flowPloidy

DOI: 10.18129/B9.bioc.flowPloidy    

Analyze flow cytometer data to determine sample ploidy

Bioconductor version: Release (3.13)

Determine sample ploidy via flow cytometry histogram analysis. Reads Flow Cytometry Standard (FCS) files via the flowCore bioconductor package, and provides functions for determining the DNA ploidy of samples based on internal standards.

Author: Tyler Smith <tyler at plantarum.ca>

Maintainer: Tyler Smith <tyler at plantarum.ca>

Installation

To install this package, start R (version "4.1") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("flowPloidy")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowPloidy")

 

PDF	R Script	flowPloidy: FCM Histograms
PDF	R Script	flowPloidy: Getting Started
PDF		Reference Manual
Text		NEWS

Details

biocViews	FlowCytometry, GUI, Regression, Software, Visualization
Version	1.18.0
In Bioconductor since	BioC 3.4 (R-3.3) (5 years)
License	GPL-3
Depends
Imports	flowCore, car, caTools, knitr, rmarkdown, minpack.lm, shiny, methods, graphics, stats, utils
LinkingTo
Suggests	flowPloidyData, testthat
SystemRequirements
Enhances
URL	https://github.com/plantarum/flowPloidy
BugReports	https://github.com/plantarum/flowPloidy/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	flowPloidy_1.18.0.tar.gz
Windows Binary	flowPloidy_1.18.0.zip (32- & 64-bit)
macOS 10.13 (High Sierra)	flowPloidy_1.18.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/flowPloidy
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/flowPloidy
Package Short Url	https://bioconductor.org/packages/flowPloidy/
Package Downloads Report	Download Stats