	flowBeads, flowBin, flowClean, flowCut, flowFP, flowMatch, flowTime, flowTrans, flowViz, flowVS, ggcyto, HDCytoData, healthyFlowData, highthroughputassays, immunoClust, infinityFlow, ncdfFlow
Imports Me	CATALYST, cmapR, CONFESS, cyanoFilter, cydar, CytoDx, cytofast, CytoML, CytoTree, ddPCRclust, diffcyt, flowAI, flowBeads, flowCHIC, flowClust, flowDensity, flowMeans, flowMerge, flowPloidy, FlowSOM, flowSpecs, flowStats, flowTrans, flowUtils, flowViz, flowWorkspace, GateFinder, ImmuneSpaceR, MetaCyto, ncdfFlow, oneSENSE, openCyto, PeacoQC, scDataviz, Sconify
Suggests Me	COMPASS, flowPloidyData, FlowRepositoryR, RchyOptimyx
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	flowCore_2.4.0.tar.gz
Windows Binary	flowCore_2.4.0.zip
macOS 10.13 (High Sierra)	flowCore_2.4.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/flowCore
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/flowCore
Package Short Url	https://bioconductor.org/packages/flowCore/
Package Downloads Report	Download Stats