Pierrick Roger
| Snapshot Date: 2024-05-29 14:00:10 -0400 (Wed, 29 May 2024) |
| git_url: https://git.bioconductor.org/packages/biodbHmdb |
| git_branch: RELEASE_3_19 |
| git_last_commit: a7f41b2 |
| git_last_commit_date: 2024-04-30 11:39:05 -0400 (Tue, 30 Apr 2024) |
| Back to Multiple platform build/check report for BioC 3.19: simplified long |
|
This page was generated on 2024-05-30 11:35:26 -0400 (Thu, 30 May 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4753 |
| lconway | macOS 12.7.1 Monterey | x86_64 | 4.4.0 (2024-04-24) -- "Puppy Cup" | 4518 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 202/2300 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| biodbHmdb 1.10.0 (landing page) Pierrick Roger
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | ERROR | |||||||||
| lconway | macOS 12.7.1 Monterey / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| kjohnson3 | macOS 13.6.5 Ventura / arm64 | see weekly results here | ||||||||||||
|
To the developers/maintainers of the biodbHmdb package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/biodbHmdb.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: biodbHmdb |
| Version: 1.10.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biodbHmdb_1.10.0.tar.gz |
| StartedAt: 2024-05-29 19:20:54 -0400 (Wed, 29 May 2024) |
| EndedAt: 2024-05-29 19:21:53 -0400 (Wed, 29 May 2024) |
| EllapsedTime: 59.1 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: biodbHmdb.Rcheck |
| Warnings: 1 |
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###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:biodbHmdb.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings biodbHmdb_1.10.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.19-bioc/meat/biodbHmdb.Rcheck’
* using R version 4.4.0 (2024-04-24)
* using platform: x86_64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.1
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘biodbHmdb/DESCRIPTION’ ... OK
* this is package ‘biodbHmdb’ version ‘1.10.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbHmdb’ can be installed ... OK
* used C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
* used SDK: ‘MacOSX11.3.sdk’
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespace in Imports field not imported from: ‘zip’
All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking for missing documentation entries ... WARNING
Undocumented code objects:
‘HmdbMetabolitesConn’ ‘HmdbMetabolitesEntry’ ‘hmdbToSqlite’
All user-level objects in a package should have documentation entries.
See chapter ‘Writing R documentation files’ in the ‘Writing R
Extensions’ manual.
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking compiled code ... NOTE
Note: information on .o files is not available
* checking files in ‘vignettes’ ... OK
* checking examples ... NONE
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 WARNING, 2 NOTEs
See
‘/Users/biocbuild/bbs-3.19-bioc/meat/biodbHmdb.Rcheck/00check.log’
for details.
biodbHmdb.Rcheck/00install.out
##############################################################################
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###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL biodbHmdb
###
##############################################################################
##############################################################################
* installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’
* installing *source* package ‘biodbHmdb’ ...
** using staged installation
** libs
using C++ compiler: ‘Apple clang version 14.0.0 (clang-1400.0.29.202)’
using SDK: ‘MacOSX11.3.sdk’
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c EntryMaker.cpp -o EntryMaker.o
EntryMaker.cpp:6:5: warning: field 'accession_tag' will be initialized after field 'closed' [-Wreorder-ctor]
accession_tag("<accession>", "</accession>"),
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
closed(true)
1 warning generated.
