Multiple platform build/check report for BioC 3.19 - CHECK results for biodbHmdb on palomino3

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo1	Linux (Ubuntu 22.04.3 LTS)	x86_64	4.4.0 (2024-04-24) -- "Puppy Cup"	4755
palomino3	Windows Server 2022 Datacenter	x64	4.4.0 (2024-04-24 ucrt) -- "Puppy Cup"	4489
lconway	macOS 12.7.1 Monterey	x86_64	4.4.0 (2024-04-24) -- "Puppy Cup"	4520
kjohnson3	macOS 13.6.5 Ventura	arm64	4.4.0 (2024-04-24) -- "Puppy Cup"	4466
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

CHECK results for biodbHmdb on palomino3

To the developers/maintainers of the biodbHmdb package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbHmdb.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: biodbHmdb

Version: 1.10.0

Command: F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:biodbHmdb.install-out.txt --library=F:\biocbuild\bbs-3.19-bioc\R\library --no-vignettes --timings biodbHmdb_1.10.0.tar.gz

StartedAt: 2024-06-06 01:03:41 -0400 (Thu, 06 Jun 2024)

EndedAt: 2024-06-06 01:07:08 -0400 (Thu, 06 Jun 2024)

EllapsedTime: 206.5 seconds

RetCode: 0

Status: WARNINGS

CheckDir: biodbHmdb.Rcheck

Warnings: 2

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:biodbHmdb.install-out.txt --library=F:\biocbuild\bbs-3.19-bioc\R\library --no-vignettes --timings biodbHmdb_1.10.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'F:/biocbuild/bbs-3.19-bioc/meat/biodbHmdb.Rcheck'
* using R version 4.4.0 (2024-04-24 ucrt)
* using platform: x86_64-w64-mingw32
* R was compiled by
    gcc.exe (GCC) 13.2.0
    GNU Fortran (GCC) 13.2.0
* running under: Windows Server 2022 x64 (build 20348)
* using session charset: UTF-8
* using option '--no-vignettes'
* checking for file 'biodbHmdb/DESCRIPTION' ... OK
* this is package 'biodbHmdb' version '1.10.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'biodbHmdb' can be installed ... WARNING
Found the following significant warnings:
  EntryMaker.hpp:23:21: warning: 'EntryMaker::accession_tag' will be initialized after [-Wreorder]
  EntryMaker.hpp:22:14: warning:   'bool EntryMaker::closed' [-Wreorder]
  EntryMaker.cpp:5:1: warning:   when initialized here [-Wreorder]
See 'F:/biocbuild/bbs-3.19-bioc/meat/biodbHmdb.Rcheck/00install.out' for details.
* used C++ compiler: 'G__~1.EXE (GCC) 13.2.0'
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: 'zip'
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
  'HmdbMetabolitesConn' 'HmdbMetabolitesEntry' 'hmdbToSqlite'
All user-level objects in a package should have documentation entries.
See chapter 'Writing R documentation files' in the 'Writing R
Extensions' manual.
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files for x64 is not available
File 'F:/biocbuild/bbs-3.19-bioc/R/library/biodbHmdb/libs/x64/biodbHmdb.dll':
  Found '_exit', possibly from '_exit' (C)
  Found 'abort', possibly from 'abort' (C), 'runtime' (Fortran)
  Found 'exit', possibly from 'exit' (C), 'stop' (Fortran)

Compiled code should not call entry points which might terminate R nor
write to stdout/stderr instead of to the console, nor use Fortran I/O
nor system RNGs nor [v]sprintf. The detected symbols are linked into
the code but might come from libraries and not actually be called.

See 'Writing portable packages' in the 'Writing R Extensions' manual.
* checking files in 'vignettes' ... OK
* checking examples ... NONE
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 WARNINGs, 2 NOTEs
See
  'F:/biocbuild/bbs-3.19-bioc/meat/biodbHmdb.Rcheck/00check.log'
for details.

Installation output

biodbHmdb.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD INSTALL biodbHmdb
###
##############################################################################
##############################################################################


* installing to library 'F:/biocbuild/bbs-3.19-bioc/R/library'
* installing *source* package 'biodbHmdb' ...
** using staged installation
** libs
using C++ compiler: 'G__~1.EXE (GCC) 13.2.0'
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.19-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.19-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c EntryMaker.cpp -o EntryMaker.o
In file included from EntryMaker.cpp:1:
EntryMaker.hpp: In constructor 'EntryMaker::EntryMaker()':
EntryMaker.hpp:23:21: warning: 'EntryMaker::accession_tag' will be initialized after [-Wreorder]
   23 |         TagDetector accession_tag;
      |                     ^~~~~~~~~~~~~
EntryMaker.hpp:22:14: warning:   'bool EntryMaker::closed' [-Wreorder]
   22 |         bool closed;
      |              ^~~~~~
EntryMaker.cpp:5:1: warning:   when initialized here [-Wreorder]
    5 | EntryMaker::EntryMaker() :
      | ^~~~~~~~~~
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.19-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.19-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c FileEntryMaker.cpp -o FileEntryMaker.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.19-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.19-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.19-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.19-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c StringEnrtryMaker.cpp -o StringEnrtryMaker.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.19-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.19-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c TagDetector.cpp -o TagDetector.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.19-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.19-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c XmlSplitter.cpp -o XmlSplitter.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.19-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.19-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c extractXmlEntries.cpp -o extractXmlEntries.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.19-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.19-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c test-100-TagDetector.cpp -o test-100-TagDetector.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.19-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.19-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c test-150-StringEntryMaker.cpp -o test-150-StringEntryMaker.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.19-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.19-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c test-200-XmlSplitter.cpp -o test-200-XmlSplitter.o
g++ -std=gnu++17  -I"F:/biocbuild/bbs-3.19-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.19-bioc/R/library/Rcpp/include' -I'F:/biocbuild/bbs-3.19-bioc/R/library/testthat/include'   -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c test-runner.cpp -o test-runner.o
g++ -std=gnu++17 -shared -s -static-libgcc -o biodbHmdb.dll tmp.def EntryMaker.o FileEntryMaker.o RcppExports.o StringEnrtryMaker.o TagDetector.o XmlSplitter.o extractXmlEntries.o test-100-TagDetector.o test-150-StringEntryMaker.o test-200-XmlSplitter.o test-runner.o -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.19-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.19-bioc/R/library/00LOCK-biodbHmdb/00new/biodbHmdb/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
No man pages found in package  'biodbHmdb' 
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbHmdb)

