Multiple platform build/check report for BioC 3.19 - CHECK results for graper on merida1

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 22.04.3 LTS)	x86_64	4.4.0 (2024-04-24) -- "Puppy Cup"	4760
palomino3	Windows Server 2022 Datacenter	x64	4.4.0 (2024-04-24 ucrt) -- "Puppy Cup"	4494
merida1	macOS 12.7.4 Monterey	x86_64	4.4.0 (2024-04-24) -- "Puppy Cup"	4508
kjohnson1	macOS 13.6.6 Ventura	arm64	4.4.0 (2024-04-24) -- "Puppy Cup"	4466
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

CHECK results for graper on merida1

To the developers/maintainers of the graper package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/graper.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: graper

Version: 1.20.0

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:graper.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings graper_1.20.0.tar.gz

StartedAt: 2024-06-24 05:33:33 -0400 (Mon, 24 Jun 2024)

EndedAt: 2024-06-24 05:35:59 -0400 (Mon, 24 Jun 2024)

EllapsedTime: 146.4 seconds

RetCode: 0

Status: WARNINGS

CheckDir: graper.Rcheck

Warnings: 1

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:graper.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings graper_1.20.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.19-bioc/meat/graper.Rcheck’
* using R version 4.4.0 (2024-04-24)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.4
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘graper/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘graper’ version ‘1.20.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘graper’ can be installed ... WARNING
Found the following significant warnings:
  /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/BH/include/boost/math/tools/config.hpp:23:6: warning: "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-W#warnings]
  #    warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)"
See ‘/Users/biocbuild/bbs-3.19-bioc/meat/graper.Rcheck/00install.out’ for details.
* used C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
* used SDK: ‘MacOSX11.3.sdk’
* checking C++ specification ... NOTE
  Specified C++11: please drop specification unless essential
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
checkRd: (-1) predict.graper.Rd:19-21: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:22: Lost braces in \itemize; meant \describe ?
checkRd: (-1) predict.graper.Rd:23-24: Lost braces in \itemize; meant \describe ?
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 3 NOTEs
See
  ‘/Users/biocbuild/bbs-3.19-bioc/meat/graper.Rcheck/00check.log’
for details.

Installation output

graper.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL graper
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’
* installing *source* package ‘graper’ ...
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using C++11
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch x86_64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/BH/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c RcppExports.cpp -o RcppExports.o
clang++ -arch x86_64 -std=gnu++11 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/RcppArmadillo/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/BH/include' -I/opt/R/x86_64/include    -fPIC  -falign-functions=64 -Wall -g -O2   -c fit_graper.cpp -o fit_graper.o
In file included from fit_graper.cpp:4:
In file included from ./graper_linear_dense_ff.h:2:
In file included from /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/BH/include/boost/math/special_functions/digamma.hpp:15:
In file included from /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/BH/include/boost/math/special_functions/math_fwd.hpp:29:
In file included from /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/BH/include/boost/math/special_functions/detail/round_fwd.hpp:11:
/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/BH/include/boost/math/tools/config.hpp:23:6: warning: "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-W#warnings]
#    warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)"
     ^
1 warning generated.
clang++ -arch x86_64 -std=gnu++11 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o graper.so RcppExports.o fit_graper.o -L/Library/Frameworks/R.framework/Resources/lib -lRlapack -L/Library/Frameworks/R.framework/Resources/lib -lRblas -L/opt/gfortran/lib/gcc/x86_64-apple-darwin20.0/12.2.0 -L/opt/gfortran/lib -lgfortran -lquadmath -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/00LOCK-graper/00new/graper/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (graper)

Tests output

graper.Rcheck/tests/testthat.Rout


R version 4.4.0 (2024-04-24) -- "Puppy Cup"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(testthat)
> library(graper)
> 
> test_check("graper")
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-854.229
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-574.89
ELB improved by 279.338

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-516.085
ELB improved by 58.8049

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-478.639
ELB improved by 37.4469

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-461.936
ELB improved by 16.7022

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-454.96
ELB improved by 6.97604

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-450.356
ELB improved by 4.60409

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-445.88
ELB improved by 4.47638

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.931
ELB improved by 4.94903

