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To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("siggenes")
In most cases, you don't need to download the package archive at all.
siggenes
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Multiple testing using SAM and Efron's empirical Bayes approaches
Bioconductor version: Release (3.1)
Identification of differentially expressed genes and estimation of the False Discovery Rate (FDR) using both the Significance Analysis of Microarrays (SAM) and the Empirical Bayes Analyses of Microarrays (EBAM).
Author: Holger Schwender
Maintainer: Holger Schwender <holger.schw at gmx.de>
Citation (from within R,
enter citation("siggenes")):
Installation
To install this package, start R and enter:
## try http if https is not available
source("https://bioconductor.org/biocLite.R")
biocLite("siggenes")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("siggenes")
| R Script | siggenes Manual | |
| Reference Manual |
Details
| biocViews | DifferentialExpression, ExonArray, GeneExpression, Microarray, MultipleComparison, SNP, Software |
| Version | 1.42.0 |
| In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 10.5 years) |
| License | LGPL (>= 2) |
| Depends | methods, Biobase, multtest, splines, graphics |
| Imports | stats4 |
| LinkingTo | |
| Suggests | affy, annotate, genefilter, KernSmooth, scrime (>= 1.2.5) |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | KCsmart, oneChannelGUI |
| Imports Me | charm, DeSousa2013, GeneSelector, minfi |
| Suggests Me | GeneSelector, logicFS, trio, XDE |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | siggenes_1.42.0.tar.gz |
| Windows Binary | siggenes_1.42.0.zip |
| Mac OS X 10.6 (Snow Leopard) | siggenes_1.42.0.tgz |
| Mac OS X 10.9 (Mavericks) | siggenes_1.42.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/siggenes/tree/release-3.1 |
| Package Short Url | http://bioconductor.org/packages/siggenes/ |
| Package Downloads Report | Download Stats |
Documentation »
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