Tests output

biodbHmdb.Rcheck/tests/testthat.Rout


R version 4.4.0 (2024-04-24 ucrt) -- "Puppy Cup"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbHmdb)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbHmdb")
biodb.INFO [2024-06-06 01:06:40.015][biodb::testContext]
biodb.INFO [2024-06-06 01:06:40.019][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-06 01:06:40.020][biodb::testContext] Test context - Tests of independent functions
biodb.INFO [2024-06-06 01:06:40.021][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-06 01:06:40.022][biodb::testContext]
biodb.INFO [2024-06-06 01:06:40.024][biodb::testThat]
biodb.INFO [2024-06-06 01:06:40.025][biodb::testThat] Running test function  test_extractXmlEntries  (" extractXmlEntries() works fine. ").
biodb.INFO [2024-06-06 01:06:40.026][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-06 01:06:40.028][biodb::testThat]
biodb.INFO [2024-06-06 01:06:40.717][biodb::testContext]
biodb.INFO [2024-06-06 01:06:40.718][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-06 01:06:40.719][biodb::testContext] Test context - Generic tests
biodb.INFO [2024-06-06 01:06:40.721][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-06 01:06:40.722][biodb::testContext]
biodb.INFO [2024-06-06 01:06:40.734][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.12.0.
biodb.DEBUG[2024-06-06 01:06:40.744][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.19-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-06-06 01:06:40.942][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-06 01:06:40.943][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-06-06 01:06:40.944][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-06-06 01:06:40.946][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:40.947][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:40.948][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:40.949][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-06-06 01:06:40.965][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-06-06 01:06:40.966][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:40.967][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:40.968][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:40.969][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-06-06 01:06:40.971][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-06-06 01:06:40.972][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:40.973][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:40.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:40.975][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-06-06 01:06:40.976][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-06-06 01:06:40.978][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-06-06 01:06:40.979][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:40.980][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:40.981][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:40.982][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-06-06 01:06:40.983][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-06-06 01:06:40.984][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-06-06 01:06:40.985][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:40.986][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:40.988][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:40.989][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-06-06 01:06:40.990][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-06-06 01:06:40.991][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:40.992][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:40.993][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:40.994][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-06-06 01:06:40.996][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-06-06 01:06:40.997][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-06-06 01:06:40.998][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:40.999][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:41.000][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:41.001][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-06-06 01:06:41.002][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-06-06 01:06:41.004][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:41.005][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:41.006][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:41.007][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-06-06 01:06:41.008][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-06-06 01:06:41.009][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-06-06 01:06:41.011][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:41.012][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:41.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:41.014][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-06-06 01:06:41.015][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-06-06 01:06:41.016][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-06-06 01:06:41.018][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-06-06 01:06:41.019][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-06-06 01:06:41.020][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-06-06 01:06:41.021][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:41.022][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:41.023][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:41.024][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-06-06 01:06:41.026][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-06-06 01:06:41.027][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:41.028][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:41.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:41.030][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-06-06 01:06:41.031][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-06-06 01:06:41.033][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:41.034][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:41.035][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:41.036][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-06-06 01:06:41.037][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-06-06 01:06:41.038][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:41.039][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:41.040][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:41.042][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-06-06 01:06:41.043][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-06-06 01:06:41.044][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:41.045][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:41.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:41.047][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-06-06 01:06:41.049][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-06-06 01:06:41.050][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:41.051][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:41.052][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:41.053][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-06-06 01:06:41.054][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-06-06 01:06:41.058][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-06-06 01:06:41.059][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:41.060][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:41.061][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:41.063][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-06-06 01:06:41.064][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-06-06 01:06:41.065][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-06-06 01:06:41.066][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:41.067][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:41.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:41.072][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-06-06 01:06:41.101][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-06 01:06:41.115][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-06-06 01:06:41.116][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-06 01:06:41.123][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-06 01:06:41.125][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-06 01:06:41.126][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-06 01:06:41.127][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-06 01:06:41.128][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-06 01:06:41.130][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-06-06 01:06:41.131][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-06 01:06:41.132][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-06 01:06:41.133][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-06-06 01:06:41.134][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-06 01:06:41.136][self$setPropertyValue]
biodb.DEBUG[2024-06-06 01:06:41.137][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-06 01:06:41.138][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-06 01:06:41.138][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-06 01:06:41.138][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-06 01:06:41.138][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-06-06 01:06:41.138][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-06-06 01:06:41.139][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-06 01:06:41.140][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-06 01:06:41.141][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-06 01:06:41.143][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-06 01:06:41.144][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-06 01:06:41.145][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-06 01:06:41.146][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-06 01:06:41.147][self$setPropertyValue]
biodb.DEBUG[2024-06-06 01:06:41.148][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-06 01:06:41.149][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-06 01:06:41.151][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-06 01:06:41.152][self$setPropertyValue]
biodb.DEBUG[2024-06-06 01:06:41.153][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-06-06 01:06:41.155][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-06 01:06:41.156][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-06-06 01:06:41.158][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-06 01:06:41.159][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-06 01:06:41.160][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-06 01:06:41.161][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-06 01:06:41.162][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-06 01:06:41.164][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-06 01:06:41.165][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-06-06 01:06:41.166][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-06 01:06:41.167][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-06 01:06:41.168][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-06-06 01:06:41.170][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-06 01:06:41.171][self$setPropertyValue]
biodb.DEBUG[2024-06-06 01:06:41.172][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-06 01:06:41.173][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-06 01:06:41.173][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-06 01:06:41.173][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-06 01:06:41.173][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-06-06 01:06:41.173][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-06-06 01:06:41.174][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-06 01:06:41.176][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-06 01:06:41.177][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-06 01:06:41.178][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-06 01:06:41.179][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-06 01:06:41.180][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-06 01:06:41.181][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-06 01:06:41.182][self$setPropertyValue]
biodb.DEBUG[2024-06-06 01:06:41.184][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-06 01:06:41.185][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-06 01:06:41.186][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-06 01:06:41.187][self$setPropertyValue]
biodb.DEBUG[2024-06-06 01:06:41.188][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-06-06 01:06:41.190][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-06 01:06:41.192][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-06-06 01:06:41.193][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-06 01:06:41.194][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-06 01:06:41.195][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-06 01:06:41.196][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-06 01:06:41.198][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-06 01:06:41.199][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-06 01:06:41.200][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-06-06 01:06:41.201][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-06 01:06:41.202][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-06-06 01:06:41.204][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-06-06 01:06:41.205][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-06 01:06:41.206][self$setPropertyValue]
biodb.DEBUG[2024-06-06 01:06:41.207][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-06 01:06:41.208][self$setPropertyValue]
biodb.DEBUG[2024-06-06 01:06:41.209][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-06 01:06:41.211][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-06 01:06:41.212][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-06 01:06:41.213][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-06 01:06:41.214][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-06 01:06:41.215][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-06 01:06:41.216][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-06 01:06:41.217][self$setPropertyValue]
biodb.DEBUG[2024-06-06 01:06:41.219][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-06 01:06:41.220][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-06 01:06:41.221][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-06 01:06:41.222][self$setPropertyValue]
biodb.DEBUG[2024-06-06 01:06:41.223][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-06-06 01:06:41.225][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-06 01:06:41.226][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-06-06 01:06:41.228][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-06 01:06:41.229][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-06 01:06:41.230][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-06 01:06:41.231][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-06 01:06:41.232][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-06 01:06:41.234][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-06 01:06:41.235][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-06-06 01:06:41.236][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-06 01:06:41.237][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-06-06 01:06:41.238][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-06-06 01:06:41.240][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-06 01:06:41.241][self$setPropertyValue]
biodb.DEBUG[2024-06-06 01:06:41.242][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-06 01:06:41.243][self$setPropertyValue]
biodb.DEBUG[2024-06-06 01:06:41.244][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-06 01:06:41.245][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-06 01:06:41.247][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-06 01:06:41.248][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-06 01:06:41.249][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-06 01:06:41.250][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-06 01:06:41.251][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-06 01:06:41.252][self$setPropertyValue]
biodb.DEBUG[2024-06-06 01:06:41.253][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-06 01:06:41.254][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-06 01:06:41.256][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-06 01:06:41.257][self$setPropertyValue]
biodb.DEBUG[2024-06-06 01:06:41.260][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-06 01:06:41.262][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:41.263][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:41.264][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:41.265][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:41.266][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:41.267][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:41.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:41.269][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:41.270][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:41.271][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:41.272][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:41.274][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:41.275][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:41.276][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:41.277][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:41.278][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:41.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:41.280][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:41.281][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:41.282][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:41.283][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:41.284][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:41.285][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:41.286][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:41.287][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:41.289][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:41.290][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:41.291][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:41.292][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:41.293][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:41.294][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:41.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:41.296][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:41.297][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:41.298][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:41.299][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:41.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:41.302][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:41.303][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:41.304][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:41.305][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:41.306][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:41.307][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:41.308][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:41.309][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:41.310][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:41.311][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:41.313][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:41.314][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:41.315][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:41.316][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:41.317][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:41.318][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:41.319][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:41.320][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:41.321][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:41.322][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:41.323][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:41.324][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:41.326][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:41.327][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:41.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:41.329][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:41.330][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:41.331][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:41.337][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:41.338][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:41.339][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:41.340][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:41.341][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:41.343][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:41.344][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:41.345][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:41.346][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:41.347][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:41.348][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:41.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:41.350][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:41.351][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:41.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:41.353][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:41.354][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:41.355][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:41.356][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:41.358][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:41.359][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:41.360][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:41.361][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-06-06 01:06:41.366][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-06-06 01:06:41.368][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-06-06 01:06:41.371][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-06-06 01:06:41.373][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-06-06 01:06:41.376][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-06-06 01:06:41.378][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-06-06 01:06:41.381][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-06-06 01:06:41.383][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-06-06 01:06:41.386][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-06-06 01:06:41.388][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-06-06 01:06:41.391][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-06-06 01:06:41.393][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-06-06 01:06:41.396][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-06-06 01:06:41.398][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-06-06 01:06:41.401][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-06-06 01:06:41.403][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-06-06 01:06:41.406][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-06-06 01:06:41.408][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-06-06 01:06:41.410][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-06-06 01:06:41.412][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-06-06 01:06:41.414][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-06-06 01:06:41.415][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-06-06 01:06:41.417][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-06-06 01:06:41.418][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-06-06 01:06:41.420][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-06-06 01:06:41.421][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-06-06 01:06:41.423][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-06-06 01:06:41.424][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-06-06 01:06:41.426][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-06-06 01:06:41.428][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-06-06 01:06:41.429][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-06-06 01:06:41.431][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-06-06 01:06:41.432][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-06-06 01:06:41.434][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-06-06 01:06:41.436][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-06-06 01:06:41.437][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-06-06 01:06:41.439][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-06-06 01:06:41.441][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-06-06 01:06:41.442][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-06-06 01:06:41.444][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-06-06 01:06:41.445][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-06-06 01:06:41.447][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-06-06 01:06:41.448][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-06-06 01:06:41.450][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-06-06 01:06:41.452][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-06-06 01:06:41.453][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-06-06 01:06:41.455][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-06-06 01:06:41.456][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-06-06 01:06:41.458][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-06-06 01:06:41.459][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-06-06 01:06:41.461][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-06-06 01:06:41.462][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-06-06 01:06:41.464][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-06-06 01:06:41.466][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-06-06 01:06:41.467][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-06-06 01:06:41.469][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-06-06 01:06:41.470][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-06-06 01:06:41.472][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-06-06 01:06:41.473][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-06-06 01:06:41.475][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-06-06 01:06:41.477][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-06-06 01:06:41.478][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-06-06 01:06:41.480][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-06-06 01:06:41.481][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-06-06 01:06:41.483][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-06-06 01:06:41.484][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-06-06 01:06:41.486][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-06-06 01:06:41.487][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-06-06 01:06:41.489][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-06-06 01:06:41.491][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-06-06 01:06:41.492][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-06-06 01:06:41.494][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-06-06 01:06:41.495][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-06-06 01:06:41.497][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-06-06 01:06:41.498][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-06-06 01:06:41.500][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-06-06 01:06:41.501][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-06-06 01:06:41.503][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-06-06 01:06:41.505][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-06-06 01:06:41.506][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-06-06 01:06:41.508][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-06-06 01:06:41.509][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-06-06 01:06:41.548][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-06-06 01:06:41.551][initialize] This is biodb version 1.12.0.
biodb.DEBUG[2024-06-06 01:06:41.554][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-06 01:06:41.555][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:41.556][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:41.557][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:41.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:41.563][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:41.564][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-06 01:06:41.565][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-06 01:06:41.566][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:41.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:41.568][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:41.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:41.570][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:41.572][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-06 01:06:41.573][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-06 01:06:41.574][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:41.575][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:41.606][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:41.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:41.608][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:41.609][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-06 01:06:41.611][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-06 01:06:41.612][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:41.613][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:41.614][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:41.615][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:41.616][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:41.618][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-06 01:06:41.619][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-06 01:06:41.621][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:41.623][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:41.624][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:41.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:41.627][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:41.629][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-06 01:06:41.631][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-06 01:06:41.632][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:41.634][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:41.635][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:41.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:41.637][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:41.638][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-06 01:06:41.639][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-06 01:06:41.640][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:41.642][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:41.643][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:41.644][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:41.645][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:41.646][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-06 01:06:41.647][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-06 01:06:41.648][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:41.649][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:41.650][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:41.651][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:41.653][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:41.654][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-06 01:06:41.655][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-06 01:06:41.656][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:41.657][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:41.658][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:41.659][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:41.660][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:41.661][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-06 01:06:41.662][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-06 01:06:41.663][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:41.665][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:41.666][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:41.667][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:41.668][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:41.669][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-06 01:06:41.670][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-06 01:06:41.672][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:41.673][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:41.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:41.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:41.676][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:41.677][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-06 01:06:41.678][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-06 01:06:41.679][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:41.681][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:41.682][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:41.683][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:41.684][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:41.685][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-06 01:06:41.686][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-06 01:06:41.687][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:41.688][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:41.689][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:41.690][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:41.692][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:41.693][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-06 01:06:41.694][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-06 01:06:41.695][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:41.696][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:41.697][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:41.698][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:41.699][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:41.700][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-06 01:06:41.701][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-06 01:06:41.702][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:41.704][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:41.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:41.706][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:41.707][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:41.708][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-06 01:06:41.709][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-06 01:06:41.710][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:41.711][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:41.712][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:41.713][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:41.715][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:41.716][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-06 01:06:41.717][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-06 01:06:41.718][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:41.719][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:41.720][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:41.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:41.722][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:41.723][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-06 01:06:41.724][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-06 01:06:41.725][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:41.727][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:41.728][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:41.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:41.732][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.19-bioc/R/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-06-06 01:06:41.765][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-06-06 01:06:41.767][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-06 01:06:41.769][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-06-06 01:06:41.770][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-06 01:06:41.771][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-06 01:06:41.772][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-06-06 01:06:41.774][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-06-06 01:06:41.777][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-06-06 01:06:41.778][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-06 01:06:41.779][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-06-06 01:06:41.781][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-06 01:06:41.782][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-06 01:06:41.783][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-06-06 01:06:41.784][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-06 01:06:41.786][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-06-06 01:06:41.786][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-06-06 01:06:41.786][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-06-06 01:06:41.786][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-06-06 01:06:41.786][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-06-06 01:06:41.786][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-06-06 01:06:41.786][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-06-06 01:06:41.786][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-06-06 01:06:41.786][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-06-06 01:06:41.786][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-06-06 01:06:41.786][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-06-06 01:06:41.786][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-06-06 01:06:41.786][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-06-06 01:06:41.786][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-06-06 01:06:41.786][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-06-06 01:06:41.786][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-06-06 01:06:41.786][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-06-06 01:06:41.786][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-06-06 01:06:41.787][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-06-06 01:06:41.789][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-06 01:06:41.789][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-06-06 01:06:41.789][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-06-06 01:06:41.790][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-06-06 01:06:41.791][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-06 01:06:41.792][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-06 01:06:41.793][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-06 01:06:41.795][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-06 01:06:41.796][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-06 01:06:41.797][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-06 01:06:41.798][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-06-06 01:06:41.798][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-06-06 01:06:41.800][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-06 01:06:41.801][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-06 01:06:41.802][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-06-06 01:06:41.803][self$setPropertyValue]
biodb.DEBUG[2024-06-06 01:06:41.809][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-06-06 01:06:41.811][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-06-06 01:06:41.813][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-06-06 01:06:41.815][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-06-06 01:06:41.816][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-06-06 01:06:41.838][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-06-06 01:06:41.840][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-06-06 01:06:41.849][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-06-06 01:06:41.853][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-06-06 01:06:41.856][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-06 01:06:41.858][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-06 01:06:41.859][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-06-06 01:06:41.861][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-06-06 01:06:41.862][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-06-06 01:06:41.862][self$setPropertyValue] Setting property "urls" to "F:/biocbuild/bbs-3.19-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-06-06 01:06:41.863][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-06 01:06:41.864][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-06 01:06:41.865][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-06-06 01:06:41.866][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-06-06 01:06:41.868][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-06-06 01:06:41.884][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-06-06 01:06:41.885][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-06 01:06:41.886][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-06 01:06:41.888][private$addConnectorRules] Create new rule for URL "F:/biocbuild/bbs-3.19-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-06-06 01:06:41.890][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-06 01:06:41.891][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-06-06 01:06:41.900][biodb::testThat]
biodb.INFO [2024-06-06 01:06:41.901][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2024-06-06 01:06:41.902][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-06 01:06:41.903][biodb::testThat]
biodb.TRACE[2024-06-06 01:06:42.017][loadFileContents] Loaded 1 files from cache: [1]: "F:/biocbuild/bbs-3.19-bioc/R/library/biodbHmdb/testref/entry-hmdb.metabolites-HMDB0000001-content.xml".