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.32
ELB improved by 5.61069

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-429.329
ELB improved by 5.99106

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-423.8
ELB improved by 5.52905

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.594
ELB improved by 4.2063

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-416.881
ELB improved by 2.71327

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.242
ELB improved by 1.63809

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-414.208
ELB improved by 1.03486

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-413.482
ELB improved by 0.725419

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.914
ELB improved by 0.567943

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.422
ELB improved by 0.491945

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.957
ELB improved by 0.465537

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.494
ELB improved by 0.463156

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.046
ELB improved by 0.447278

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.648
ELB improved by 0.398665

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.306
ELB improved by 0.341765

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.006
ELB improved by 0.299386

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.734
ELB improved by 0.272958

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.476
ELB improved by 0.257058

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.229
ELB improved by 0.247308

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.988
ELB improved by 0.241192

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.751
ELB improved by 0.237375

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.515
ELB improved by 0.235132

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.281
ELB improved by 0.234039

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.048
ELB improved by 0.23383

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.813
ELB improved by 0.234342

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.578
ELB improved by 0.235521

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.34
ELB improved by 0.237458

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.1
ELB improved by 0.240474

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.855
ELB improved by 0.245231

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.602
ELB improved by 0.252909

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.336
ELB improved by 0.265382

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.051
ELB improved by 0.285053

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.738
ELB improved by 0.313

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.395
ELB improved by 0.34371

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.033
ELB improved by 0.36174

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.678
ELB improved by 0.355086

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.348
ELB improved by 0.330075

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.049
ELB improved by 0.298874

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.782
ELB improved by 0.26676

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.547
ELB improved by 0.23477

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.344
ELB improved by 0.20349

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.17
ELB improved by 0.1738

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.023
ELB improved by 0.146596

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.901
ELB improved by 0.122511

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.799
ELB improved by 0.101825

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.714
ELB improved by 0.0844962

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.644
ELB improved by 0.070263

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.585
ELB improved by 0.0587434

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.536
ELB improved by 0.049518

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.494
ELB improved by 0.042185

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.457
ELB improved by 0.0363905

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.426
ELB improved by 0.0318427

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.397
ELB improved by 0.0283145

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.372
ELB improved by 0.0256423

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.348
ELB improved by 0.0237239

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.325
ELB improved by 0.0225205

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.303
ELB improved by 0.0220616

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.281
ELB improved by 0.022456

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.257
ELB improved by 0.0238981

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.23
ELB improved by 0.0266462

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.199
ELB improved by 0.0309022

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.163
ELB improved by 0.036485

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.121
ELB improved by 0.0422788

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.075
ELB improved by 0.0459652

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.03
ELB improved by 0.0451305

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.99
ELB improved by 0.0395286

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.958
ELB improved by 0.0315697

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.934
ELB improved by 0.0240266

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.916
ELB improved by 0.0181979

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.902
ELB improved by 0.0141058

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.891
ELB improved by 0.0113208

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.881
ELB improved by 0.00941699

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-890.156
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-586.641
ELB improved by 303.515

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-527.35
ELB improved by 59.2906

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-488.071
ELB improved by 39.2793

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-469.863
ELB improved by 18.2079

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-462.303
ELB improved by 7.55998

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-457.35
ELB improved by 4.95328

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-452.616
ELB improved by 4.73399

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-447.274
ELB improved by 5.34191

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.832
ELB improved by 6.44229

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.234
ELB improved by 7.59814

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-425.573
ELB improved by 7.6602

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-419.538
ELB improved by 6.03578

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-415.51
ELB improved by 4.02775

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-412.795
ELB improved by 2.71463

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-410.772
ELB improved by 2.02337

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-409.22
ELB improved by 1.55224

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-408.083
ELB improved by 1.13671

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-407.241
ELB improved by 0.842337

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.573
ELB improved by 0.667561

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-406.009
ELB improved by 0.564266

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.509
ELB improved by 0.500134

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.05
ELB improved by 0.458562

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.619
ELB improved by 0.430974

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-404.206
ELB improved by 0.412787

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.804
ELB improved by 0.401772

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.407
ELB improved by 0.397551

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-403.005
ELB improved by 0.401536

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.589
ELB improved by 0.415987

