Bioconductor version: Release (3.13)
Determine sample ploidy via flow cytometry histogram analysis. Reads Flow Cytometry Standard (FCS) files via the flowCore bioconductor package, and provides functions for determining the DNA ploidy of samples based on internal standards.
Author: Tyler Smith <tyler at plantarum.ca>
Maintainer: Tyler Smith <tyler at plantarum.ca>
Citation (from within R,
enter citation("flowPloidy")
):
To install this package, start R (version "4.1") and enter:
if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("flowPloidy")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("flowPloidy")
R Script | flowPloidy: FCM Histograms | |
R Script | flowPloidy: Getting Started | |
Reference Manual | ||
Text | NEWS |
biocViews | FlowCytometry, GUI, Regression, Software, Visualization |
Version | 1.18.0 |
In Bioconductor since | BioC 3.4 (R-3.3) (5 years) |
License | GPL-3 |
Depends | |
Imports | flowCore, car, caTools, knitr, rmarkdown, minpack.lm, shiny, methods, graphics, stats, utils |
LinkingTo | |
Suggests | flowPloidyData, testthat |
SystemRequirements | |
Enhances | |
URL | https://github.com/plantarum/flowPloidy |
BugReports | https://github.com/plantarum/flowPloidy/issues |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | flowPloidy_1.18.0.tar.gz |
Windows Binary | flowPloidy_1.18.0.zip (32- & 64-bit) |
macOS 10.13 (High Sierra) | flowPloidy_1.18.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/flowPloidy |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/flowPloidy |
Package Short Url | https://bioconductor.org/packages/flowPloidy/ |
Package Downloads Report | Download Stats |
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