biodb.DEBUG[2024-06-06 01:06:42.019][biodb$getFactory()$createEntryFromCo ...] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-06-06 01:06:42.023][biodb$getFactory()$createEntryFromCo ...] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-06-06 01:06:42.070][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-06 01:06:42.071][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-06 01:06:42.073][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-06 01:06:42.080][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:42.081][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:42.082][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:42.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-06 01:06:42.233][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:42.235][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:42.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.237][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.240][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:42.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:42.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.255][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:42.256][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:42.257][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.258][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.292][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:42.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:42.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.300][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-06 01:06:42.302][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-06 01:06:42.304][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.306][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.308][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-06 01:06:42.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-06 01:06:42.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.316][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-06 01:06:42.318][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-06 01:06:42.320][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.322][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.324][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-06 01:06:42.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-06 01:06:42.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.343][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-06 01:06:42.345][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-06 01:06:42.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.348][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.351][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-06 01:06:42.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-06 01:06:42.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.359][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-06 01:06:42.361][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-06 01:06:42.362][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.364][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.366][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-06 01:06:42.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-06 01:06:42.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.374][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-06 01:06:42.376][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-06 01:06:42.378][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.380][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.382][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-06 01:06:42.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-06 01:06:42.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.390][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-06 01:06:42.392][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-06 01:06:42.394][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.395][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.398][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-06 01:06:42.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-06 01:06:42.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.405][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-06 01:06:42.407][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-06 01:06:42.409][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.411][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.413][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-06 01:06:42.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-06 01:06:42.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.421][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-06 01:06:42.423][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-06 01:06:42.425][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.427][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.429][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-06 01:06:42.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-06 01:06:42.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.437][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-06 01:06:42.439][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-06 01:06:42.440][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.442][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.444][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-06 01:06:42.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-06 01:06:42.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.452][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-06 01:06:42.454][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-06 01:06:42.456][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.457][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.460][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-06 01:06:42.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-06 01:06:42.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.468][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-06 01:06:42.469][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-06 01:06:42.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.473][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.475][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-06 01:06:42.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-06 01:06:42.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.483][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-06 01:06:42.485][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-06 01:06:42.487][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.489][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.491][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-06 01:06:42.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-06 01:06:42.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.499][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:42.501][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:42.503][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.504][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.507][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:42.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:42.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.514][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:42.516][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:42.518][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.520][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.522][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:42.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:42.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.530][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-06 01:06:42.532][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-06 01:06:42.534][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.536][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.538][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-06 01:06:42.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-06 01:06:42.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.546][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-06-06 01:06:42.548][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-06 01:06:42.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.552][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.554][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-06-06 01:06:42.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-06 01:06:42.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:42.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:42.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.570][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:42.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:42.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:42.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:42.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.619][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-06 01:06:42.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-06 01:06:42.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.627][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-06 01:06:42.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-06 01:06:42.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.632][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-06 01:06:42.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-06 01:06:42.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.637][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-06 01:06:42.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-06 01:06:42.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.642][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-06 01:06:42.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-06 01:06:42.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.647][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-06 01:06:42.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-06 01:06:42.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.652][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-06 01:06:42.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-06 01:06:42.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.656][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-06 01:06:42.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-06 01:06:42.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.661][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-06 01:06:42.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-06 01:06:42.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.666][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-06 01:06:42.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-06 01:06:42.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.672][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-06 01:06:42.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-06 01:06:42.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.677][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-06 01:06:42.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-06 01:06:42.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.682][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-06 01:06:42.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-06 01:06:42.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.687][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-06 01:06:42.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-06 01:06:42.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.692][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-06 01:06:42.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-06 01:06:42.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.697][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-06 01:06:42.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-06 01:06:42.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.702][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-06 01:06:42.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-06 01:06:42.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.706][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-06 01:06:42.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-06 01:06:42.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.711][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-06 01:06:42.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-06 01:06:42.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.716][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-06 01:06:42.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-06 01:06:42.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.721][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-06 01:06:42.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-06 01:06:42.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.726][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:42.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:42.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.731][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:42.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:42.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.736][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:42.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:42.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.741][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-06 01:06:42.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-06 01:06:42.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.749][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-06 01:06:42.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-06 01:06:42.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.757][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-06 01:06:42.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-06 01:06:42.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.765][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-06 01:06:42.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-06 01:06:42.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.780][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-06 01:06:42.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-06 01:06:42.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.789][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-06 01:06:42.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-06 01:06:42.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.797][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-06 01:06:42.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-06 01:06:42.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.805][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-06 01:06:42.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-06 01:06:42.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.812][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-06 01:06:42.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-06 01:06:42.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.820][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-06 01:06:42.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-06 01:06:42.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.828][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-06 01:06:42.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-06 01:06:42.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.837][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-06 01:06:42.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-06 01:06:42.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.844][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-06 01:06:42.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-06 01:06:42.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.853][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-06 01:06:42.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-06 01:06:42.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.860][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-06 01:06:42.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-06 01:06:42.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.868][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:42.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:42.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.876][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:42.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:42.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.884][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:42.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:42.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.889][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-06 01:06:42.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-06 01:06:42.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.894][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-06 01:06:42.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-06 01:06:42.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.901][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-06 01:06:42.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-06 01:06:42.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.906][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:42.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:42.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.911][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:42.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:42.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.916][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:42.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:42.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.921][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-06 01:06:42.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-06 01:06:42.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.926][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-06 01:06:42.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-06 01:06:42.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.931][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-06 01:06:42.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-06 01:06:42.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.936][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-06-06 01:06:42.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-06 01:06:42.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.941][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-06 01:06:42.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-06 01:06:42.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.946][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-06 01:06:42.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-06 01:06:42.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.950][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-06 01:06:42.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-06 01:06:42.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.955][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-06-06 01:06:42.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-06 01:06:42.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.976][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:42.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:42.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.986][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:42.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:42.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.991][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:42.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:42.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:42.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:42.998][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:43.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:43.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:43.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:43.006][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:43.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:43.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:43.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:43.014][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-06 01:06:43.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-06 01:06:43.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:43.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:43.022][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-06 01:06:43.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-06 01:06:43.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:43.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:43.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:43.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:43.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:43.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:43.034][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-06 01:06:43.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-06 01:06:43.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:43.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:43.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:43.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:43.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:43.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:43.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:43.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:43.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:43.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:43.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:43.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:43.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:43.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:43.053][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:43.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:43.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:43.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:43.058][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:43.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:43.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:43.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:43.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:43.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:43.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:43.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-06 01:06:43.068][biodb$getFactory()$createEntryFromCo ...] Accession numbers: HMDB0000001.
biodb.TRACE[2024-06-06 01:06:43.071][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-06 01:06:43.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-06 01:06:43.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:43.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:43.076][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-06 01:06:43.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-06 01:06:43.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:43.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:43.081][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-06 01:06:43.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-06 01:06:43.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:43.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:43.085][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-06 01:06:43.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-06 01:06:43.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:43.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:43.630][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:43.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:43.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:43.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:43.666][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-06 01:06:43.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-06 01:06:43.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:43.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:43.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:43.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:43.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:43.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:43.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:43.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:43.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:43.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:43.707][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:43.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:43.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:43.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:43.713][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:43.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:43.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:43.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:43.718][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:43.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:43.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:43.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:43.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:43.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:43.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:43.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:43.729][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-06 01:06:43.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-06 01:06:43.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:43.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:43.734][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-06 01:06:43.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-06 01:06:43.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:43.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:43.739][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-06 01:06:43.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-06 01:06:43.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:43.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:43.816][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:43.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:43.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:43.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:43.821][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:43.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:43.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:43.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:43.827][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:43.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:43.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:43.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:43.832][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:43.833][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:43.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:43.835][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:43.837][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:43.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:43.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:43.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:43.904][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:43.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:43.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:43.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:43.910][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:43.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:43.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:43.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:43.915][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:43.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:43.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:43.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:43.920][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:43.921][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:43.922][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:43.923][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:43.924][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:43.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:43.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:43.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:43.940][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-06 01:06:43.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-06 01:06:43.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:43.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:43.945][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-06 01:06:43.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-06 01:06:43.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:43.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:43.950][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-06 01:06:43.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-06 01:06:43.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:43.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:43.955][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-06 01:06:43.956][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-06 01:06:43.957][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:43.958][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:43.959][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-06 01:06:43.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-06 01:06:43.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:43.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.000][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-06 01:06:44.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-06 01:06:44.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.005][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-06 01:06:44.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-06 01:06:44.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.010][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-06 01:06:44.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-06 01:06:44.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.015][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-06 01:06:44.016][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-06 01:06:44.017][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.018][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.020][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-06 01:06:44.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-06 01:06:44.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.035][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-06 01:06:44.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-06 01:06:44.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.040][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-06 01:06:44.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-06 01:06:44.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.045][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-06 01:06:44.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-06 01:06:44.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.050][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-06 01:06:44.051][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-06 01:06:44.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.053][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.055][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-06 01:06:44.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-06 01:06:44.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.097][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-06 01:06:44.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-06 01:06:44.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.102][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-06 01:06:44.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-06 01:06:44.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.107][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-06 01:06:44.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-06 01:06:44.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.112][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-06 01:06:44.114][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-06 01:06:44.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.116][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.117][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-06 01:06:44.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-06 01:06:44.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.133][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:44.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:44.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.138][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:44.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:44.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.143][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:44.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:44.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.148][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:44.150][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:44.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.153][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.155][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:44.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:44.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.196][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:44.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:44.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.202][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:44.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:44.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.207][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:44.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:44.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.212][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:44.213][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:44.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.215][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.217][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:44.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:44.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.238][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-06 01:06:44.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-06 01:06:44.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.243][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-06 01:06:44.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-06 01:06:44.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.248][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-06 01:06:44.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-06 01:06:44.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.253][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-06 01:06:44.254][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-06 01:06:44.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.257][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.258][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-06 01:06:44.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-06 01:06:44.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.288][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-06 01:06:44.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-06 01:06:44.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.293][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-06 01:06:44.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-06 01:06:44.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.298][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-06 01:06:44.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-06 01:06:44.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.303][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-06 01:06:44.304][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-06 01:06:44.305][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.307][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.308][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-06 01:06:44.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-06 01:06:44.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.329][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-06 01:06:44.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-06 01:06:44.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.334][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-06 01:06:44.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-06 01:06:44.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.339][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-06 01:06:44.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-06 01:06:44.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.344][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-06 01:06:44.345][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-06 01:06:44.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.348][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.349][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-06 01:06:44.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-06 01:06:44.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.365][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-06 01:06:44.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-06 01:06:44.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.370][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-06 01:06:44.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-06 01:06:44.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.375][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-06 01:06:44.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-06 01:06:44.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.380][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-06 01:06:44.381][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-06 01:06:44.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.384][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.385][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-06 01:06:44.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-06 01:06:44.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.418][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-06 01:06:44.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-06 01:06:44.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.424][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-06 01:06:44.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-06 01:06:44.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.429][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-06 01:06:44.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-06 01:06:44.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.434][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-06 01:06:44.436][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-06 01:06:44.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.438][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.439][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-06 01:06:44.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-06 01:06:44.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.459][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-06 01:06:44.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-06 01:06:44.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.465][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-06 01:06:44.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-06 01:06:44.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.470][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-06 01:06:44.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-06 01:06:44.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.475][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-06 01:06:44.476][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-06 01:06:44.477][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.478][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.480][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-06 01:06:44.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-06 01:06:44.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.495][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-06 01:06:44.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-06 01:06:44.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.500][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-06 01:06:44.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-06 01:06:44.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.505][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-06 01:06:44.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-06 01:06:44.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.510][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-06 01:06:44.511][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-06 01:06:44.513][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.514][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.515][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-06 01:06:44.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-06 01:06:44.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.530][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-06 01:06:44.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-06 01:06:44.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.541][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-06 01:06:44.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-06 01:06:44.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.545][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-06 01:06:44.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-06 01:06:44.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.551][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-06 01:06:44.552][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-06 01:06:44.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.554][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.556][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-06 01:06:44.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-06 01:06:44.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.666][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-06 01:06:44.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-06 01:06:44.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.671][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-06 01:06:44.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-06 01:06:44.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.676][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-06 01:06:44.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-06 01:06:44.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.681][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-06 01:06:44.682][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-06 01:06:44.683][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.685][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.686][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-06 01:06:44.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-06 01:06:44.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.701][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-06 01:06:44.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-06 01:06:44.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.706][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-06 01:06:44.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-06 01:06:44.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.711][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-06 01:06:44.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-06 01:06:44.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.716][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-06 01:06:44.717][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-06 01:06:44.718][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.719][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.721][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-06 01:06:44.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-06 01:06:44.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.736][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:44.737][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:44.738][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.739][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.746][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-06 01:06:44.748][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-06 01:06:44.749][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.750][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.757][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-06 01:06:44.759][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-06 01:06:44.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.761][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.768][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-06 01:06:44.769][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-06 01:06:44.770][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.771][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.780][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-06 01:06:44.782][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-06 01:06:44.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.786][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.913][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-06 01:06:44.916][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-06 01:06:44.918][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.919][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.938][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-06 01:06:44.940][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-06 01:06:44.941][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.942][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.956][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-06 01:06:44.957][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-06 01:06:44.958][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.959][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:44.971][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:44.973][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:44.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:44.975][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:45.001][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-06 01:06:45.002][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-06 01:06:45.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:45.005][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:45.012][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-06 01:06:45.013][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-06 01:06:45.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:45.015][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:45.042][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-06 01:06:45.043][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-06 01:06:45.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:45.046][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:45.053][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-06 01:06:45.054][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-06 01:06:45.055][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:45.056][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:45.063][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-06 01:06:45.064][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-06 01:06:45.066][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:45.067][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:45.074][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:45.075][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:45.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:45.077][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:45.084][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-06 01:06:45.085][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-06 01:06:45.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:45.088][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:45.095][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:45.096][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:45.097][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:45.098][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:45.105][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-06 01:06:45.106][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-06 01:06:45.108][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:45.109][ef$get] fields variable is a list.