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-402.15
ELB improved by 0.439191

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.693
ELB improved by 0.457678

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-401.238
ELB improved by 0.454385

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.806
ELB improved by 0.431928

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.402
ELB improved by 0.404608

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-400.023
ELB improved by 0.379026

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.667
ELB improved by 0.355378

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.334
ELB improved by 0.332691

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.024
ELB improved by 0.310325

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.736
ELB improved by 0.288029

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.47
ELB improved by 0.265811

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.226
ELB improved by 0.243841

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-398.004
ELB improved by 0.222365

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.802
ELB improved by 0.201644

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.621
ELB improved by 0.181901

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.457
ELB improved by 0.163304

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.311
ELB improved by 0.145958

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.181
ELB improved by 0.12992

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-397.066
ELB improved by 0.115212

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.964
ELB improved by 0.101831

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.875
ELB improved by 0.0897532

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.796
ELB improved by 0.0789327

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.726
ELB improved by 0.0693072

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.666
ELB improved by 0.0607985

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.612
ELB improved by 0.053318

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.565
ELB improved by 0.046771

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.524
ELB improved by 0.0410618

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.488
ELB improved by 0.0360972

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.457
ELB improved by 0.0317887

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.428
ELB improved by 0.0280549

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.404
ELB improved by 0.0248219

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.382
ELB improved by 0.0220236

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.362
ELB improved by 0.0196016

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.345
ELB improved by 0.0175046

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.329
ELB improved by 0.0156879

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.315
ELB improved by 0.0141127

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.302
ELB improved by 0.0127455

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.29
ELB improved by 0.0115574

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.28
ELB improved by 0.0105236

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-396.27
ELB improved by 0.00962247

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-926.736
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-602.226
ELB improved by 324.51

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-541.45
ELB improved by 60.7758

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-501.868
ELB improved by 39.5824

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-485.278
ELB improved by 16.59

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-477.998
ELB improved by 7.28025

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-473.495
ELB improved by 4.50314

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-469.954
ELB improved by 3.54054

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-466.838
ELB improved by 3.11597

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-463.975
ELB improved by 2.86296

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-461.355
ELB improved by 2.61978

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-459.039
ELB improved by 2.31622

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-457.089
ELB improved by 1.9503

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-455.524
ELB improved by 1.56498

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-454.311
ELB improved by 1.21239

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-453.386
ELB improved by 0.925495

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-452.674
ELB improved by 0.711483

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-452.114
ELB improved by 0.560429

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-451.657
ELB improved by 0.456635

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-451.272
ELB improved by 0.385647

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-450.935
ELB improved by 0.336374

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-450.635
ELB improved by 0.300474

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-450.363
ELB improved by 0.271384

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-450.119
ELB improved by 0.244474

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-449.901
ELB improved by 0.218073

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-449.708
ELB improved by 0.193317

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-449.535
ELB improved by 0.172178

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-449.38
ELB improved by 0.155698

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-449.236
ELB improved by 0.143778

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-449.1
ELB improved by 0.135773

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-448.969
ELB improved by 0.130988

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-448.84
ELB improved by 0.128891

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-448.711
ELB improved by 0.129136

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-448.58
ELB improved by 0.131541

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-448.444
ELB improved by 0.136047

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-448.301
ELB improved by 0.142689

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-448.149
ELB improved by 0.15157

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-447.986
ELB improved by 0.162846

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-447.81
ELB improved by 0.176715

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-447.616
ELB improved by 0.193404

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-447.403
ELB improved by 0.213165

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-447.167
ELB improved by 0.236271

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-446.904
ELB improved by 0.263015

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-446.61
ELB improved by 0.293706

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-446.282
ELB improved by 0.328664

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-445.913
ELB improved by 0.368187

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-445.501
ELB improved by 0.412493

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-445.039
ELB improved by 0.461598

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-444.524
ELB improved by 0.515161

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.952
ELB improved by 0.572321

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-443.32
ELB improved by 0.631667

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-442.629
ELB improved by 0.691582

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.877
ELB improved by 0.751102

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-441.067
ELB improved by 0.810214

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-440.203
ELB improved by 0.86419

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-439.315
ELB improved by 0.888312