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c FileEntryMaker.cpp -o FileEntryMaker.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c RcppExports.cpp -o RcppExports.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c StringEnrtryMaker.cpp -o StringEnrtryMaker.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c TagDetector.cpp -o TagDetector.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c XmlSplitter.cpp -o XmlSplitter.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c extractXmlEntries.cpp -o extractXmlEntries.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c test-100-TagDetector.cpp -o test-100-TagDetector.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c test-150-StringEntryMaker.cpp -o test-150-StringEntryMaker.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c test-200-XmlSplitter.cpp -o test-200-XmlSplitter.o
clang++ -arch x86_64 -std=gnu++17 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/Rcpp/include' -I'/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/testthat/include' -I/opt/R/x86_64/include -fPIC -falign-functions=64 -Wall -g -O2 -c test-runner.cpp -o test-runner.o
clang++ -arch x86_64 -std=gnu++17 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -L/Library/Frameworks/R.framework/Resources/lib -L/opt/R/x86_64/lib -o biodbHmdb.so EntryMaker.o FileEntryMaker.o RcppExports.o StringEnrtryMaker.o TagDetector.o XmlSplitter.o extractXmlEntries.o test-100-TagDetector.o test-150-StringEntryMaker.o test-200-XmlSplitter.o test-runner.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/00LOCK-biodbHmdb/00new/biodbHmdb/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
No man pages found in package ‘biodbHmdb’
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbHmdb)
biodbHmdb.Rcheck/tests/testthat.Rout
R version 4.4.0 (2024-04-24) -- "Puppy Cup"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # vi: fdm=marker
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbHmdb)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbHmdb")
biodb.INFO [2024-05-29 19:21:36.674][biodb::testContext]
biodb.INFO [2024-05-29 19:21:36.679][biodb::testContext] ********************************************************************************
biodb.INFO [2024-05-29 19:21:36.680][biodb::testContext] Test context - Tests of independent functions
biodb.INFO [2024-05-29 19:21:36.682][biodb::testContext] ********************************************************************************
biodb.INFO [2024-05-29 19:21:36.683][biodb::testContext]
biodb.INFO [2024-05-29 19:21:36.685][biodb::testThat]
biodb.INFO [2024-05-29 19:21:36.686][biodb::testThat] Running test function test_extractXmlEntries (" extractXmlEntries() works fine. ").
biodb.INFO [2024-05-29 19:21:36.688][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-29 19:21:36.690][biodb::testThat]
biodb.INFO [2024-05-29 19:21:36.914][biodb::testContext]
biodb.INFO [2024-05-29 19:21:36.916][biodb::testContext] ********************************************************************************
biodb.INFO [2024-05-29 19:21:36.917][biodb::testContext] Test context - Generic tests
biodb.INFO [2024-05-29 19:21:36.919][biodb::testContext] ********************************************************************************
biodb.INFO [2024-05-29 19:21:36.920][biodb::testContext]
biodb.INFO [2024-05-29 19:21:36.935][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.12.0.
biodb.DEBUG[2024-05-29 19:21:36.938][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-05-29 19:21:36.948][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-29 19:21:36.949][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-05-29 19:21:36.951][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-05-29 19:21:36.952][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:36.954][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:36.955][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:36.956][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-05-29 19:21:36.986][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-05-29 19:21:36.988][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:36.990][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:36.991][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:36.993][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-05-29 19:21:36.994][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-05-29 19:21:36.996][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:36.997][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:36.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:37.000][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-05-29 19:21:37.001][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-05-29 19:21:37.002][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-05-29 19:21:37.003][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:37.005][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:37.006][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:37.007][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-05-29 19:21:37.008][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-05-29 19:21:37.010][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-05-29 19:21:37.011][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:37.012][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:37.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:37.014][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-05-29 19:21:37.016][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-05-29 19:21:37.017][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:37.018][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:37.020][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:37.021][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-05-29 19:21:37.022][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-05-29 19:21:37.024][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-05-29 19:21:37.025][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:37.026][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:37.027][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:37.029][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-05-29 19:21:37.030][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-05-29 19:21:37.031][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:37.033][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:37.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:37.036][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-05-29 19:21:37.037][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-05-29 19:21:37.038][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-05-29 19:21:37.040][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:37.041][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:37.042][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:37.044][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-05-29 19:21:37.045][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-05-29 19:21:37.047][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-05-29 19:21:37.047][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-05-29 19:21:37.049][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-05-29 19:21:37.050][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-05-29 19:21:37.051][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:37.052][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:37.054][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:37.055][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-05-29 19:21:37.056][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-05-29 19:21:37.058][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:37.059][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:37.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:37.061][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-05-29 19:21:37.063][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-05-29 19:21:37.064][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:37.065][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:37.066][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:37.067][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-05-29 19:21:37.069][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-05-29 19:21:37.070][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:37.071][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:37.072][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:37.073][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-05-29 19:21:37.075][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-05-29 19:21:37.076][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:37.077][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:37.078][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:37.080][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-05-29 19:21:37.081][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-05-29 19:21:37.083][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:37.084][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:37.085][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:37.086][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-05-29 19:21:37.088][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-05-29 19:21:37.116][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-05-29 19:21:37.118][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:37.119][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:37.121][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:37.122][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-05-29 19:21:37.124][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-05-29 19:21:37.125][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-05-29 19:21:37.127][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:37.127][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:37.128][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:37.133][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-05-29 19:21:37.177][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-29 19:21:37.201][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-05-29 19:21:37.203][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-29 19:21:37.205][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-29 19:21:37.206][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-29 19:21:37.207][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-29 19:21:37.208][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-29 19:21:37.210][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-29 19:21:37.211][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-05-29 19:21:37.212][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-29 19:21:37.214][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-29 19:21:37.215][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-05-29 19:21:37.216][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-29 19:21:37.217][self$setPropertyValue]