biodb.INFO [2024-06-06 01:06:45.121][biodb::testThat]
biodb.INFO [2024-06-06 01:06:45.122][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-06-06 01:06:45.123][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-06 01:06:45.124][biodb::testThat]
biodb.DEBUG[2024-06-06 01:06:45.137][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2024-06-06 01:06:45.144][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-06-06 01:06:46.110][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-06 01:06:46.113][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-06-06 01:06:46.116][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2024-06-06 01:06:46.117][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-06 01:06:46.133][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2024-06-06 01:06:46.135][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-06-06 01:06:46.165][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-06-06 01:06:46.167][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-06-06 01:06:46.169][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-06 01:06:46.170][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-06 01:06:46.171][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-06 01:06:46.179][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:46.180][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:46.181][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:46.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-06 01:06:46.187][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:46.189][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:46.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.191][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.193][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:46.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:46.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.198][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:46.199][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:46.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.202][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.203][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:46.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:46.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.208][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-06 01:06:46.210][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-06 01:06:46.211][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.212][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.214][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-06 01:06:46.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-06 01:06:46.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.219][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-06 01:06:46.220][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-06 01:06:46.221][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.222][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.224][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-06 01:06:46.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-06 01:06:46.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.230][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-06 01:06:46.231][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-06 01:06:46.232][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.233][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.235][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-06 01:06:46.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-06 01:06:46.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.240][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-06 01:06:46.241][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-06 01:06:46.243][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.244][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.245][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-06 01:06:46.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-06 01:06:46.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.251][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-06 01:06:46.252][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-06 01:06:46.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.255][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.256][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-06 01:06:46.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-06 01:06:46.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.261][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-06 01:06:46.263][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-06 01:06:46.264][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.265][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.267][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-06 01:06:46.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-06 01:06:46.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.272][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-06 01:06:46.273][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-06 01:06:46.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.275][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.277][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-06 01:06:46.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-06 01:06:46.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.282][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-06 01:06:46.283][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-06 01:06:46.285][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.286][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.288][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-06 01:06:46.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-06 01:06:46.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.293][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-06 01:06:46.294][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-06 01:06:46.295][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.296][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.298][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-06 01:06:46.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-06 01:06:46.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.303][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-06 01:06:46.304][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-06 01:06:46.305][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.307][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.308][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-06 01:06:46.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-06 01:06:46.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.314][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-06 01:06:46.315][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-06 01:06:46.316][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.317][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.319][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-06 01:06:46.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-06 01:06:46.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.324][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-06 01:06:46.325][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-06 01:06:46.327][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.328][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.329][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-06 01:06:46.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-06 01:06:46.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.340][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:46.341][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:46.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.344][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.345][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:46.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:46.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.350][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:46.352][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:46.353][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.354][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.356][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:46.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:46.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.361][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-06 01:06:46.362][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-06 01:06:46.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.365][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.366][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-06 01:06:46.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-06 01:06:46.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.371][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-06-06 01:06:46.373][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-06 01:06:46.374][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.375][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.377][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-06-06 01:06:46.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-06 01:06:46.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:46.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:46.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.387][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:46.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:46.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:46.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:46.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.397][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-06 01:06:46.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-06 01:06:46.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.402][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-06 01:06:46.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-06 01:06:46.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.407][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-06 01:06:46.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-06 01:06:46.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.412][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-06 01:06:46.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-06 01:06:46.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.417][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-06 01:06:46.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-06 01:06:46.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.422][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-06 01:06:46.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-06 01:06:46.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.427][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-06 01:06:46.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-06 01:06:46.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.432][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-06 01:06:46.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-06 01:06:46.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.437][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-06 01:06:46.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-06 01:06:46.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.442][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-06 01:06:46.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-06 01:06:46.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.447][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-06 01:06:46.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-06 01:06:46.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.453][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-06 01:06:46.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-06 01:06:46.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.458][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-06 01:06:46.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-06 01:06:46.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.464][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-06 01:06:46.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-06 01:06:46.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.469][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-06 01:06:46.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-06 01:06:46.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.474][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-06 01:06:46.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-06 01:06:46.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.479][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-06 01:06:46.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-06 01:06:46.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.484][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-06 01:06:46.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-06 01:06:46.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.489][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-06 01:06:46.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-06 01:06:46.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.494][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-06 01:06:46.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-06 01:06:46.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.499][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-06 01:06:46.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-06 01:06:46.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.504][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:46.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:46.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.514][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:46.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:46.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.519][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:46.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:46.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.524][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-06 01:06:46.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-06 01:06:46.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.529][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-06 01:06:46.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-06 01:06:46.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.534][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-06 01:06:46.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-06 01:06:46.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.539][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-06 01:06:46.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-06 01:06:46.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.544][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-06 01:06:46.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-06 01:06:46.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.549][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-06 01:06:46.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-06 01:06:46.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.554][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-06 01:06:46.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-06 01:06:46.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.559][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-06 01:06:46.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-06 01:06:46.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.564][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-06 01:06:46.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-06 01:06:46.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.569][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-06 01:06:46.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-06 01:06:46.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.574][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-06 01:06:46.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-06 01:06:46.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.579][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-06 01:06:46.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-06 01:06:46.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.586][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-06 01:06:46.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-06 01:06:46.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.591][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-06 01:06:46.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-06 01:06:46.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.596][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-06 01:06:46.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-06 01:06:46.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.601][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:46.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:46.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.606][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:46.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:46.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.612][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:46.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:46.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.618][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-06 01:06:46.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-06 01:06:46.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.623][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-06 01:06:46.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-06 01:06:46.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.628][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-06 01:06:46.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-06 01:06:46.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.633][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:46.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:46.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.638][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:46.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:46.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.643][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:46.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:46.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.648][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-06 01:06:46.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-06 01:06:46.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.653][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-06 01:06:46.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-06 01:06:46.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.658][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-06 01:06:46.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-06 01:06:46.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.663][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-06-06 01:06:46.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-06 01:06:46.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.668][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-06 01:06:46.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-06 01:06:46.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.675][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-06 01:06:46.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-06 01:06:46.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.679][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-06 01:06:46.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-06 01:06:46.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.687][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-06-06 01:06:46.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-06 01:06:46.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.698][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:46.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:46.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.703][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:46.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:46.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.708][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:46.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:46.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.713][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:46.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:46.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.718][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:46.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:46.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.724][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-06 01:06:46.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-06 01:06:46.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.729][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-06 01:06:46.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-06 01:06:46.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:46.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:46.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.739][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-06 01:06:46.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-06 01:06:46.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:46.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:46.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:46.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:46.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:46.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:46.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:46.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:46.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:46.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:46.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:46.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:46.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-06 01:06:46.775][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2024-06-06 01:06:46.777][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-06-06 01:06:46.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-06-06 01:06:46.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.782][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-06-06 01:06:46.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-06-06 01:06:46.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.788][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-06-06 01:06:46.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-06-06 01:06:46.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-06-06 01:06:46.858][biodb::testThat]
biodb.INFO [2024-06-06 01:06:46.859][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2024-06-06 01:06:46.861][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-06 01:06:46.862][biodb::testThat]
biodb.TRACE[2024-06-06 01:06:46.865][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:46.867][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:46.868][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.869][ef$get] fields variable is a list.
biodb.DEBUG[2024-06-06 01:06:46.871][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "name".
biodb.TRACE[2024-06-06 01:06:46.925][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:46.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:46.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.930][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:46.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:46.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.935][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:46.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:46.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-06 01:06:46.950][function(conn, opt)] With value "1-Methylhistidine".
biodb.DEBUG[2024-06-06 01:06:46.952][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2024-06-06 01:06:46.953][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-06-06 01:06:46.954][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-06-06 01:06:46.957][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-06 01:06:46.959][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-06 01:06:46.961][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-06-06 01:06:46.963][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-06 01:06:46.964][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-06-06 01:06:46.966][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-06-06 01:06:46.967][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-06-06 01:06:46.968][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-06-06 01:06:46.970][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-06-06 01:06:46.971][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-06-06 01:06:46.972][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-06-06 01:06:46.975][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:46.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:46.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.981][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:46.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:46.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.986][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:46.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:46.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:46.991][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:46.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:46.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:46.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-06 01:06:46.996][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-06-06 01:06:46.997][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-06-06 01:06:46.998][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2024-06-06 01:06:47.043][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:47.044][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:47.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:47.047][ef$get] fields variable is a list.
biodb.DEBUG[2024-06-06 01:06:47.048][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "description".
biodb.TRACE[2024-06-06 01:06:47.067][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:47.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:47.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:47.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:47.073][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:47.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:47.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:47.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:47.078][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:47.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:47.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:47.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-06 01:06:47.086][function(conn, opt)] With value "1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.".
biodb.DEBUG[2024-06-06 01:06:47.141][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-06-06 01:06:47.142][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2024-06-06 01:06:47.144][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2024-06-06 01:06:47.157][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-06 01:06:47.159][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-06 01:06:47.161][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-06-06 01:06:47.163][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-06 01:06:47.164][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-06-06 01:06:47.178][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-06-06 01:06:47.179][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-06-06 01:06:47.180][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-06-06 01:06:47.182][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-06-06 01:06:47.183][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-06-06 01:06:47.184][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-06-06 01:06:47.186][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:47.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:47.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:47.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:47.191][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:47.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:47.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:47.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:47.196][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:47.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:47.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:47.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:47.201][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:47.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:47.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:47.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-06 01:06:47.206][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-06-06 01:06:47.207][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-06-06 01:06:47.209][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2024-06-06 01:06:47.279][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:47.281][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:47.283][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:47.284][ef$get] fields variable is a list.
biodb.DEBUG[2024-06-06 01:06:47.287][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "secondary.accessions".
biodb.TRACE[2024-06-06 01:06:47.388][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:47.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:47.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:47.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:47.394][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:47.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:47.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:47.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:47.399][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:47.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:47.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:47.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-06 01:06:47.406][function(conn, opt)] With value "HMDB00001".
biodb.DEBUG[2024-06-06 01:06:47.408][private$doSearchForEntries] fields NAMES = secondary.accessions
biodb.DEBUG[2024-06-06 01:06:47.409][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2024-06-06 01:06:47.410][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2024-06-06 01:06:47.412][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-06 01:06:47.419][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-06 01:06:47.421][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-06-06 01:06:47.423][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-06 01:06:47.424][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-06-06 01:06:47.425][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-06-06 01:06:47.427][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-06-06 01:06:47.428][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-06-06 01:06:47.429][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-06-06 01:06:47.431][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-06-06 01:06:47.432][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-06-06 01:06:47.434][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:47.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:47.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:47.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:47.439][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:47.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:47.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:47.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:47.444][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:47.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:47.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:47.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:47.448][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:47.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:47.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:47.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-06 01:06:47.453][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-06-06 01:06:47.455][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-06-06 01:06:47.456][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.INFO [2024-06-06 01:06:47.513][biodb::testThat]
biodb.INFO [2024-06-06 01:06:47.515][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2024-06-06 01:06:47.516][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-06 01:06:47.517][biodb::testThat]
biodb.TRACE[2024-06-06 01:06:47.561][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:47.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:47.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:47.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:47.566][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:47.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:47.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:47.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:47.571][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:47.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:47.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:47.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-06 01:06:47.588][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2024-06-06 01:06:47.589][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-06-06 01:06:47.590][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-06-06 01:06:47.592][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-06 01:06:47.594][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-06 01:06:47.596][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-06-06 01:06:47.598][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-06 01:06:47.599][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-06-06 01:06:47.601][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-06-06 01:06:47.602][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-06-06 01:06:47.603][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-06-06 01:06:47.605][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-06-06 01:06:47.606][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-06-06 01:06:47.607][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-06-06 01:06:47.609][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:47.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:47.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:47.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:47.614][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:47.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:47.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:47.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:47.619][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:47.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:47.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:47.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:47.624][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:47.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:47.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:47.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-06 01:06:47.629][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-06-06 01:06:47.630][private$doSearchForEntries] COUNT IDS = 1
biodb.INFO [2024-06-06 01:06:47.699][biodb::testThat]
biodb.INFO [2024-06-06 01:06:47.701][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2024-06-06 01:06:47.702][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-06 01:06:47.703][biodb::testThat]
biodb.TRACE[2024-06-06 01:06:47.731][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-06 01:06:47.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-06 01:06:47.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:47.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:47.736][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-06 01:06:47.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-06 01:06:47.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:47.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:47.741][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-06 01:06:47.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-06 01:06:47.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:47.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:47.746][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-06 01:06:47.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-06 01:06:47.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:47.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:47.786][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-06 01:06:47.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-06 01:06:47.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:47.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:47.791][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-06-06 01:06:47.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-06-06 01:06:47.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:47.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:47.796][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-06-06 01:06:47.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-06-06 01:06:47.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:47.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:47.801][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-06-06 01:06:47.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-06-06 01:06:47.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:47.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-06-06 01:06:47.964][biodb::testThat]
biodb.INFO [2024-06-06 01:06:47.966][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-06-06 01:06:47.967][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-06 01:06:47.968][biodb::testThat]
biodb.INFO [2024-06-06 01:06:47.990][biodb::testThat]
biodb.INFO [2024-06-06 01:06:47.991][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-06-06 01:06:47.993][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-06 01:06:47.994][biodb::testThat]
biodb.INFO [2024-06-06 01:06:48.021][biodb::testThat]
biodb.INFO [2024-06-06 01:06:48.023][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2024-06-06 01:06:48.024][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-06 01:06:48.025][biodb::testThat]
biodb.DEBUG[2024-06-06 01:06:48.035][function(conn, opt)] Trying to download "http://www.hmdb.ca/metabolites/HMDB0000001".
biodb.DEBUG[2024-06-06 01:06:50.892][getUrlContent] Use base::url() for downloading content of URL http://www.hmdb.ca/metabolites/HMDB0000001.
biodb.INFO [2024-06-06 01:06:52.391][biodb::testThat]
biodb.INFO [2024-06-06 01:06:52.392][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2024-06-06 01:06:52.393][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-06 01:06:52.394][biodb::testThat]
biodb.DEBUG[2024-06-06 01:06:52.632][getUrlContent] Use base::url() for downloading content of URL http://www.hmdb.ca/structures/HMDB0000001/image.png.
biodb.TRACE[2024-06-06 01:06:52.938][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:52.940][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:52.941][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:52.942][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:52.944][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:52.945][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:52.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:52.947][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:52.949][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:52.950][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:52.951][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:52.952][ef$get] fields variable is a list.
biodb.INFO [2024-06-06 01:06:52.954][biodb::testThat]
biodb.INFO [2024-06-06 01:06:52.955][biodb::testThat] Running test function  test.wrong.entry  (" Wrong entry gives NULL ").
biodb.INFO [2024-06-06 01:06:52.957][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-06 01:06:52.958][biodb::testThat]
biodb.DEBUG[2024-06-06 01:06:52.960][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2024-06-06 01:06:53.001][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-06-06 01:06:53.004][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-06 01:06:53.006][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-06-06 01:06:53.049][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2024-06-06 01:06:53.051][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-06 01:06:53.053][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-06 01:06:53.054][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-06-06 01:06:53.056][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-06 01:06:53.058][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-06-06 01:06:53.059][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-06-06 01:06:53.061][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-06 01:06:53.062][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-06 01:06:53.063][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-06 01:06:53.104][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:53.106][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:53.107][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:53.108][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-06 01:06:53.110][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-06 01:06:53.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-06 01:06:53.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:53.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:53.115][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-06 01:06:53.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-06 01:06:53.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:53.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:53.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:53.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:53.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:53.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:53.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:53.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:53.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:53.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:53.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:53.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:53.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:53.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:53.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:53.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:53.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:53.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:53.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:53.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:53.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:53.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:53.157][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:53.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:53.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:53.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-06 01:06:53.162][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2024-06-06 01:06:53.164][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2024-06-06 01:06:53.234][biodb::testThat]