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.459
ELB improved by 0.855198

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-437.66
ELB improved by 0.79953

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.887
ELB improved by 0.773324

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-436.151
ELB improved by 0.735983

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-435.515
ELB improved by 0.635504

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.999
ELB improved by 0.516421

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.57
ELB improved by 0.428614

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-434.19
ELB improved by 0.379759

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.851
ELB improved by 0.339481

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.564
ELB improved by 0.287302

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.323
ELB improved by 0.24063

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-433.112
ELB improved by 0.210978

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.919
ELB improved by 0.192548

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.735
ELB improved by 0.18455

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.546
ELB improved by 0.189035

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.354
ELB improved by 0.191525

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.185
ELB improved by 0.168986

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.06
ELB improved by 0.125772

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.974
ELB improved by 0.0852094

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.917
ELB improved by 0.0577854

iteration 77
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.875
ELB improved by 0.0415648

iteration 78
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.843
ELB improved by 0.0321829

iteration 79
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.816
ELB improved by 0.0265213

iteration 80
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.793
ELB improved by 0.0228413

iteration 81
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.773
ELB improved by 0.0202501

iteration 82
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.755
ELB improved by 0.018296

iteration 83
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.738
ELB improved by 0.0167462

iteration 84
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.723
ELB improved by 0.015476

iteration 85
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.708
ELB improved by 0.014415

iteration 86
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.695
ELB improved by 0.0135214

iteration 87
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.682
ELB improved by 0.0127693

iteration 88
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.67
ELB improved by 0.0121425

iteration 89
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.658
ELB improved by 0.0116318

iteration 90
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.647
ELB improved by 0.0112335

iteration 91
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.636
ELB improved by 0.0109493

iteration 92
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.625
ELB improved by 0.0107863

iteration 93
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.614
ELB improved by 0.0107579

iteration 94
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.604
ELB improved by 0.0108849

iteration 95
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.592
ELB improved by 0.0111964

iteration 96
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.581
ELB improved by 0.0117299

iteration 97
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.568
ELB improved by 0.0125302

iteration 98
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.554
ELB improved by 0.0136438

iteration 99
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.539
ELB improved by 0.0151093

iteration 100
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.522
ELB improved by 0.0169428

iteration 101
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.503
ELB improved by 0.0191302

iteration 102
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.482
ELB improved by 0.0216454

iteration 103
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.457
ELB improved by 0.0245219

iteration 104
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.429
ELB improved by 0.0279797

iteration 105
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.397
ELB improved by 0.0325569

iteration 106
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.357
ELB improved by 0.0391443

iteration 107
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.309
ELB improved by 0.0487454

iteration 108
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.247
ELB improved by 0.0614871

iteration 109
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.173
ELB improved by 0.0742144

iteration 110
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.094
ELB improved by 0.0786334

iteration 111
Updating parameters of variational distributions...
Calculating ELB..
ELB=-431.027
ELB improved by 0.0676763

iteration 112
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.98
ELB improved by 0.0468296

iteration 113
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.952
ELB improved by 0.0281091

iteration 114
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.935
ELB improved by 0.0163428

iteration 115
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.925
ELB improved by 0.010029

iteration 116
Updating parameters of variational distributions...
Calculating ELB..
ELB=-430.919
ELB improved by 0.00680091

ELB converged
iteration 1
Updating parameters of variational distributions...
Calculating ELB..
ELB=-838.83
ELB improved by inf

iteration 2
Updating parameters of variational distributions...
Calculating ELB..
ELB=-584.377
ELB improved by 254.453

iteration 3
Updating parameters of variational distributions...
Calculating ELB..
ELB=-526.467
ELB improved by 57.9096

iteration 4
Updating parameters of variational distributions...
Calculating ELB..
ELB=-478.158
ELB improved by 48.3091

iteration 5
Updating parameters of variational distributions...
Calculating ELB..
ELB=-450.538
ELB improved by 27.6202

iteration 6
Updating parameters of variational distributions...
Calculating ELB..
ELB=-438.861
ELB improved by 11.6769

iteration 7
Updating parameters of variational distributions...
Calculating ELB..
ELB=-432.559
ELB improved by 6.30159