biodb.DEBUG[2024-05-29 19:21:37.219][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-29 19:21:37.220][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-29 19:21:37.220][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-05-29 19:21:37.220][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-05-29 19:21:37.220][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-05-29 19:21:37.220][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-05-29 19:21:37.222][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-29 19:21:37.223][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-29 19:21:37.224][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-29 19:21:37.226][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-29 19:21:37.227][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-29 19:21:37.228][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-29 19:21:37.238][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-29 19:21:37.239][self$setPropertyValue]
biodb.DEBUG[2024-05-29 19:21:37.241][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-29 19:21:37.243][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-29 19:21:37.244][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-29 19:21:37.246][self$setPropertyValue]
biodb.DEBUG[2024-05-29 19:21:37.248][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-05-29 19:21:37.250][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-29 19:21:37.252][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-05-29 19:21:37.253][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-29 19:21:37.255][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-29 19:21:37.256][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-29 19:21:37.258][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-29 19:21:37.259][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-29 19:21:37.260][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-29 19:21:37.261][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-05-29 19:21:37.262][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-29 19:21:37.263][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-29 19:21:37.264][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-05-29 19:21:37.266][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-29 19:21:37.267][self$setPropertyValue]
biodb.DEBUG[2024-05-29 19:21:37.268][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-29 19:21:37.270][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-29 19:21:37.270][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-05-29 19:21:37.270][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-05-29 19:21:37.270][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-05-29 19:21:37.270][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-05-29 19:21:37.271][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-29 19:21:37.272][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-29 19:21:37.273][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-29 19:21:37.275][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-29 19:21:37.277][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-29 19:21:37.278][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-29 19:21:37.279][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-29 19:21:37.280][self$setPropertyValue]
biodb.DEBUG[2024-05-29 19:21:37.281][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-29 19:21:37.282][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-29 19:21:37.283][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-29 19:21:37.284][self$setPropertyValue]
biodb.DEBUG[2024-05-29 19:21:37.285][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-05-29 19:21:37.288][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-29 19:21:37.289][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-05-29 19:21:37.291][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-29 19:21:37.316][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-29 19:21:37.318][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-29 19:21:37.319][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-29 19:21:37.321][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-29 19:21:37.322][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-29 19:21:37.323][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-05-29 19:21:37.325][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-29 19:21:37.327][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-05-29 19:21:37.328][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-05-29 19:21:37.329][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-29 19:21:37.330][self$setPropertyValue]
biodb.DEBUG[2024-05-29 19:21:37.331][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-29 19:21:37.333][self$setPropertyValue]
biodb.DEBUG[2024-05-29 19:21:37.334][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-29 19:21:37.335][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-29 19:21:37.336][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-29 19:21:37.337][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-29 19:21:37.339][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-29 19:21:37.340][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-29 19:21:37.341][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-29 19:21:37.343][self$setPropertyValue]
biodb.DEBUG[2024-05-29 19:21:37.344][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-29 19:21:37.345][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-29 19:21:37.346][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-29 19:21:37.347][self$setPropertyValue]
biodb.DEBUG[2024-05-29 19:21:37.349][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-05-29 19:21:37.351][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-29 19:21:37.351][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-05-29 19:21:37.353][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-29 19:21:37.354][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-29 19:21:37.355][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-29 19:21:37.356][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-29 19:21:37.358][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-29 19:21:37.359][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-29 19:21:37.360][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-05-29 19:21:37.362][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-29 19:21:37.363][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-05-29 19:21:37.364][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-05-29 19:21:37.366][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-29 19:21:37.367][self$setPropertyValue]
biodb.DEBUG[2024-05-29 19:21:37.368][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-29 19:21:37.370][self$setPropertyValue]
biodb.DEBUG[2024-05-29 19:21:37.371][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-29 19:21:37.373][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-29 19:21:37.374][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-29 19:21:37.375][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-29 19:21:37.377][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-29 19:21:37.378][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-29 19:21:37.379][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-29 19:21:37.380][self$setPropertyValue]
biodb.DEBUG[2024-05-29 19:21:37.382][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-29 19:21:37.383][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-29 19:21:37.384][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-29 19:21:37.386][self$setPropertyValue]
biodb.DEBUG[2024-05-29 19:21:37.391][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-29 19:21:37.392][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:37.394][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:37.395][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:37.396][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:37.398][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:37.399][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:37.400][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:37.401][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:37.402][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:37.403][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:37.404][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:37.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:37.406][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:37.407][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:37.408][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:37.409][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:37.411][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:37.412][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:37.413][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:37.414][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:37.415][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:37.416][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:37.417][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:37.419][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:37.420][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:37.421][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:37.423][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:37.424][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:37.425][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:37.426][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:37.428][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:37.428][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:37.429][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:37.430][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:37.431][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:37.432][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:37.