biodb.INFO [2024-06-06 01:06:53.235][biodb::testThat] Running test function  test.wrong.entry.among.good.ones  (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2024-06-06 01:06:53.237][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-06 01:06:53.238][biodb::testThat]
biodb.DEBUG[2024-06-06 01:06:53.247][function(conn, opt)] IDS: [2]: "WRONGB, HMDB0000001"
biodb.DEBUG[2024-06-06 01:06:53.249][private$loadEntries] Creating entries from ids [1]: "WRONGB".
biodb.DEBUG[2024-06-06 01:06:53.250][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-06-06 01:06:53.252][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-06 01:06:53.254][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-06-06 01:06:53.256][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGB".
biodb.TRACE[2024-06-06 01:06:53.258][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-06-06 01:06:53.259][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-06-06 01:06:53.261][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-06-06 01:06:53.263][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-06 01:06:53.264][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-06-06 01:06:53.266][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-06-06 01:06:53.267][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-06 01:06:53.268][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-06 01:06:53.269][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-06 01:06:53.319][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:53.321][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:53.322][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:53.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-06 01:06:53.330][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-06 01:06:53.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-06 01:06:53.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:53.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:53.336][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-06 01:06:53.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-06 01:06:53.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:53.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:53.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:53.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:53.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:53.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:53.346][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:53.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:53.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:53.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:53.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:53.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:53.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:53.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:53.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:53.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:53.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:53.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:53.361][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:53.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:53.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:53.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:53.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:53.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:53.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:53.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-06 01:06:53.370][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2024-06-06 01:06:53.372][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2024-06-06 01:06:53.373][function(conn, opt)] Entries: [2]: "NULL, <environment>"
biodb.INFO [2024-06-06 01:06:53.412][biodb::testThat]
biodb.INFO [2024-06-06 01:06:53.414][biodb::testThat] Running test function  test.peak.table  (" The peak table is correct. ").
biodb.INFO [2024-06-06 01:06:53.415][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-06 01:06:53.416][biodb::testThat]
biodb.INFO [2024-06-06 01:06:53.444][biodb::testThat]
biodb.INFO [2024-06-06 01:06:53.445][biodb::testThat] Running test function  test.nb.entries  (" Nb entries is positive. ").
biodb.INFO [2024-06-06 01:06:53.446][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-06 01:06:53.447][biodb::testThat]
biodb.DEBUG[2024-06-06 01:06:53.450][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-06 01:06:53.452][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-06 01:06:53.454][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-06-06 01:06:53.456][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-06 01:06:53.457][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-06-06 01:06:53.459][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-06-06 01:06:53.460][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-06-06 01:06:53.461][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-06-06 01:06:53.463][private$doGetEntryIds] COUNT IDS = 2
biodb.INFO [2024-06-06 01:06:53.476][biodb::testThat]
biodb.INFO [2024-06-06 01:06:53.477][biodb::testThat] Running test function  test.entry.ids  (" We can get a list of entry ids. ").
biodb.INFO [2024-06-06 01:06:53.478][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-06 01:06:53.479][biodb::testThat]
biodb.DEBUG[2024-06-06 01:06:53.482][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-06 01:06:53.484][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-06 01:06:53.486][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-06-06 01:06:53.488][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-06 01:06:53.489][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-06-06 01:06:53.491][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-06-06 01:06:53.498][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-06-06 01:06:53.500][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-06-06 01:06:53.501][private$doGetEntryIds] COUNT IDS = 2
biodb.TRACE[2024-06-06 01:06:53.537][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:53.539][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:53.540][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:53.541][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:53.542][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:53.544][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:53.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:53.546][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:53.547][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:53.548][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:53.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:53.551][ef$get] fields variable is a list.
biodb.INFO [2024-06-06 01:06:53.552][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-06-06 01:06:53.554][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-06-06 01:06:53.561][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-06-06 01:06:53.562][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-06-06 01:06:53.564][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-06 01:06:53.565][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-06 01:06:53.566][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:53.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:53.568][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:53.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-06-06 01:06:53.575][biodb::testContext]
biodb.INFO [2024-06-06 01:06:53.576][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-06 01:06:53.577][biodb::testContext] Test context - Test retrieval of entries
biodb.INFO [2024-06-06 01:06:53.578][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-06 01:06:53.579][biodb::testContext]
biodb.INFO [2024-06-06 01:06:53.623][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.12.0.
biodb.DEBUG[2024-06-06 01:06:53.626][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.19-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-06-06 01:06:53.782][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-06 01:06:53.784][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-06-06 01:06:53.785][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-06-06 01:06:53.787][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:53.788][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:53.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:53.791][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-06-06 01:06:53.792][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-06-06 01:06:53.793][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:53.794][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:53.795][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:53.797][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-06-06 01:06:53.798][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-06-06 01:06:53.799][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:53.801][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:53.802][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:53.803][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-06-06 01:06:53.804][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-06-06 01:06:53.805][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-06-06 01:06:53.807][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:53.808][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:53.809][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:53.811][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-06-06 01:06:53.813][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-06-06 01:06:53.814][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-06-06 01:06:53.815][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:53.817][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:53.818][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:53.819][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-06-06 01:06:53.820][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-06-06 01:06:53.822][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:53.823][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:53.824][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:53.825][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-06-06 01:06:53.826][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-06-06 01:06:53.828][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-06-06 01:06:53.829][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:53.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:53.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:53.832][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-06-06 01:06:53.833][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-06-06 01:06:53.835][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:53.836][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:53.837][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:53.838][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-06-06 01:06:53.839][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-06-06 01:06:53.841][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-06-06 01:06:53.842][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:53.843][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:53.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:53.845][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-06-06 01:06:53.846][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-06-06 01:06:53.848][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-06-06 01:06:53.849][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-06-06 01:06:53.855][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-06-06 01:06:53.858][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-06-06 01:06:53.859][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:53.860][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:53.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:53.862][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-06-06 01:06:53.864][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-06-06 01:06:53.865][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:53.866][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:53.867][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:53.868][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-06-06 01:06:53.870][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-06-06 01:06:53.871][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:53.872][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:53.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:53.874][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-06-06 01:06:53.876][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-06-06 01:06:53.877][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:53.878][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:53.879][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:53.880][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-06-06 01:06:53.882][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-06-06 01:06:53.883][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:53.884][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:53.885][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:53.886][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-06-06 01:06:53.888][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-06-06 01:06:53.889][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:53.890][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:53.891][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:53.893][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-06-06 01:06:53.894][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-06-06 01:06:53.898][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-06-06 01:06:53.899][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:53.900][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:53.901][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:53.902][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-06-06 01:06:53.904][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-06-06 01:06:53.905][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-06-06 01:06:53.906][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:53.907][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:53.910][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:53.911][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-06-06 01:06:53.913][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-06 01:06:53.915][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-06-06 01:06:53.916][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-06 01:06:53.917][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-06 01:06:53.919][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-06 01:06:53.920][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-06 01:06:53.921][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-06 01:06:53.922][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-06 01:06:53.924][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-06-06 01:06:53.925][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-06 01:06:53.926][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-06 01:06:53.927][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-06-06 01:06:53.929][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-06 01:06:53.930][self$setPropertyValue]
biodb.DEBUG[2024-06-06 01:06:53.931][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-06 01:06:53.932][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-06 01:06:53.932][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-06 01:06:53.932][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-06 01:06:53.932][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-06-06 01:06:53.932][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-06-06 01:06:53.934][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-06 01:06:53.935][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-06 01:06:53.936][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-06 01:06:53.937][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-06 01:06:53.939][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-06 01:06:53.940][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-06 01:06:53.941][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-06 01:06:53.942][self$setPropertyValue]
biodb.DEBUG[2024-06-06 01:06:53.943][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-06 01:06:53.944][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-06 01:06:53.945][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-06 01:06:53.947][self$setPropertyValue]
biodb.DEBUG[2024-06-06 01:06:53.948][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-06-06 01:06:53.950][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-06 01:06:53.951][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-06-06 01:06:53.953][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-06 01:06:53.954][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-06 01:06:53.955][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-06 01:06:53.956][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-06 01:06:53.957][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-06 01:06:53.959][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-06 01:06:53.960][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-06-06 01:06:53.961][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-06 01:06:53.962][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-06 01:06:53.964][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-06-06 01:06:53.965][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-06 01:06:53.966][self$setPropertyValue]
biodb.DEBUG[2024-06-06 01:06:53.967][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-06 01:06:53.968][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-06 01:06:53.968][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-06 01:06:53.968][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-06 01:06:53.968][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-06-06 01:06:53.968][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-06-06 01:06:53.970][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-06 01:06:53.971][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-06 01:06:53.972][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-06 01:06:53.973][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-06 01:06:53.974][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-06 01:06:53.976][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-06 01:06:53.977][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-06 01:06:53.978][self$setPropertyValue]
biodb.DEBUG[2024-06-06 01:06:53.979][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-06 01:06:53.981][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-06 01:06:53.982][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-06 01:06:53.983][self$setPropertyValue]
biodb.DEBUG[2024-06-06 01:06:53.984][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-06-06 01:06:53.986][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-06 01:06:53.988][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-06-06 01:06:53.994][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-06 01:06:53.995][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-06 01:06:53.997][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-06 01:06:53.998][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-06 01:06:53.999][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-06 01:06:54.000][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-06 01:06:54.001][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-06-06 01:06:54.003][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-06 01:06:54.004][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-06-06 01:06:54.005][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-06-06 01:06:54.007][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-06 01:06:54.008][self$setPropertyValue]
biodb.DEBUG[2024-06-06 01:06:54.009][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-06 01:06:54.010][self$setPropertyValue]
biodb.DEBUG[2024-06-06 01:06:54.011][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-06 01:06:54.013][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-06 01:06:54.014][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-06 01:06:54.015][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-06 01:06:54.016][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-06 01:06:54.017][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-06 01:06:54.018][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-06 01:06:54.020][self$setPropertyValue]
biodb.DEBUG[2024-06-06 01:06:54.021][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-06 01:06:54.023][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-06 01:06:54.024][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-06 01:06:54.026][self$setPropertyValue]
biodb.DEBUG[2024-06-06 01:06:54.027][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-06-06 01:06:54.029][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-06 01:06:54.030][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-06-06 01:06:54.031][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-06 01:06:54.033][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-06 01:06:54.034][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-06 01:06:54.035][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-06 01:06:54.036][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-06 01:06:54.038][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-06 01:06:54.039][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-06-06 01:06:54.040][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-06 01:06:54.041][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-06-06 01:06:54.043][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-06-06 01:06:54.044][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-06 01:06:54.045][self$setPropertyValue]
biodb.DEBUG[2024-06-06 01:06:54.046][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-06 01:06:54.047][self$setPropertyValue]
biodb.DEBUG[2024-06-06 01:06:54.049][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-06 01:06:54.050][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-06 01:06:54.051][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-06 01:06:54.052][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-06 01:06:54.053][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-06 01:06:54.054][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-06 01:06:54.056][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-06 01:06:54.057][self$setPropertyValue]
biodb.DEBUG[2024-06-06 01:06:54.058][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-06 01:06:54.059][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-06 01:06:54.060][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-06 01:06:54.062][self$setPropertyValue]
biodb.DEBUG[2024-06-06 01:06:54.063][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-06 01:06:54.064][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:54.065][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:54.066][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:54.068][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:54.069][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:54.070][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:54.071][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:54.072][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:54.073][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:54.074][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:54.075][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:54.077][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:54.078][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:54.079][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:54.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:54.081][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:54.082][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:54.083][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:54.084][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:54.085][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:54.086][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:54.088][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:54.089][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:54.090][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:54.091][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:54.092][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:54.093][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:54.094][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:54.095][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:54.096][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:54.097][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:54.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:54.100][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:54.101][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:54.102][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:54.104][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:54.105][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:54.106][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:54.108][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:54.109][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:54.110][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:54.112][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:54.113][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:54.114][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:54.115][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:54.116][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:54.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:54.118][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:54.119][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:54.121][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:54.122][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:54.128][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:54.129][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:54.130][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:54.131][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:54.133][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:54.134][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:54.135][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:54.136][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:54.138][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:54.139][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:54.140][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:54.141][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:54.143][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:54.144][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:54.146][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:54.147][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:54.149][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:54.150][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:54.151][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:54.152][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:54.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:54.155][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:54.156][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:54.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:54.159][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:54.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:54.162][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:54.163][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:54.164][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:54.165][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:54.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:54.168][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:54.169][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:54.170][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:54.171][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:54.172][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:54.173][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-06-06 01:06:54.175][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-06-06 01:06:54.177][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-06-06 01:06:54.179][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-06-06 01:06:54.181][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-06-06 01:06:54.183][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-06-06 01:06:54.185][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-06-06 01:06:54.186][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-06-06 01:06:54.188][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-06-06 01:06:54.190][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-06-06 01:06:54.191][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-06-06 01:06:54.193][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-06-06 01:06:54.194][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-06-06 01:06:54.196][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-06-06 01:06:54.197][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-06-06 01:06:54.199][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-06-06 01:06:54.201][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-06-06 01:06:54.202][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-06-06 01:06:54.204][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-06-06 01:06:54.205][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-06-06 01:06:54.207][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-06-06 01:06:54.209][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-06-06 01:06:54.210][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-06-06 01:06:54.212][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-06-06 01:06:54.213][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-06-06 01:06:54.215][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-06-06 01:06:54.216][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-06-06 01:06:54.218][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-06-06 01:06:54.220][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-06-06 01:06:54.221][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-06-06 01:06:54.223][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-06-06 01:06:54.224][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-06-06 01:06:54.226][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-06-06 01:06:54.227][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-06-06 01:06:54.229][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-06-06 01:06:54.230][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-06-06 01:06:54.232][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-06-06 01:06:54.234][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-06-06 01:06:54.235][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-06-06 01:06:54.237][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-06-06 01:06:54.238][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-06-06 01:06:54.240][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-06-06 01:06:54.242][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-06-06 01:06:54.243][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-06-06 01:06:54.245][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-06-06 01:06:54.246][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-06-06 01:06:54.248][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-06-06 01:06:54.250][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-06-06 01:06:54.256][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-06-06 01:06:54.258][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-06-06 01:06:54.260][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-06-06 01:06:54.262][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-06-06 01:06:54.263][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-06-06 01:06:54.265][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-06-06 01:06:54.266][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-06-06 01:06:54.268][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-06-06 01:06:54.270][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-06-06 01:06:54.271][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-06-06 01:06:54.273][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-06-06 01:06:54.274][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-06-06 01:06:54.276][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-06-06 01:06:54.278][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-06-06 01:06:54.279][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-06-06 01:06:54.281][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-06-06 01:06:54.282][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-06-06 01:06:54.284][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-06-06 01:06:54.286][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-06-06 01:06:54.287][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-06-06 01:06:54.289][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-06-06 01:06:54.290][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-06-06 01:06:54.292][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-06-06 01:06:54.293][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-06-06 01:06:54.295][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-06-06 01:06:54.297][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-06-06 01:06:54.298][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-06-06 01:06:54.300][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-06-06 01:06:54.301][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-06-06 01:06:54.303][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-06-06 01:06:54.305][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-06-06 01:06:54.306][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-06-06 01:06:54.308][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-06-06 01:06:54.309][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-06-06 01:06:54.311][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-06-06 01:06:54.313][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-06-06 01:06:54.315][initialize] This is biodb version 1.12.0.
biodb.DEBUG[2024-06-06 01:06:54.317][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-06 01:06:54.318][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:54.319][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:54.320][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:54.321][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:54.322][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:54.323][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-06 01:06:54.324][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-06 01:06:54.325][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:54.327][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:54.328][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:54.329][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:54.330][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:54.331][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-06 01:06:54.332][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-06 01:06:54.333][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:54.334][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:54.335][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:54.337][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:54.338][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:54.339][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-06 01:06:54.340][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-06 01:06:54.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:54.342][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:54.343][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:54.344][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:54.345][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:54.347][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-06 01:06:54.348][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-06 01:06:54.349][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:54.350][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:54.351][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:54.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:54.353][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:54.354][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-06 01:06:54.355][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-06 01:06:54.356][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:54.357][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:54.359][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:54.360][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:54.361][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:54.362][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-06 01:06:54.363][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-06 01:06:54.364][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:54.365][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:54.366][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:54.367][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:54.369][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:54.370][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-06 01:06:54.371][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-06 01:06:54.372][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:54.373][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:54.374][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:54.380][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:54.382][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:54.383][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-06 01:06:54.384][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-06 01:06:54.386][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:54.387][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:54.388][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:54.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:54.390][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:54.391][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-06 01:06:54.392][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-06 01:06:54.394][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:54.395][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:54.396][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:54.397][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:54.398][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:54.399][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-06 01:06:54.400][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-06 01:06:54.401][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:54.402][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:54.403][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:54.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:54.406][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:54.407][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-06 01:06:54.408][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-06 01:06:54.409][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:54.410][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:54.411][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:54.412][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:54.414][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:54.415][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-06 01:06:54.416][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-06 01:06:54.417][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:54.418][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:54.419][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:54.421][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:54.422][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:54.423][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-06 01:06:54.424][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-06 01:06:54.425][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:54.426][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:54.427][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:54.428][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:54.429][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:54.431][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-06 01:06:54.432][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-06 01:06:54.433][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:54.434][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:54.435][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:54.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:54.437][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:54.438][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-06 01:06:54.439][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-06 01:06:54.440][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:54.442][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:54.443][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:54.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:54.445][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:54.446][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-06 01:06:54.447][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-06 01:06:54.448][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:54.449][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:54.450][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:54.452][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:54.453][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:54.454][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-06 01:06:54.455][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-06 01:06:54.456][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:54.457][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:54.458][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:54.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:54.462][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.19-bioc/R/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-06-06 01:06:54.488][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-06-06 01:06:54.490][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-06 01:06:54.491][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-06-06 01:06:54.493][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-06 01:06:54.494][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-06 01:06:54.495][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-06-06 01:06:54.496][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-06-06 01:06:54.498][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-06-06 01:06:54.499][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-06 01:06:54.500][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-06-06 01:06:54.501][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-06 01:06:54.502][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-06 01:06:54.504][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-06-06 01:06:54.505][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-06 01:06:54.506][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-06-06 01:06:54.506][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-06-06 01:06:54.506][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-06-06 01:06:54.506][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-06-06 01:06:54.506][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-06-06 01:06:54.506][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-06-06 01:06:54.506][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-06-06 01:06:54.506][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-06-06 01:06:54.506][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-06-06 01:06:54.506][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-06-06 01:06:54.506][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-06-06 01:06:54.506][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-06-06 01:06:54.506][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-06-06 01:06:54.506][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-06-06 01:06:54.506][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-06-06 01:06:54.506][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-06-06 01:06:54.506][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-06-06 01:06:54.506][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-06-06 01:06:54.508][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-06-06 01:06:54.509][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-06 01:06:54.509][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-06-06 01:06:54.509][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-06-06 01:06:54.510][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-06-06 01:06:54.511][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-06 01:06:54.512][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-06 01:06:54.514][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-06 01:06:54.515][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-06 01:06:54.516][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-06 01:06:54.517][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-06 01:06:54.518][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-06-06 01:06:54.518][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-06-06 01:06:54.520][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-06 01:06:54.521][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-06 01:06:54.522][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-06-06 01:06:54.523][self$setPropertyValue]