iteration 8
Updating parameters of variational distributions...
Calculating ELB..
ELB=-427.567
ELB improved by 4.99213

iteration 9
Updating parameters of variational distributions...
Calculating ELB..
ELB=-422.664
ELB improved by 4.90377

iteration 10
Updating parameters of variational distributions...
Calculating ELB..
ELB=-417.312
ELB improved by 5.35136

iteration 11
Updating parameters of variational distributions...
Calculating ELB..
ELB=-411.356
ELB improved by 5.95623

iteration 12
Updating parameters of variational distributions...
Calculating ELB..
ELB=-405.186
ELB improved by 6.1703

iteration 13
Updating parameters of variational distributions...
Calculating ELB..
ELB=-399.672
ELB improved by 5.51386

iteration 14
Updating parameters of variational distributions...
Calculating ELB..
ELB=-395.512
ELB improved by 4.15949

iteration 15
Updating parameters of variational distributions...
Calculating ELB..
ELB=-392.74
ELB improved by 2.7719

iteration 16
Updating parameters of variational distributions...
Calculating ELB..
ELB=-390.984
ELB improved by 1.75636

iteration 17
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.854
ELB improved by 1.13046

iteration 18
Updating parameters of variational distributions...
Calculating ELB..
ELB=-389.079
ELB improved by 0.774918

iteration 19
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.499
ELB improved by 0.579318

iteration 20
Updating parameters of variational distributions...
Calculating ELB..
ELB=-388.027
ELB improved by 0.472387

iteration 21
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.613
ELB improved by 0.413882

iteration 22
Updating parameters of variational distributions...
Calculating ELB..
ELB=-387.231
ELB improved by 0.382281

iteration 23
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.865
ELB improved by 0.366167

iteration 24
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.505
ELB improved by 0.359334

iteration 25
Updating parameters of variational distributions...
Calculating ELB..
ELB=-386.147
ELB improved by 0.35829

iteration 26
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.786
ELB improved by 0.361044

iteration 27
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.419
ELB improved by 0.366522

iteration 28
Updating parameters of variational distributions...
Calculating ELB..
ELB=-385.045
ELB improved by 0.374265

iteration 29
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.661
ELB improved by 0.384206

iteration 30
Updating parameters of variational distributions...
Calculating ELB..
ELB=-384.265
ELB improved by 0.396445

iteration 31
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.854
ELB improved by 0.410984

iteration 32
Updating parameters of variational distributions...
Calculating ELB..
ELB=-383.426
ELB improved by 0.427409

iteration 33
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.982
ELB improved by 0.44457

iteration 34
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.521
ELB improved by 0.46033

iteration 35
Updating parameters of variational distributions...
Calculating ELB..
ELB=-382.05
ELB improved by 0.471552

iteration 36
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.575
ELB improved by 0.474521

iteration 37
Updating parameters of variational distributions...
Calculating ELB..
ELB=-381.109
ELB improved by 0.465893

iteration 38
Updating parameters of variational distributions...
Calculating ELB..
ELB=-380.665
ELB improved by 0.443942

iteration 39
Updating parameters of variational distributions...
Calculating ELB..
ELB=-380.256
ELB improved by 0.409483

iteration 40
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.89
ELB improved by 0.365857

iteration 41
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.572
ELB improved by 0.317871

iteration 42
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.302
ELB improved by 0.270311

iteration 43
Updating parameters of variational distributions...
Calculating ELB..
ELB=-379.075
ELB improved by 0.226804

iteration 44
Updating parameters of variational distributions...
Calculating ELB..
ELB=-378.886
ELB improved by 0.189387

iteration 45
Updating parameters of variational distributions...
Calculating ELB..
ELB=-378.727
ELB improved by 0.158658

iteration 46
Updating parameters of variational distributions...
Calculating ELB..
ELB=-378.593
ELB improved by 0.134154

iteration 47
Updating parameters of variational distributions...
Calculating ELB..
ELB=-378.478
ELB improved by 0.114762

iteration 48
Updating parameters of variational distributions...
Calculating ELB..
ELB=-378.379
ELB improved by 0.0990996

iteration 49
Updating parameters of variational distributions...
Calculating ELB..
ELB=-378.293
ELB improved by 0.0858921