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:37.435][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:37.436][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:37.437][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:37.438][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:37.440][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:37.441][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:37.442][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:37.443][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:37.444][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:37.445][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:37.446][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:37.447][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:37.448][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:37.450][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:37.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:37.452][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:37.453][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:37.454][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:37.456][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:37.457][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:37.458][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:37.459][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:37.460][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:37.461][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:37.462][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:37.464][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:37.465][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:37.466][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:37.467][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:37.469][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:37.470][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:37.471][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:37.472][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:37.473][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:37.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:37.476][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:37.477][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:37.478][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:37.479][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:37.480][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:37.482][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:37.483][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:37.484][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:37.485][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:37.486][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:37.487][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:37.489][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:37.491][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:37.492][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:37.493][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:37.495][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-05-29 19:21:37.509][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-05-29 19:21:37.511][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-05-29 19:21:37.513][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-05-29 19:21:37.515][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-05-29 19:21:37.517][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-05-29 19:21:37.519][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-05-29 19:21:37.521][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-05-29 19:21:37.523][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-05-29 19:21:37.525][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-05-29 19:21:37.526][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-05-29 19:21:37.528][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-05-29 19:21:37.530][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-05-29 19:21:37.532][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-05-29 19:21:37.534][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-05-29 19:21:37.536][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-05-29 19:21:37.538][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-05-29 19:21:37.540][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-05-29 19:21:37.542][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-05-29 19:21:37.544][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-05-29 19:21:37.545][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-05-29 19:21:37.547][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-05-29 19:21:37.549][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-05-29 19:21:37.551][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-05-29 19:21:37.553][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-05-29 19:21:37.556][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-05-29 19:21:37.557][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-05-29 19:21:37.559][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-05-29 19:21:37.560][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-05-29 19:21:37.562][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-05-29 19:21:37.564][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-05-29 19:21:37.566][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-05-29 19:21:37.568][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-05-29 19:21:37.570][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-05-29 19:21:37.572][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-05-29 19:21:37.574][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-05-29 19:21:37.575][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-05-29 19:21:37.577][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-05-29 19:21:37.579][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-05-29 19:21:37.581][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-05-29 19:21:37.583][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-05-29 19:21:37.585][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-05-29 19:21:37.586][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-05-29 19:21:37.588][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-05-29 19:21:37.590][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-05-29 19:21:37.593][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-05-29 19:21:37.595][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-05-29 19:21:37.597][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-05-29 19:21:37.599][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-05-29 19:21:37.601][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-05-29 19:21:37.604][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-05-29 19:21:37.605][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-05-29 19:21:37.607][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-05-29 19:21:37.609][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-05-29 19:21:37.611][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-05-29 19:21:37.613][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-05-29 19:21:37.615][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-05-29 19:21:37.617][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-05-29 19:21:37.619][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-05-29 19:21:37.621][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-05-29 19:21:37.623][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-05-29 19:21:37.625][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-05-29 19:21:37.627][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-05-29 19:21:37.629][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-05-29 19:21:37.630][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-05-29 19:21:37.632][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-05-29 19:21:37.633][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-05-29 19:21:37.636][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-05-29 19:21:37.638][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-05-29 19:21:37.640][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-05-29 19:21:37.642][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-05-29 19:21:37.644][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-05-29 19:21:37.646][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-05-29 19:21:37.648][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-05-29 19:21:37.650][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-05-29 19:21:37.652][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-05-29 19:21:37.654][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-05-29 19:21:37.656][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-05-29 19:21:37.657][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-05-29 19:21:37.660][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-05-29 19:21:37.662][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-05-29 19:21:37.664][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-05-29 19:21:37.666][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-05-29 19:21:37.672][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-05-29 19:21:37.675][initialize] This is biodb version 1.12.0.