biodb.DEBUG[2024-06-06 01:06:54.525][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-06-06 01:06:54.526][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-06-06 01:06:54.528][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-06-06 01:06:54.530][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-06-06 01:06:54.537][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-06-06 01:06:54.540][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-06-06 01:06:54.542][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-06-06 01:06:54.543][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-06-06 01:06:54.545][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-06-06 01:06:54.546][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-06 01:06:54.548][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-06 01:06:54.549][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-06-06 01:06:54.550][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-06-06 01:06:54.552][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-06-06 01:06:54.552][self$setPropertyValue] Setting property "urls" to "F:/biocbuild/bbs-3.19-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-06-06 01:06:54.553][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-06 01:06:54.554][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-06 01:06:54.555][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-06-06 01:06:54.556][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-06-06 01:06:54.558][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-06-06 01:06:54.560][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-06-06 01:06:54.561][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-06 01:06:54.562][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-06 01:06:54.564][private$addConnectorRules] Create new rule for URL "F:/biocbuild/bbs-3.19-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-06-06 01:06:54.566][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-06 01:06:54.567][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-06-06 01:06:54.569][biodb::testThat]
biodb.INFO [2024-06-06 01:06:54.570][biodb::testThat] Running test function  test.hmdbmetabolite.nbentries  (" HMDB metabolite returns enough entries. ").
biodb.INFO [2024-06-06 01:06:54.571][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-06 01:06:54.572][biodb::testThat]
biodb.DEBUG[2024-06-06 01:06:54.578][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-06 01:06:54.580][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-06 01:06:54.582][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-06-06 01:06:54.584][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-06 01:06:54.585][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-06-06 01:06:54.586][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-06-06 01:06:54.588][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-06-06 01:06:54.589][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-06-06 01:06:54.590][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-06-06 01:06:54.594][conn$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2024-06-06 01:06:54.632][biodb::testThat]
biodb.INFO [2024-06-06 01:06:54.633][biodb::testThat] Running test function  test.old.accession  (" We can retrieve entries using old accession numbers. ").
biodb.INFO [2024-06-06 01:06:54.634][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-06 01:06:54.636][biodb::testThat]
biodb.DEBUG[2024-06-06 01:06:54.638][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2024-06-06 01:06:54.639][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-06-06 01:06:54.641][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-06 01:06:54.643][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-06-06 01:06:54.646][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2024-06-06 01:06:54.647][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-06 01:06:54.662][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2024-06-06 01:06:54.664][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-06-06 01:06:54.665][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-06-06 01:06:54.667][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-06-06 01:06:54.668][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-06 01:06:54.669][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-06 01:06:54.671][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-06 01:06:54.705][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:54.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:54.708][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:54.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-06 01:06:54.713][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:54.714][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:54.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:54.717][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:54.718][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:54.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:54.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:54.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:54.723][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:54.725][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:54.726][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:54.727][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:54.728][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:54.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:54.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:54.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:54.734][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-06 01:06:54.735][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-06 01:06:54.736][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:54.737][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:54.739][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-06 01:06:54.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-06 01:06:54.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:54.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:54.749][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-06 01:06:54.751][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-06 01:06:54.752][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:54.753][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:54.755][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-06 01:06:54.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-06 01:06:54.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:54.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:54.760][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-06 01:06:54.761][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-06 01:06:54.762][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:54.763][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:54.765][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-06 01:06:54.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-06 01:06:54.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:54.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:54.770][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-06 01:06:54.772][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-06 01:06:54.773][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:54.774][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:54.775][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-06 01:06:54.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-06 01:06:54.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:54.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:54.781][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-06 01:06:54.782][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-06 01:06:54.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:54.784][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:54.786][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-06 01:06:54.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-06 01:06:54.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:54.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:54.791][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-06 01:06:54.792][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-06 01:06:54.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:54.795][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:54.796][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-06 01:06:54.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-06 01:06:54.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:54.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:54.801][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-06 01:06:54.803][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-06 01:06:54.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:54.805][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:54.806][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-06 01:06:54.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-06 01:06:54.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:54.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:54.812][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-06 01:06:54.813][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-06 01:06:54.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:54.815][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:54.817][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-06 01:06:54.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-06 01:06:54.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:54.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:54.822][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-06 01:06:54.823][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-06 01:06:54.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:54.826][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:54.827][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-06 01:06:54.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-06 01:06:54.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:54.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:54.832][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-06 01:06:54.834][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-06 01:06:54.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:54.836][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:54.837][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-06 01:06:54.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-06 01:06:54.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:54.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:54.843][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-06 01:06:54.844][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-06 01:06:54.845][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:54.846][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:54.848][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-06 01:06:54.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-06 01:06:54.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:54.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:54.853][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-06 01:06:54.854][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-06 01:06:54.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:54.856][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:54.858][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-06 01:06:54.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-06 01:06:54.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:54.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:54.863][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:54.864][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:54.866][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:54.867][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:54.868][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:54.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:54.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:54.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:54.873][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:54.875][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:54.876][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:54.882][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:54.884][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:54.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:54.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:54.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:54.889][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-06 01:06:54.890][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-06 01:06:54.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:54.893][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:54.894][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-06 01:06:54.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-06 01:06:54.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:54.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:54.900][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-06-06 01:06:54.901][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-06 01:06:54.902][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:54.903][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:54.905][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-06-06 01:06:54.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-06 01:06:54.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:54.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:54.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:54.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:54.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:54.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:54.915][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:54.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:54.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:54.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:54.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:54.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:54.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:54.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:54.925][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-06 01:06:54.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-06 01:06:54.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:54.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:54.930][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-06 01:06:54.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-06 01:06:54.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:54.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:54.935][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-06 01:06:54.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-06 01:06:54.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:54.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:54.940][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-06 01:06:54.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-06 01:06:54.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:54.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:54.945][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-06 01:06:54.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-06 01:06:54.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:54.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:54.950][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-06 01:06:54.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-06 01:06:54.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:54.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:54.955][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-06 01:06:54.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-06 01:06:54.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:54.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:54.960][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-06 01:06:54.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-06 01:06:54.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:54.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:54.964][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-06 01:06:54.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-06 01:06:54.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:54.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:54.969][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-06 01:06:54.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-06 01:06:54.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:54.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:54.974][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-06 01:06:54.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-06 01:06:54.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:54.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:54.979][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-06 01:06:54.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-06 01:06:54.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:54.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:54.984][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-06 01:06:54.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-06 01:06:54.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:54.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:54.989][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-06 01:06:54.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-06 01:06:54.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:54.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:54.994][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-06 01:06:54.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-06 01:06:54.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:54.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:54.999][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-06 01:06:55.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-06 01:06:55.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:55.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:55.004][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-06 01:06:55.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-06 01:06:55.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:55.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:55.014][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-06 01:06:55.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-06 01:06:55.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:55.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:55.019][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-06 01:06:55.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-06 01:06:55.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:55.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:55.024][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-06 01:06:55.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-06 01:06:55.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:55.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:55.029][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-06 01:06:55.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-06 01:06:55.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:55.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:55.034][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:55.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:55.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:55.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:55.039][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:55.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:55.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:55.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:55.044][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:55.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:55.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:55.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:55.049][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-06 01:06:55.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-06 01:06:55.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:55.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:55.054][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-06 01:06:55.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-06 01:06:55.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:55.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:55.059][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-06 01:06:55.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-06 01:06:55.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:55.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:55.064][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-06 01:06:55.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-06 01:06:55.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:55.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:55.068][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-06 01:06:55.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-06 01:06:55.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:55.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:55.073][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-06 01:06:55.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-06 01:06:55.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:55.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:55.078][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-06 01:06:55.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-06 01:06:55.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:55.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:55.083][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-06 01:06:55.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-06 01:06:55.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:55.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:55.088][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-06 01:06:55.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-06 01:06:55.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:55.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:55.093][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-06 01:06:55.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-06 01:06:55.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:55.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:55.098][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-06 01:06:55.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-06 01:06:55.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:55.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:55.103][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-06 01:06:55.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-06 01:06:55.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:55.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:55.108][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-06 01:06:55.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-06 01:06:55.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:55.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:55.113][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-06 01:06:55.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-06 01:06:55.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:55.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:55.118][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-06 01:06:55.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-06 01:06:55.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:55.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:55.123][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:55.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:55.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:55.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:55.128][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:55.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:55.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:55.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:55.133][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:55.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:55.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:55.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:55.142][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-06 01:06:55.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-06 01:06:55.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:55.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:55.148][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-06 01:06:55.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-06 01:06:55.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:55.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:55.153][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-06 01:06:55.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-06 01:06:55.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:55.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:55.158][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:55.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:55.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:55.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:55.163][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:55.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:55.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:55.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:55.168][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:55.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:55.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:55.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:55.173][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-06 01:06:55.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-06 01:06:55.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:55.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:55.178][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-06 01:06:55.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-06 01:06:55.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:55.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:55.183][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-06 01:06:55.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-06 01:06:55.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:55.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:55.188][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-06-06 01:06:55.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-06 01:06:55.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:55.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:55.193][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-06 01:06:55.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-06 01:06:55.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:55.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:55.197][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-06 01:06:55.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-06 01:06:55.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:55.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:55.202][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-06 01:06:55.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-06 01:06:55.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:55.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:55.207][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-06-06 01:06:55.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-06 01:06:55.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:55.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:55.213][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:55.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:55.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:55.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:55.218][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:55.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:55.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:55.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:55.223][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:55.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:55.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:55.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:55.228][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:55.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:55.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:55.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:55.233][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:55.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:55.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:55.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:55.238][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-06 01:06:55.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-06 01:06:55.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:55.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:55.243][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-06 01:06:55.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-06 01:06:55.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:55.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:55.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:55.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:55.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:55.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:55.253][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-06 01:06:55.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-06 01:06:55.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:55.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:55.258][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:55.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:55.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:55.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:55.263][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:55.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:55.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:55.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:55.272][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:55.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:55.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:55.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:55.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:55.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:55.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:55.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:55.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:55.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:55.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:55.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:55.288][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:55.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:55.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:55.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-06 01:06:55.293][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2024-06-06 01:06:55.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:55.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:55.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:55.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:55.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:55.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:55.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:55.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:55.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:55.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:55.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:55.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-06-06 01:06:55.334][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-06-06 01:06:55.336][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-06-06 01:06:55.337][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-06-06 01:06:55.339][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-06-06 01:06:55.340][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-06 01:06:55.341][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-06 01:06:55.342][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:55.343][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:55.344][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:55.345][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-06-06 01:06:55.351][biodb::testContext]
biodb.INFO [2024-06-06 01:06:55.352][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-06 01:06:55.353][biodb::testContext] Test context - Test search of entries
biodb.INFO [2024-06-06 01:06:55.354][biodb::testContext] ********************************************************************************
biodb.INFO [2024-06-06 01:06:55.356][biodb::testContext]
biodb.INFO [2024-06-06 01:06:55.363][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.12.0.
biodb.DEBUG[2024-06-06 01:06:55.366][self$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.19-bioc/R/library/biodb/definitions.yml".
biodb.DEBUG[2024-06-06 01:06:55.371][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-06 01:06:55.372][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-06-06 01:06:55.374][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-06-06 01:06:55.375][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:55.376][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:55.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:55.378][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-06-06 01:06:55.379][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-06-06 01:06:55.381][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:55.382][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:55.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:55.384][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-06-06 01:06:55.385][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-06-06 01:06:55.386][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:55.387][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:55.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:55.390][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-06-06 01:06:55.391][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-06-06 01:06:55.392][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-06-06 01:06:55.393][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:55.394][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:55.396][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:55.397][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-06-06 01:06:55.398][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-06-06 01:06:55.399][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-06-06 01:06:55.400][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:55.401][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:55.402][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:55.404][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-06-06 01:06:55.405][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-06-06 01:06:55.406][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:55.408][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:55.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:55.411][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-06-06 01:06:55.413][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-06-06 01:06:55.415][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-06-06 01:06:55.417][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:55.419][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:55.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:55.422][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-06-06 01:06:55.424][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-06-06 01:06:55.426][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:55.428][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:55.430][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:55.431][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-06-06 01:06:55.432][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-06-06 01:06:55.433][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-06-06 01:06:55.440][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:55.441][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:55.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:55.444][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-06-06 01:06:55.445][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-06-06 01:06:55.446][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-06-06 01:06:55.447][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-06-06 01:06:55.449][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-06-06 01:06:55.450][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-06-06 01:06:55.451][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:55.452][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:55.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:55.455][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-06-06 01:06:55.456][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-06-06 01:06:55.457][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:55.458][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:55.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:55.460][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-06-06 01:06:55.462][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-06-06 01:06:55.463][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:55.464][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:55.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:55.466][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-06-06 01:06:55.468][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-06-06 01:06:55.469][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:55.470][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:55.471][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:55.472][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-06-06 01:06:55.474][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-06-06 01:06:55.475][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:55.476][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:55.477][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:55.478][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-06-06 01:06:55.479][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-06-06 01:06:55.481][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:55.482][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:55.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:55.484][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-06-06 01:06:55.485][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-06-06 01:06:55.489][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-06-06 01:06:55.490][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:55.491][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:55.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:55.494][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-06-06 01:06:55.495][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-06-06 01:06:55.496][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-06-06 01:06:55.497][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:55.498][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:55.499][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:55.501][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-06-06 01:06:55.503][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-06 01:06:55.504][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-06-06 01:06:55.505][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-06 01:06:55.507][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-06 01:06:55.508][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-06 01:06:55.509][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-06 01:06:55.510][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-06 01:06:55.511][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-06 01:06:55.513][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-06-06 01:06:55.514][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-06 01:06:55.515][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-06 01:06:55.517][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-06-06 01:06:55.518][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-06 01:06:55.519][self$setPropertyValue]
biodb.DEBUG[2024-06-06 01:06:55.520][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-06 01:06:55.522][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-06 01:06:55.522][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-06 01:06:55.522][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-06 01:06:55.522][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-06-06 01:06:55.522][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-06-06 01:06:55.523][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-06 01:06:55.524][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-06 01:06:55.525][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-06 01:06:55.527][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-06 01:06:55.528][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-06 01:06:55.529][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-06 01:06:55.530][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-06 01:06:55.532][self$setPropertyValue]
biodb.DEBUG[2024-06-06 01:06:55.533][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-06 01:06:55.534][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-06 01:06:55.535][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-06 01:06:55.536][self$setPropertyValue]
biodb.DEBUG[2024-06-06 01:06:55.538][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-06-06 01:06:55.540][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-06 01:06:55.541][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-06-06 01:06:55.542][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-06 01:06:55.543][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-06 01:06:55.545][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-06 01:06:55.546][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-06 01:06:55.547][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-06 01:06:55.548][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-06 01:06:55.549][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-06-06 01:06:55.551][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-06 01:06:55.552][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-06 01:06:55.553][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-06-06 01:06:55.554][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-06 01:06:55.556][self$setPropertyValue]
biodb.DEBUG[2024-06-06 01:06:55.557][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-06 01:06:55.558][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-06 01:06:55.558][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-06-06 01:06:55.558][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-06-06 01:06:55.558][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-06-06 01:06:55.558][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-06-06 01:06:55.559][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-06 01:06:55.561][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-06 01:06:55.562][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-06 01:06:55.563][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-06 01:06:55.564][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-06 01:06:55.570][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-06 01:06:55.572][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-06 01:06:55.573][self$setPropertyValue]
