To install this package, start R and enter:

## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("genefilter")

In most cases, you don't need to download the package archive at all.

genefilter

 

genefilter: methods for filtering genes from high-throughput experiments

Bioconductor version: Release (3.1)

Some basic functions for filtering genes

Author: R. Gentleman, V. Carey, W. Huber, F. Hahne

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("genefilter")):

Installation

To install this package, start R and enter:

## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("genefilter")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("genefilter")

 

PDF R Script Additional plots for: Independent filtering increases power for detecting differentially expressed genes, Bourgon et al., PNAS (2010)
PDF R Script Diagnostics for independent filtering
PDF R Script How to find genes whose expression profile is similar to that of specified genes
PDF R Script Using the genefilter function to filter genes from a microarray dataset
PDF   Reference Manual

Details

biocViews Microarray, Software
Version 1.50.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 10.5 years)
License Artistic-2.0
Depends
Imports AnnotationDbi, annotate, Biobase, graphics, methods, stats, survival
LinkingTo
Suggests class, hgu95av2.db, tkWidgets, ALL, ROC, DESeq, pasilla, BiocStyle, knitr
SystemRequirements
Enhances
URL
Depends On Me a4Base, ampliQueso, cellHTS, cellHTS2, charm, CNTools, GeneMeta, Hiiragi2013, simpleaffy, sva
Imports Me affyQCReport, annmap, arrayQualityMetrics, Category, DESeq, DESeq2, DEXSeq, eisa, gCMAP, GGBase, GSRI, methyAnalysis, methylumi, minfi, MLInterfaces, mogsa, PECA, phenoTest, Ringo, RNAinteractMAPK, simpleaffy, tilingArray, XDE
Suggests Me AffyExpress, annotate, ArrayTools, BiocCaseStudies, BioNet, Category, categoryCompare, clusterStab, codelink, compcodeR, curatedBladderData, curatedCRCData, curatedOvarianData, estrogen, factDesign, ffpe, ffpeExampleData, gageData, GenomicFiles, GOstats, GSAR, GSEAlm, GSVA, logicFS, lumi, MAQCsubset, MCRestimate, npGSEA, oligo, oneChannelGUI, phyloseq, pvac, qpgraph, rheumaticConditionWOLLBOLD, rtracklayer, siggenes, SSPA, topGO, XDE
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source genefilter_1.50.0.tar.gz
Windows Binary genefilter_1.50.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) genefilter_1.50.0.tgz
Mac OS X 10.9 (Mavericks) genefilter_1.50.0.tgz
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/genefilter/tree/release-3.1
Package Short Url http://bioconductor.org/packages/genefilter/
Package Downloads Report Download Stats

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