biodb.DEBUG[2024-05-29 19:21:37.681][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-29 19:21:37.682][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:37.684][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:37.685][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:37.686][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:37.694][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:37.695][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-29 19:21:37.697][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-29 19:21:37.698][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:37.699][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:37.701][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:37.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:37.703][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:37.704][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-29 19:21:37.705][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-29 19:21:37.707][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:37.708][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:37.709][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:37.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:37.712][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:37.713][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-29 19:21:37.714][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-29 19:21:37.714][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:37.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:37.717][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:37.717][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:37.718][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:37.720][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-29 19:21:37.721][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-29 19:21:37.722][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:37.723][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:37.725][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:37.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:37.727][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:37.728][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-29 19:21:37.729][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-29 19:21:37.730][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:37.732][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:37.733][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:37.734][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:37.735][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:37.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-29 19:21:37.738][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-29 19:21:37.739][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:37.739][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:37.741][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:37.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:37.781][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:37.782][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-29 19:21:37.783][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-29 19:21:37.784][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:37.786][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:37.787][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:37.788][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:37.789][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:37.790][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-29 19:21:37.791][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-29 19:21:37.793][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:37.794][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:37.795][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:37.797][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:37.798][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:37.799][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-29 19:21:37.800][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-29 19:21:37.801][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:37.801][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:37.803][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:37.803][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:37.804][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:37.805][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-29 19:21:37.806][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-29 19:21:37.807][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:37.808][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:37.810][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:37.811][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:37.812][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:37.813][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-29 19:21:37.815][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-29 19:21:37.816][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:37.817][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:37.818][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:37.819][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:37.821][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:37.822][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-29 19:21:37.823][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-29 19:21:37.824][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:37.825][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:37.827][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:37.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:37.829][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:37.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-29 19:21:37.831][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-29 19:21:37.833][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:37.834][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:37.835][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:37.836][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:37.838][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:37.839][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-29 19:21:37.840][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-29 19:21:37.841][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:37.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:37.843][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:37.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:37.846][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:37.847][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-29 19:21:37.848][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-29 19:21:37.849][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:37.850][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:37.852][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:37.853][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:37.854][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:37.855][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-29 19:21:37.857][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-29 19:21:37.858][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:37.859][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:37.860][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:37.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:37.862][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:37.863][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-29 19:21:37.864][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-29 19:21:37.866][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:37.867][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:37.868][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:37.870][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:37.872][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-05-29 19:21:37.884][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-05-29 19:21:37.887][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-29 19:21:37.889][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-05-29 19:21:37.890][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-29 19:21:37.891][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-29 19:21:37.892][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-05-29 19:21:37.894][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-05-29 19:21:37.895][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-05-29 19:21:37.896][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-29 19:21:37.898][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-05-29 19:21:37.899][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-29 19:21:37.901][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-29 19:21:37.903][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-05-29 19:21:37.904][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-29 19:21:37.905][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-05-29 19:21:37.905][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-05-29 19:21:37.905][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-05-29 19:21:37.905][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-05-29 19:21:37.905][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-05-29 19:21:37.905][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-05-29 19:21:37.905][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-05-29 19:21:37.905][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-05-29 19:21:37.905][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-05-29 19:21:37.905][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-05-29 19:21:37.905][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-05-29 19:21:37.905][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-05-29 19:21:37.905][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-05-29 19:21:37.905][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-05-29 19:21:37.905][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-05-29 19:21:37.905][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-05-29 19:21:37.905][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-05-29 19:21:37.905][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-05-29 19:21:37.907][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-05-29 19:21:37.908][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-29 19:21:37.908][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-05-29 19:21:37.908][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-05-29 19:21:37.910][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-05-29 19:21:37.911][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-29 19:21:37.912][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-29 19:21:37.913][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-29 19:21:37.914][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-29 19:21:37.915][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-29 19:21:37.917][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-29 19:21:37.918][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-05-29 19:21:37.918][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-05-29 19:21:37.920][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-29 19:21:37.920][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-29 19:21:37.922][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-05-29 19:21:37.923][self$setPropertyValue]
biodb.DEBUG[2024-05-29 19:21:37.930][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-05-29 19:21:37.933][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-05-29 19:21:37.934][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-05-29 19:21:37.936][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-05-29 19:21:37.938][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-05-29 19:21:37.975][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-05-29 19:21:37.976][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-05-29 19:21:37.982][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-05-29 19:21:37.988][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-05-29 19:21:37.994][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-29 19:21:37.996][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-29 19:21:37.998][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-05-29 19:21:37.999][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-05-29 19:21:38.001][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-05-29 19:21:38.001][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-05-29 19:21:38.002][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-29 19:21:38.003][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-29 19:21:38.005][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-05-29 19:21:38.006][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-05-29 19:21:38.008][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-05-29 19:21:38.043][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-05-29 19:21:38.045][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-29 19:21:38.046][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-29 19:21:38.048][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-05-29 19:21:38.050][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-29 19:21:38.051][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-05-29 19:21:38.061][biodb::testThat]
biodb.INFO [2024-05-29 19:21:38.063][biodb::testThat] Running test function test.entry.fields (" Entry fields have a correct value ").