biodb.DEBUG[2024-06-06 01:06:55.575][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-06 01:06:55.576][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-06 01:06:55.577][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-06 01:06:55.578][self$setPropertyValue]
biodb.DEBUG[2024-06-06 01:06:55.580][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-06-06 01:06:55.582][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-06 01:06:55.583][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-06-06 01:06:55.584][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-06 01:06:55.585][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-06 01:06:55.587][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-06 01:06:55.588][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-06 01:06:55.589][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-06 01:06:55.590][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-06 01:06:55.592][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-06-06 01:06:55.593][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-06 01:06:55.594][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-06-06 01:06:55.595][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-06-06 01:06:55.597][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-06 01:06:55.598][self$setPropertyValue]
biodb.DEBUG[2024-06-06 01:06:55.599][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-06 01:06:55.600][self$setPropertyValue]
biodb.DEBUG[2024-06-06 01:06:55.601][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-06 01:06:55.603][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-06 01:06:55.604][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-06 01:06:55.605][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-06 01:06:55.606][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-06 01:06:55.607][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-06 01:06:55.608][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-06 01:06:55.610][self$setPropertyValue]
biodb.DEBUG[2024-06-06 01:06:55.611][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-06 01:06:55.613][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-06 01:06:55.614][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-06 01:06:55.616][self$setPropertyValue]
biodb.DEBUG[2024-06-06 01:06:55.618][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-06-06 01:06:55.620][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-06-06 01:06:55.621][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-06-06 01:06:55.622][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-06 01:06:55.623][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-06 01:06:55.624][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-06-06 01:06:55.626][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-06-06 01:06:55.627][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-06-06 01:06:55.628][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-06 01:06:55.629][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-06-06 01:06:55.631][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-06 01:06:55.632][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-06-06 01:06:55.633][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-06-06 01:06:55.634][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-06 01:06:55.635][self$setPropertyValue]
biodb.DEBUG[2024-06-06 01:06:55.637][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-06-06 01:06:55.638][self$setPropertyValue]
biodb.DEBUG[2024-06-06 01:06:55.639][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-06-06 01:06:55.640][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-06 01:06:55.641][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-06 01:06:55.643][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-06 01:06:55.644][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-06 01:06:55.645][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-06 01:06:55.646][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-06 01:06:55.647][self$setPropertyValue]
biodb.DEBUG[2024-06-06 01:06:55.649][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-06 01:06:55.650][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-06 01:06:55.651][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-06-06 01:06:55.652][self$setPropertyValue]
biodb.DEBUG[2024-06-06 01:06:55.654][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-06 01:06:55.655][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:55.656][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:55.657][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:55.658][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:55.659][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:55.661][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:55.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:55.663][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:55.664][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:55.665][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:55.666][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:55.667][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:55.668][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:55.669][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:55.670][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:55.672][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:55.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:55.674][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:55.675][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:55.676][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:55.677][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:55.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:55.679][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:55.680][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:55.681][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:55.683][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:55.684][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:55.685][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:55.686][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:55.687][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:55.688][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:55.689][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:55.690][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:55.691][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:55.693][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:55.699][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:55.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:55.701][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:55.702][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:55.704][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:55.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:55.706][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:55.707][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:55.708][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:55.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:55.710][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:55.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:55.713][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:55.714][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:55.715][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:55.716][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:55.717][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:55.718][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:55.719][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:55.720][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:55.721][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:55.723][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:55.724][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:55.725][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:55.726][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:55.727][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:55.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:55.729][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:55.730][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:55.731][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:55.732][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:55.734][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:55.735][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:55.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:55.737][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:55.738][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:55.739][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:55.740][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:55.741][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:55.742][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:55.744][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:55.745][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:55.746][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:55.747][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:55.748][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:55.749][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:55.750][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:55.751][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:55.752][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:55.754][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:55.755][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:55.756][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:55.757][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-06-06 01:06:55.759][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-06-06 01:06:55.760][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-06-06 01:06:55.762][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-06-06 01:06:55.764][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-06-06 01:06:55.765][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-06-06 01:06:55.767][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-06-06 01:06:55.768][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-06-06 01:06:55.770][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-06-06 01:06:55.772][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-06-06 01:06:55.773][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-06-06 01:06:55.775][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-06-06 01:06:55.776][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-06-06 01:06:55.778][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-06-06 01:06:55.779][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-06-06 01:06:55.781][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-06-06 01:06:55.783][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-06-06 01:06:55.784][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-06-06 01:06:55.786][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-06-06 01:06:55.787][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-06-06 01:06:55.789][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-06-06 01:06:55.790][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-06-06 01:06:55.792][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-06-06 01:06:55.794][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-06-06 01:06:55.795][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-06-06 01:06:55.797][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-06-06 01:06:55.798][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-06-06 01:06:55.800][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-06-06 01:06:55.802][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-06-06 01:06:55.803][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-06-06 01:06:55.805][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-06-06 01:06:55.806][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-06-06 01:06:55.808][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-06-06 01:06:55.809][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-06-06 01:06:55.811][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-06-06 01:06:55.813][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-06-06 01:06:55.819][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-06-06 01:06:55.821][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-06-06 01:06:55.823][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-06-06 01:06:55.825][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-06-06 01:06:55.826][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-06-06 01:06:55.828][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-06-06 01:06:55.829][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-06-06 01:06:55.831][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-06-06 01:06:55.832][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-06-06 01:06:55.834][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-06-06 01:06:55.836][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-06-06 01:06:55.837][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-06-06 01:06:55.839][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-06-06 01:06:55.840][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-06-06 01:06:55.842][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-06-06 01:06:55.844][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-06-06 01:06:55.845][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-06-06 01:06:55.847][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-06-06 01:06:55.848][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-06-06 01:06:55.850][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-06-06 01:06:55.851][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-06-06 01:06:55.853][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-06-06 01:06:55.855][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-06-06 01:06:55.856][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-06-06 01:06:55.858][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-06-06 01:06:55.859][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-06-06 01:06:55.861][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-06-06 01:06:55.863][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-06-06 01:06:55.864][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-06-06 01:06:55.866][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-06-06 01:06:55.867][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-06-06 01:06:55.869][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-06-06 01:06:55.870][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-06-06 01:06:55.872][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-06-06 01:06:55.874][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-06-06 01:06:55.875][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-06-06 01:06:55.877][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-06-06 01:06:55.879][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-06-06 01:06:55.882][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-06-06 01:06:55.884][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-06-06 01:06:55.886][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-06-06 01:06:55.888][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-06-06 01:06:55.890][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-06-06 01:06:55.891][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-06-06 01:06:55.893][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-06-06 01:06:55.894][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-06-06 01:06:55.896][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-06-06 01:06:55.898][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-06-06 01:06:55.900][initialize] This is biodb version 1.12.0.
biodb.DEBUG[2024-06-06 01:06:55.902][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-06-06 01:06:55.903][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:55.904][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:55.905][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:55.906][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:55.907][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:55.908][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-06 01:06:55.909][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-06 01:06:55.911][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:55.912][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:55.913][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:55.914][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:55.915][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:55.916][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-06 01:06:55.917][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-06 01:06:55.918][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:55.919][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:55.920][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:55.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:55.923][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:55.924][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-06 01:06:55.925][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-06 01:06:55.926][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:55.927][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:55.928][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:55.929][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:55.930][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:55.932][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-06 01:06:55.933][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-06 01:06:55.934][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:55.941][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:55.942][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:55.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:55.944][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:55.945][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-06 01:06:55.946][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-06 01:06:55.947][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:55.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:55.950][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:55.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:55.952][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:55.953][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-06 01:06:55.954][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-06 01:06:55.955][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:55.956][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:55.957][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:55.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:55.960][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:55.961][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-06 01:06:55.962][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-06 01:06:55.963][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:55.964][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:55.965][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:55.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:55.967][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:55.968][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-06 01:06:55.969][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-06 01:06:55.971][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:55.972][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:55.973][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:55.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:55.975][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:55.976][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-06 01:06:55.977][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-06 01:06:55.978][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:55.979][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:55.981][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:55.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:55.983][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:55.984][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-06 01:06:55.985][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-06 01:06:55.986][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:55.988][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:55.989][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:55.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:55.991][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:55.992][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-06 01:06:55.993][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-06 01:06:55.994][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:55.995][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:55.997][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:55.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:55.999][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:56.000][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-06 01:06:56.001][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-06 01:06:56.002][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:56.003][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:56.004][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:56.005][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:56.007][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:56.008][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-06 01:06:56.009][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-06 01:06:56.010][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:56.011][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:56.012][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:56.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:56.014][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:56.015][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-06 01:06:56.016][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-06 01:06:56.018][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:56.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:56.020][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:56.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:56.022][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:56.023][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-06 01:06:56.024][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-06 01:06:56.025][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:56.026][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:56.028][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:56.029][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:56.030][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:56.031][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-06 01:06:56.032][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-06 01:06:56.033][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:56.034][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:56.035][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:56.036][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:56.037][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-06-06 01:06:56.039][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-06 01:06:56.040][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-06 01:06:56.041][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:56.042][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:56.043][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:56.044][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:56.047][biodb$loadDefinitions] Load definitions from file "F:/biocbuild/bbs-3.19-bioc/R/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-06-06 01:06:56.050][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-06-06 01:06:56.052][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-06-06 01:06:56.053][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-06-06 01:06:56.054][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-06-06 01:06:56.055][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-06-06 01:06:56.057][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-06-06 01:06:56.058][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-06-06 01:06:56.059][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-06-06 01:06:56.060][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-06-06 01:06:56.067][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-06-06 01:06:56.068][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-06-06 01:06:56.070][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-06-06 01:06:56.071][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-06-06 01:06:56.072][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-06-06 01:06:56.073][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-06-06 01:06:56.073][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-06-06 01:06:56.073][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-06-06 01:06:56.073][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-06-06 01:06:56.073][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-06-06 01:06:56.073][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-06-06 01:06:56.073][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-06-06 01:06:56.073][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-06-06 01:06:56.073][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-06-06 01:06:56.073][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-06-06 01:06:56.073][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-06-06 01:06:56.073][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-06-06 01:06:56.073][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-06-06 01:06:56.073][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-06-06 01:06:56.073][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-06-06 01:06:56.073][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-06-06 01:06:56.073][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-06-06 01:06:56.073][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-06-06 01:06:56.075][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-06-06 01:06:56.076][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-06-06 01:06:56.076][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-06-06 01:06:56.076][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-06-06 01:06:56.077][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-06-06 01:06:56.078][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-06 01:06:56.080][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-06 01:06:56.081][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-06-06 01:06:56.082][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-06-06 01:06:56.083][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-06-06 01:06:56.084][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-06-06 01:06:56.086][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-06-06 01:06:56.086][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-06-06 01:06:56.087][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-06 01:06:56.088][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-06 01:06:56.089][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-06-06 01:06:56.090][self$setPropertyValue]
biodb.DEBUG[2024-06-06 01:06:56.092][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-06-06 01:06:56.094][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-06-06 01:06:56.095][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-06-06 01:06:56.097][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-06-06 01:06:56.099][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-06-06 01:06:56.102][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-06-06 01:06:56.103][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-06-06 01:06:56.105][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-06-06 01:06:56.107][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-06-06 01:06:56.108][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-06 01:06:56.109][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-06 01:06:56.111][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-06-06 01:06:56.112][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-06-06 01:06:56.114][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-06-06 01:06:56.114][self$setPropertyValue] Setting property "urls" to "F:/biocbuild/bbs-3.19-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-06-06 01:06:56.115][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-06-06 01:06:56.116][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-06-06 01:06:56.117][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-06-06 01:06:56.118][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-06-06 01:06:56.120][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-06-06 01:06:56.122][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-06-06 01:06:56.123][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-06 01:06:56.124][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-06 01:06:56.126][private$addConnectorRules] Create new rule for URL "F:/biocbuild/bbs-3.19-bioc/R/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-06-06 01:06:56.127][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-06-06 01:06:56.129][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-06-06 01:06:56.131][biodb::testThat]
biodb.INFO [2024-06-06 01:06:56.132][biodb::testThat] Running test function  test.searchMultipleWordsInDescription  (" We can search for multiple words inside description field. ").
biodb.INFO [2024-06-06 01:06:56.133][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-06-06 01:06:56.134][biodb::testThat]
biodb.DEBUG[2024-06-06 01:06:56.137][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-06-06 01:06:56.138][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2024-06-06 01:06:56.139][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2024-06-06 01:06:56.144][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-06 01:06:56.146][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-06 01:06:56.148][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-06-06 01:06:56.149][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-06 01:06:56.151][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-06-06 01:06:56.152][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-06-06 01:06:56.154][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-06-06 01:06:56.155][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-06-06 01:06:56.156][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-06-06 01:06:56.157][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-06-06 01:06:56.159][private$doSearchForEntries] Total number of IDs = 2
biodb.DEBUG[2024-06-06 01:06:56.161][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2024-06-06 01:06:56.162][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-06-06 01:06:56.164][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-06 01:06:56.166][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-06-06 01:06:56.168][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2024-06-06 01:06:56.170][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-06 01:06:56.174][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2024-06-06 01:06:56.176][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-06-06 01:06:56.178][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-06-06 01:06:56.180][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-06-06 01:06:56.183][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-06 01:06:56.185][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-06 01:06:56.187][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-06 01:06:56.217][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:56.218][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:56.219][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:56.220][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-06 01:06:56.230][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:56.232][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:56.233][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.235][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:56.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:56.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.241][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:56.243][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:56.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.245][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.246][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:56.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:56.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.252][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-06 01:06:56.253][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-06 01:06:56.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.255][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.257][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-06 01:06:56.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-06 01:06:56.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.262][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-06 01:06:56.264][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-06 01:06:56.265][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.266][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.268][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-06 01:06:56.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-06 01:06:56.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.273][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-06 01:06:56.275][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-06 01:06:56.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.277][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.279][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-06 01:06:56.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-06 01:06:56.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.284][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-06 01:06:56.285][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-06 01:06:56.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.287][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.289][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-06 01:06:56.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-06 01:06:56.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.294][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-06 01:06:56.295][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-06 01:06:56.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.298][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.299][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-06 01:06:56.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-06 01:06:56.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.304][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-06 01:06:56.306][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-06 01:06:56.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.308][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.309][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-06 01:06:56.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-06 01:06:56.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.314][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-06 01:06:56.316][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-06 01:06:56.317][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.318][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.320][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-06 01:06:56.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-06 01:06:56.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.325][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-06 01:06:56.326][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-06 01:06:56.327][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.328][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.330][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-06 01:06:56.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-06 01:06:56.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.335][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-06 01:06:56.336][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-06 01:06:56.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.339][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.340][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-06 01:06:56.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-06 01:06:56.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.345][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-06 01:06:56.346][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-06 01:06:56.348][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.349][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.350][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-06 01:06:56.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-06 01:06:56.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.365][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-06 01:06:56.367][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-06 01:06:56.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.370][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.372][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-06 01:06:56.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-06 01:06:56.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.377][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-06 01:06:56.378][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-06 01:06:56.379][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.381][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.382][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-06 01:06:56.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-06 01:06:56.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.387][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:56.388][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:56.390][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.391][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.392][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:56.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:56.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.397][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:56.399][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:56.400][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.401][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.402][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:56.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:56.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.407][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-06 01:06:56.409][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-06 01:06:56.410][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.411][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.413][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-06 01:06:56.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-06 01:06:56.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.418][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-06-06 01:06:56.419][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-06 01:06:56.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.421][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.423][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-06-06 01:06:56.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-06 01:06:56.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.428][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:56.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:56.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.433][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:56.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:56.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:56.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:56.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.443][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-06 01:06:56.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-06 01:06:56.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.448][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-06 01:06:56.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-06 01:06:56.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.453][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-06 01:06:56.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-06 01:06:56.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.458][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-06 01:06:56.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-06 01:06:56.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.463][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-06 01:06:56.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-06 01:06:56.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.468][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-06 01:06:56.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-06 01:06:56.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.473][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-06 01:06:56.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-06 01:06:56.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.478][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-06 01:06:56.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-06 01:06:56.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.482][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-06 01:06:56.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-06 01:06:56.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.487][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-06 01:06:56.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-06 01:06:56.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.497][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-06 01:06:56.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-06 01:06:56.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.503][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-06 01:06:56.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-06 01:06:56.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.508][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-06 01:06:56.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-06 01:06:56.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.513][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-06 01:06:56.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-06 01:06:56.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.518][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-06 01:06:56.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-06 01:06:56.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.523][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-06 01:06:56.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-06 01:06:56.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.528][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-06 01:06:56.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-06 01:06:56.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.533][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-06 01:06:56.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-06 01:06:56.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.538][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-06 01:06:56.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-06 01:06:56.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.542][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-06 01:06:56.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-06 01:06:56.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.547][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-06 01:06:56.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-06 01:06:56.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.552][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:56.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:56.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.557][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:56.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:56.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.562][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:56.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:56.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.567][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-06 01:06:56.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-06 01:06:56.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.572][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-06 01:06:56.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-06 01:06:56.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.577][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-06 01:06:56.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-06 01:06:56.