iteration 50
Updating parameters of variational distributions...
Calculating ELB..
ELB=-378.219
ELB improved by 0.0742853

iteration 51
Updating parameters of variational distributions...
Calculating ELB..
ELB=-378.155
ELB improved by 0.0639518

iteration 52
Updating parameters of variational distributions...
Calculating ELB..
ELB=-378.1
ELB improved by 0.0549325

iteration 53
Updating parameters of variational distributions...
Calculating ELB..
ELB=-378.052
ELB improved by 0.0473708

iteration 54
Updating parameters of variational distributions...
Calculating ELB..
ELB=-378.011
ELB improved by 0.0413424

iteration 55
Updating parameters of variational distributions...
Calculating ELB..
ELB=-377.974
ELB improved by 0.036826

iteration 56
Updating parameters of variational distributions...
Calculating ELB..
ELB=-377.941
ELB improved by 0.0337441

iteration 57
Updating parameters of variational distributions...
Calculating ELB..
ELB=-377.909
ELB improved by 0.0319987

iteration 58
Updating parameters of variational distributions...
Calculating ELB..
ELB=-377.877
ELB improved by 0.0314739

iteration 59
Updating parameters of variational distributions...
Calculating ELB..
ELB=-377.845
ELB improved by 0.0320118

iteration 60
Updating parameters of variational distributions...
Calculating ELB..
ELB=-377.812
ELB improved by 0.0333964

iteration 61
Updating parameters of variational distributions...
Calculating ELB..
ELB=-377.776
ELB improved by 0.0353964

iteration 62
Updating parameters of variational distributions...
Calculating ELB..
ELB=-377.738
ELB improved by 0.0378911

iteration 63
Updating parameters of variational distributions...
Calculating ELB..
ELB=-377.697
ELB improved by 0.0409923

iteration 64
Updating parameters of variational distributions...
Calculating ELB..
ELB=-377.652
ELB improved by 0.0449718

iteration 65
Updating parameters of variational distributions...
Calculating ELB..
ELB=-377.603
ELB improved by 0.0498542

iteration 66
Updating parameters of variational distributions...
Calculating ELB..
ELB=-377.548
ELB improved by 0.0547454

iteration 67
Updating parameters of variational distributions...
Calculating ELB..
ELB=-377.49
ELB improved by 0.0574296

iteration 68
Updating parameters of variational distributions...
Calculating ELB..
ELB=-377.435
ELB improved by 0.0553693

iteration 69
Updating parameters of variational distributions...
Calculating ELB..
ELB=-377.387
ELB improved by 0.0481927

iteration 70
Updating parameters of variational distributions...
Calculating ELB..
ELB=-377.348
ELB improved by 0.0385499

iteration 71
Updating parameters of variational distributions...
Calculating ELB..
ELB=-377.319
ELB improved by 0.0295495

iteration 72
Updating parameters of variational distributions...
Calculating ELB..
ELB=-377.296
ELB improved by 0.0225237

iteration 73
Updating parameters of variational distributions...
Calculating ELB..
ELB=-377.279
ELB improved by 0.0173825

iteration 74
Updating parameters of variational distributions...
Calculating ELB..
ELB=-377.265
ELB improved by 0.0136496

iteration 75
Updating parameters of variational distributions...
Calculating ELB..
ELB=-377.254
ELB improved by 0.0109102

iteration 76
Updating parameters of variational distributions...
Calculating ELB..
ELB=-377.245
ELB improved by 0.0088707

ELB converged
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 24 ]
> 
> proc.time()
   user  system elapsed 
  4.421   0.500   5.149

Example timings

graper.Rcheck/graper-Ex.timings

name	user	system	elapsed
coef.graper	0.085	0.051	0.147
getPIPs	0.077	0.054	0.139
graper	0.132	0.069	0.256
makeExampleData	0.018	0.003	0.023
makeExampleDataWithUnequalGroups	0.046	0.005	0.053
plotELBO	0.410	0.046	0.473
plotGroupPenalties	1.634	0.080	2.151
plotPosterior	1.179	0.063	1.557
predict.graper	2.998	0.327	4.197
print.graper	0.074	0.054	0.168