biodb.INFO [2024-05-29 19:21:38.064][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-29 19:21:38.066][biodb::testThat]
biodb.TRACE[2024-05-29 19:21:38.076][loadFileContents] Loaded 1 files from cache: [1]: "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodbHmdb/testref/entry-hmdb.metabolites-HMDB0000001-content.xml".
biodb.DEBUG[2024-05-29 19:21:38.079][biodb$getFactory()$createEntryFromCo ...] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-05-29 19:21:38.084][biodb$getFactory()$createEntryFromCo ...] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-05-29 19:21:38.094][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-29 19:21:38.095][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-29 19:21:38.097][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-29 19:21:38.106][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:38.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:38.108][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:38.110][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-29 19:21:38.124][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:38.125][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:38.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.128][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:38.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:38.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.154][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:38.156][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:38.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.159][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.197][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:38.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:38.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.203][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-29 19:21:38.204][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-29 19:21:38.205][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.206][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.208][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-29 19:21:38.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-29 19:21:38.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.213][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-29 19:21:38.215][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-29 19:21:38.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.217][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.219][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-29 19:21:38.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-29 19:21:38.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.224][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-29 19:21:38.225][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-29 19:21:38.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.228][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.230][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-29 19:21:38.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-29 19:21:38.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.235][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-29 19:21:38.236][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-29 19:21:38.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.239][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.241][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-29 19:21:38.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-29 19:21:38.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.245][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-29 19:21:38.247][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-29 19:21:38.248][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.249][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.251][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-29 19:21:38.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-29 19:21:38.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.257][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-29 19:21:38.258][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-29 19:21:38.259][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.270][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.272][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-29 19:21:38.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-29 19:21:38.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.278][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-29 19:21:38.279][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-29 19:21:38.280][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.281][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.283][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-29 19:21:38.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-29 19:21:38.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.289][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-29 19:21:38.290][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-29 19:21:38.291][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.293][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.295][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-29 19:21:38.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-29 19:21:38.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.300][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-29 19:21:38.301][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-29 19:21:38.303][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.304][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.305][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-29 19:21:38.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-29 19:21:38.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.311][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-29 19:21:38.312][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-29 19:21:38.313][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.314][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.315][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-29 19:21:38.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-29 19:21:38.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.321][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-29 19:21:38.322][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-29 19:21:38.323][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.324][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.326][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-29 19:21:38.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-29 19:21:38.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.331][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-29 19:21:38.332][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-29 19:21:38.334][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.335][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.337][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-29 19:21:38.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-29 19:21:38.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.342][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:38.344][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:38.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.346][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.347][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:38.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:38.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.352][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:38.354][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:38.355][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.356][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.358][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:38.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:38.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.364][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-05-29 19:21:38.365][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-29 19:21:38.366][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.367][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.368][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-29 19:21:38.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-29 19:21:38.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.374][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-05-29 19:21:38.375][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-29 19:21:38.376][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.378][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.380][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-05-29 19:21:38.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-29 19:21:38.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.385][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:38.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:38.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.392][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:38.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:38.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.398][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:38.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:38.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.448][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-29 19:21:38.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-29 19:21:38.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.462][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-29 19:21:38.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-29 19:21:38.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.467][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-29 19:21:38.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-29 19:21:38.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.472][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-29 19:21:38.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-29 19:21:38.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.477][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-29 19:21:38.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-29 19:21:38.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.482][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-29 19:21:38.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-29 19:21:38.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.487][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-29 19:21:38.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-29 19:21:38.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.492][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-29 19:21:38.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-29 19:21:38.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.497][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-29 19:21:38.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-29 19:21:38.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.502][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-29 19:21:38.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-29 19:21:38.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.507][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-29 19:21:38.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-29 19:21:38.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.511][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-29 19:21:38.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-29 19:21:38.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.516][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-29 19:21:38.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-29 19:21:38.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.521][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-29 19:21:38.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-29 19:21:38.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.526][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-29 19:21:38.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-29 19:21:38.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.530][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-29 19:21:38.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-29 19:21:38.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.535][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-29 19:21:38.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-29 19:21:38.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.540][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-29 19:21:38.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-29 19:21:38.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.546][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-29 19:21:38.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-29 19:21:38.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.551][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-29 19:21:38.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-29 19:21:38.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.556][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-29 19:21:38.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-29 19:21:38.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.562][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:38.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:38.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.568][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:38.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:38.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.574][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:38.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:38.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.579][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-29 19:21:38.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-29 19:21:38.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.584][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-29 19:21:38.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-29 19:21:38.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.589][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-29 19:21:38.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-29 19:21:38.