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.582][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-06 01:06:56.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-06 01:06:56.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.587][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-06 01:06:56.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-06 01:06:56.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.591][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-06 01:06:56.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-06 01:06:56.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.596][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-06 01:06:56.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-06 01:06:56.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.601][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-06 01:06:56.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-06 01:06:56.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.606][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-06 01:06:56.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-06 01:06:56.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.611][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-06 01:06:56.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-06 01:06:56.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.617][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-06 01:06:56.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-06 01:06:56.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.624][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-06 01:06:56.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-06 01:06:56.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.637][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-06 01:06:56.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-06 01:06:56.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.643][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-06 01:06:56.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-06 01:06:56.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.647][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-06 01:06:56.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-06 01:06:56.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.653][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:56.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:56.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.658][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:56.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:56.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.663][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:56.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:56.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.668][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-06 01:06:56.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-06 01:06:56.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.673][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-06 01:06:56.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-06 01:06:56.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.678][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-06 01:06:56.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-06 01:06:56.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.683][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:56.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:56.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.688][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:56.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:56.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.693][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:56.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:56.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.698][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-06 01:06:56.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-06 01:06:56.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.702][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-06 01:06:56.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-06 01:06:56.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.707][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-06 01:06:56.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-06 01:06:56.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.712][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-06-06 01:06:56.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-06 01:06:56.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.717][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-06 01:06:56.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-06 01:06:56.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.722][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-06 01:06:56.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-06 01:06:56.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.727][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-06 01:06:56.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-06 01:06:56.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.732][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-06-06 01:06:56.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-06 01:06:56.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.738][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:56.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:56.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.743][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:56.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:56.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.748][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:56.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:56.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.753][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:56.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:56.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.758][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:56.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:56.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.769][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-06 01:06:56.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-06 01:06:56.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.775][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-06 01:06:56.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-06 01:06:56.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.780][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:56.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:56.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.785][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-06 01:06:56.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-06 01:06:56.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:56.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:56.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.795][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:56.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:56.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.800][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:56.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:56.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.805][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:56.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:56.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:56.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:56.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.815][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:56.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:56.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-06 01:06:56.820][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2024-06-06 01:06:56.821][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:56.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:56.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.826][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:56.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:56.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.831][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:56.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:56.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:56.836][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:56.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:56.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:56.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-06 01:06:56.841][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-06-06 01:06:56.842][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-06-06 01:06:56.844][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-06 01:06:56.845][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-06 01:06:56.846][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-06 01:06:57.288][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:57.289][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:57.290][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:57.291][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:57.293][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2024-06-06 01:06:57.294][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-06-06 01:06:57.297][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-06 01:06:57.299][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-06-06 01:06:57.301][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2024-06-06 01:06:57.303][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-06-06 01:06:57.305][loadFileContents] Loaded 1 files from cache: [1]: "C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2024-06-06 01:06:57.307][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-06-06 01:06:57.308][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-06-06 01:06:57.310][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-06-06 01:06:57.312][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-06 01:06:57.313][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-06 01:06:57.314][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-06 01:06:57.357][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:57.358][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:57.359][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:57.360][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-06 01:06:57.364][ef$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:57.366][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:57.367][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.368][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.370][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:57.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:57.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.381][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:57.383][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:57.384][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.386][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.388][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:57.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:57.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.393][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-06 01:06:57.394][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-06 01:06:57.395][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.397][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.399][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-06 01:06:57.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-06 01:06:57.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.405][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-06 01:06:57.406][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-06 01:06:57.407][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.408][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.410][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-06 01:06:57.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-06 01:06:57.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.415][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-06 01:06:57.417][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-06 01:06:57.418][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.419][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.421][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-06 01:06:57.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-06 01:06:57.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.426][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-06 01:06:57.427][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-06 01:06:57.429][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.430][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.431][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-06 01:06:57.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-06 01:06:57.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.436][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-06 01:06:57.438][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-06 01:06:57.439][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.440][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.442][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-06 01:06:57.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-06 01:06:57.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.447][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-06 01:06:57.448][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-06 01:06:57.450][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.451][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.452][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-06 01:06:57.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-06 01:06:57.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.458][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-06 01:06:57.459][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-06 01:06:57.460][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.461][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.463][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-06 01:06:57.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-06 01:06:57.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.468][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-06 01:06:57.470][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-06 01:06:57.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.472][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.473][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-06 01:06:57.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-06 01:06:57.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.479][ef$get] Asked field names are: formula.
biodb.TRACE[2024-06-06 01:06:57.480][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-06 01:06:57.481][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.482][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.484][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-06 01:06:57.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-06 01:06:57.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.489][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-06-06 01:06:57.490][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-06 01:06:57.492][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.493][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.494][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-06 01:06:57.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-06 01:06:57.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.500][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-06 01:06:57.501][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-06 01:06:57.502][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.503][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.505][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-06 01:06:57.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-06 01:06:57.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.510][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-06 01:06:57.516][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-06 01:06:57.518][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.519][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.521][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-06 01:06:57.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-06 01:06:57.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.527][ef$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:57.528][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:57.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.531][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.532][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:57.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:57.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.537][ef$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:57.539][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:57.541][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.542][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.544][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:57.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:57.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.549][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-06-06 01:06:57.550][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-06 01:06:57.552][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.553][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.554][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-06 01:06:57.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-06 01:06:57.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.560][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-06-06 01:06:57.561][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-06 01:06:57.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.563][ef$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.565][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-06-06 01:06:57.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-06 01:06:57.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:57.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:57.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:57.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:57.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:57.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:57.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.586][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-06 01:06:57.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-06 01:06:57.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.591][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-06 01:06:57.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-06 01:06:57.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.596][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-06-06 01:06:57.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-06-06 01:06:57.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.601][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-06 01:06:57.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-06 01:06:57.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.606][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-06 01:06:57.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-06 01:06:57.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.612][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-06-06 01:06:57.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-06-06 01:06:57.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.617][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-06 01:06:57.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-06 01:06:57.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.622][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-06 01:06:57.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-06 01:06:57.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.627][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-06-06 01:06:57.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-06-06 01:06:57.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.632][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-06 01:06:57.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-06 01:06:57.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.637][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-06 01:06:57.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-06 01:06:57.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.642][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-06-06 01:06:57.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-06-06 01:06:57.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.647][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-06 01:06:57.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-06 01:06:57.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.659][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-06 01:06:57.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-06 01:06:57.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.665][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-06-06 01:06:57.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-06-06 01:06:57.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.670][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-06 01:06:57.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-06 01:06:57.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.675][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-06 01:06:57.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-06 01:06:57.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.680][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-06-06 01:06:57.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-06-06 01:06:57.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.685][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-06 01:06:57.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-06 01:06:57.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.690][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-06 01:06:57.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-06 01:06:57.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.695][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-06-06 01:06:57.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-06-06 01:06:57.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.700][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:57.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:57.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.705][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:57.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:57.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.710][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:57.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:57.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.715][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-06 01:06:57.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-06 01:06:57.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.720][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-06 01:06:57.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-06 01:06:57.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.725][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-06-06 01:06:57.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-06-06 01:06:57.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.731][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-06 01:06:57.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-06 01:06:57.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.736][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-06 01:06:57.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-06 01:06:57.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.741][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-06-06 01:06:57.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-06-06 01:06:57.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.746][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-06 01:06:57.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-06 01:06:57.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.751][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-06 01:06:57.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-06 01:06:57.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.756][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-06 01:06:57.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-06 01:06:57.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.761][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-06 01:06:57.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-06 01:06:57.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.766][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-06 01:06:57.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-06 01:06:57.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.771][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-06-06 01:06:57.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-06-06 01:06:57.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.777][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-06 01:06:57.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-06 01:06:57.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.782][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-06 01:06:57.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-06 01:06:57.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.793][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-06-06 01:06:57.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-06-06 01:06:57.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.799][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:57.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:57.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.804][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:57.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:57.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.809][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:57.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:57.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.814][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-06 01:06:57.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-06 01:06:57.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.819][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-06 01:06:57.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-06 01:06:57.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.825][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-06 01:06:57.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-06-06 01:06:57.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.830][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:57.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:57.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.835][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:57.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:57.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.840][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:57.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-06-06 01:06:57.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.845][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-06 01:06:57.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-06 01:06:57.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.850][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-06 01:06:57.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-06 01:06:57.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.855][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-06-06 01:06:57.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-06-06 01:06:57.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.860][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-06-06 01:06:57.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-06 01:06:57.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.865][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-06 01:06:57.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-06 01:06:57.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.871][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-06 01:06:57.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-06 01:06:57.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.876][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-06-06 01:06:57.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-06 01:06:57.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.881][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-06-06 01:06:57.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-06-06 01:06:57.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.887][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:57.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:57.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.892][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:57.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:57.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.897][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:57.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:57.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.902][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:57.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:57.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.907][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-06-06 01:06:57.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-06-06 01:06:57.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.912][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-06 01:06:57.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-06 01:06:57.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.918][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-06 01:06:57.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-06 01:06:57.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:57.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:57.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.935][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-06-06 01:06:57.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-06-06 01:06:57.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:57.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:57.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:57.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:57.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.950][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:57.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:57.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.955][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:57.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:57.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:57.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:57.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-06-06 01:06:57.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-06-06 01:06:57.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-06 01:06:57.970][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2024-06-06 01:06:57.971][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:57.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:57.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.977][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:57.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:57.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.982][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:57.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:57.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:57.987][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:57.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:57.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:57.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-06 01:06:57.992][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-06-06 01:06:57.993][private$doSearchForEntries] COUNT IDS = 2
biodb.DEBUG[2024-06-06 01:06:57.994][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-06 01:06:57.996][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-06 01:06:57.997][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-06 01:06:58.074][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:58.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:58.076][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:58.078][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:58.083][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-06-06 01:06:58.084][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2024-06-06 01:06:58.085][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2024-06-06 01:06:58.088][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-06 01:06:58.090][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-06 01:06:58.091][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-06-06 01:06:58.093][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-06 01:06:58.095][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-06-06 01:06:58.096][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-06-06 01:06:58.098][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-06-06 01:06:58.099][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-06-06 01:06:58.100][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-06-06 01:06:58.102][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-06-06 01:06:58.103][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-06-06 01:06:58.105][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:58.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:58.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:58.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:58.110][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:58.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:58.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:58.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:58.115][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:58.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:58.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:58.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:58.120][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:58.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:58.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:58.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:58.125][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:58.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:58.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:58.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:58.136][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:58.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:58.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:58.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:58.142][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:58.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:58.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:58.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-06 01:06:58.147][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-06-06 01:06:58.148][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-06-06 01:06:58.149][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-06 01:06:58.150][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-06 01:06:58.151][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-06 01:06:58.184][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:58.186][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:58.187][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:58.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-06 01:06:58.189][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:58.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:58.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:58.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:58.195][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:58.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:58.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:58.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:58.200][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:58.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:58.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:58.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:58.205][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:58.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:58.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:58.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:58.210][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:58.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:58.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:58.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:58.215][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:58.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:58.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:58.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:58.220][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:58.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:58.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:58.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-06 01:06:58.225][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2024-06-06 01:06:58.226][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-06-06 01:06:58.227][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-06 01:06:58.229][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-06 01:06:58.235][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-06 01:06:58.250][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:58.252][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:58.253][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:58.254][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-06-06 01:06:58.259][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-06-06 01:06:58.261][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2024-06-06 01:06:58.262][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2024-06-06 01:06:58.264][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-06 01:06:58.266][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-06 01:06:58.268][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-06-06 01:06:58.270][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-06-06 01:06:58.271][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-06-06 01:06:58.272][private$doListFiles] List files in C:\Users\biocbuild\AppData\Local/R/cache/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-06-06 01:06:58.274][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-06-06 01:06:58.275][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-06-06 01:06:58.276][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-06-06 01:06:58.278][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-06-06 01:06:58.279][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-06-06 01:06:58.281][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:58.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:58.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:58.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:58.286][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:58.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:58.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:58.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:58.291][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:58.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:58.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:58.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:58.296][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:58.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:58.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:58.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:58.301][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:58.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:58.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:58.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:58.311][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:58.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:58.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:58.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:58.317][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:58.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:58.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:58.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-06 01:06:58.322][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2024-06-06 01:06:58.323][private$doSearchForEntries] COUNT IDS = 0
biodb.DEBUG[2024-06-06 01:06:58.325][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-06 01:06:58.326][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-06 01:06:58.327][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-06 01:06:58.366][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:58.368][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:58.369][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:58.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-06-06 01:06:58.372][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:58.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:58.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:58.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:58.377][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:58.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:58.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:58.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:58.382][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:58.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:58.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:58.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:58.387][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:58.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:58.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:58.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:58.392][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:58.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:58.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:58.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:58.397][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:58.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:58.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:58.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-06-06 01:06:58.402][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-06-06 01:06:58.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-06-06 01:06:58.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-06-06 01:06:58.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-06-06 01:06:58.407][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-06-06 01:06:58.408][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-06-06 01:06:58.409][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-06-06 01:06:58.410][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-06 01:06:58.412][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-06 01:06:58.451][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:58.453][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:58.454][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:58.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-06-06 01:06:58.465][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-06-06 01:06:58.466][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-06-06 01:06:58.467][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-06-06 01:06:58.469][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-06-06 01:06:58.470][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-06-06 01:06:58.471][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-06-06 01:06:58.472][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-06-06 01:06:58.473][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-06-06 01:06:58.474][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-06-06 01:06:58.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 243 ]
> 
> proc.time()
   user  system elapsed 
  10.29    0.89   25.01

CHECK results for biodbHmdb on palomino3

Summary

Command output

Installation output

Tests output

Example timings