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.593][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-29 19:21:38.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-29 19:21:38.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.598][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-29 19:21:38.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-29 19:21:38.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.603][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-29 19:21:38.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-29 19:21:38.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.608][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-29 19:21:38.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-29 19:21:38.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.613][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-29 19:21:38.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-29 19:21:38.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.619][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-29 19:21:38.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-29 19:21:38.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.623][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-29 19:21:38.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-29 19:21:38.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.628][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-29 19:21:38.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-29 19:21:38.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.632][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-29 19:21:38.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-29 19:21:38.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.637][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-29 19:21:38.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-29 19:21:38.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.648][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-29 19:21:38.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-29 19:21:38.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.655][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-29 19:21:38.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-29 19:21:38.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.660][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:38.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:38.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.664][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:38.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:38.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.669][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:38.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:38.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.674][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-29 19:21:38.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-29 19:21:38.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.679][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-29 19:21:38.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-29 19:21:38.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.684][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-29 19:21:38.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-29 19:21:38.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.690][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:38.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:38.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.694][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:38.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:38.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.701][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:38.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:38.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.707][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-29 19:21:38.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-29 19:21:38.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.715][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-29 19:21:38.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-29 19:21:38.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.719][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-29 19:21:38.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-29 19:21:38.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.725][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-05-29 19:21:38.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-29 19:21:38.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.730][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-29 19:21:38.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-29 19:21:38.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.735][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-29 19:21:38.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-29 19:21:38.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.740][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-29 19:21:38.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-29 19:21:38.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.746][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-05-29 19:21:38.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-29 19:21:38.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.776][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:38.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:38.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.780][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:38.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:38.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.785][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:38.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:38.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.790][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:38.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:38.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.795][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:38.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:38.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.801][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-29 19:21:38.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-29 19:21:38.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.807][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-29 19:21:38.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-29 19:21:38.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:38.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:38.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.818][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-29 19:21:38.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-29 19:21:38.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.824][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:38.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:38.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.829][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:38.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:38.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:38.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:38.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.847][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:38.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:38.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:38.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:38.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:38.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:38.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-29 19:21:38.862][biodb$getFactory()$createEntryFromCo ...] Accession numbers: HMDB0000001.
biodb.TRACE[2024-05-29 19:21:38.865][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-29 19:21:38.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-29 19:21:38.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.869][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-29 19:21:38.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-29 19:21:38.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.875][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-29 19:21:38.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-29 19:21:38.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.881][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-29 19:21:38.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-29 19:21:38.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.908][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:38.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:38.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.923][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-29 19:21:38.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-29 19:21:38.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.936][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:38.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:38.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:38.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:38.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.949][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:38.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:38.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.957][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:38.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:38.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:38.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:38.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.968][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:38.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:38.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.973][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-29 19:21:38.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-29 19:21:38.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.977][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-29 19:21:38.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-29 19:21:38.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:38.983][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-29 19:21:38.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-29 19:21:38.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:38.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:39.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:39.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:39.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:39.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:39.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:39.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.044][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:39.046][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:39.047][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.048][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:39.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:39.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.067][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:39.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:39.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.072][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:39.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:39.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.078][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:39.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:39.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.083][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:39.084][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:39.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.092][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.093][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:39.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:39.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.110][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-29 19:21:39.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-29 19:21:39.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.119][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-29 19:21:39.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-29 19:21:39.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.124][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-29 19:21:39.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-29 19:21:39.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.129][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-29 19:21:39.130][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-29 19:21:39.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.132][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.133][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-29 19:21:39.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-29 19:21:39.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.149][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-29 19:21:39.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-29 19:21:39.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.154][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-29 19:21:39.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-29 19:21:39.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.160][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-29 19:21:39.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-29 19:21:39.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.165][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-29 19:21:39.166][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-29 19:21:39.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.168][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.170][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-29 19:21:39.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-29 19:21:39.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.188][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-29 19:21:39.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-29 19:21:39.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.195][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-29 19:21:39.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-29 19:21:39.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.200][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-29 19:21:39.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-29 19:21:39.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.206][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-29 19:21:39.208][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-29 19:21:39.209][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.210][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.212][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-29 19:21:39.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-29 19:21:39.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.229][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-29 19:21:39.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-29 19:21:39.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.235][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-29 19:21:39.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-29 19:21:39.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.241][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-29 19:21:39.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-29 19:21:39.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.246][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-29 19:21:39.248][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-29 19:21:39.249][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.250][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.252][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-29 19:21:39.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-29 19:21:39.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.268][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:39.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:39.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.274][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:39.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:39.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.277][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:39.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:39.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.283][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:39.285][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:39.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.287][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.288][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:39.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:39.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.312][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:39.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:39.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.319][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:39.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:39.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.325][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:39.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:39.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.331][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:39.332][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:39.333][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.335][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.336][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:39.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:39.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.355][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-29 19:21:39.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-29 19:21:39.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.360][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-29 19:21:39.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-29 19:21:39.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.365][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-29 19:21:39.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-29 19:21:39.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.371][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-29 19:21:39.372][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-29 19:21:39.373][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.375][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.376][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-29 19:21:39.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-29 19:21:39.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.396][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-29 19:21:39.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-29 19:21:39.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.401][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-29 19:21:39.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-29 19:21:39.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.407][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-29 19:21:39.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-29 19:21:39.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.412][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-29 19:21:39.413][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-29 19:21:39.414][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.414][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.415][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-29 19:21:39.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-29 19:21:39.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.432][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-29 19:21:39.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-29 19:21:39.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.438][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-29 19:21:39.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-29 19:21:39.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.442][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-29 19:21:39.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-29 19:21:39.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.447][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-29 19:21:39.448][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-29 19:21:39.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.450][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.451][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-29 19:21:39.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-29 19:21:39.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.470][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-29 19:21:39.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-29 19:21:39.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.476][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-29 19:21:39.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-29 19:21:39.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.482][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-29 19:21:39.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-29 19:21:39.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.486][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-29 19:21:39.487][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-29 19:21:39.489][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.490][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.491][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-29 19:21:39.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-29 19:21:39.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.514][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-29 19:21:39.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-29 19:21:39.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.521][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-29 19:21:39.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-29 19:21:39.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.526][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-29 19:21:39.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-29 19:21:39.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.532][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-29 19:21:39.534][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-29 19:21:39.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.537][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.538][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-29 19:21:39.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-29 19:21:39.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.555][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-29 19:21:39.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-29 19:21:39.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.561][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-29 19:21:39.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-29 19:21:39.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.566][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-29 19:21:39.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-29 19:21:39.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.572][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-29 19:21:39.573][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-29 19:21:39.574][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.575][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.577][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-29 19:21:39.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-29 19:21:39.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.593][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-29 19:21:39.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-29 19:21:39.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.599][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-29 19:21:39.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-29 19:21:39.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.604][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-29 19:21:39.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-29 19:21:39.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.609][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-05-29 19:21:39.611][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-29 19:21:39.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.613][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.614][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-29 19:21:39.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-29 19:21:39.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.632][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-29 19:21:39.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-29 19:21:39.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.638][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-29 19:21:39.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-29 19:21:39.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.643][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-29 19:21:39.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-29 19:21:39.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.648][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-29 19:21:39.649][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-29 19:21:39.651][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.652][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.653][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-29 19:21:39.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-29 19:21:39.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.673][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-29 19:21:39.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-29 19:21:39.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.680][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-29 19:21:39.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-29 19:21:39.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.686][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-29 19:21:39.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-29 19:21:39.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.691][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-29 19:21:39.692][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-29 19:21:39.693][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.695][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.696][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-29 19:21:39.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-29 19:21:39.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.711][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-29 19:21:39.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-29 19:21:39.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.723][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-29 19:21:39.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-29 19:21:39.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.728][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-29 19:21:39.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-29 19:21:39.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.731][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-29 19:21:39.733][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-29 19:21:39.734][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.735][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.736][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-29 19:21:39.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-29 19:21:39.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.751][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:39.753][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:39.755][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.757][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.765][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-29 19:21:39.767][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-29 19:21:39.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.770][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.778][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-29 19:21:39.780][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-29 19:21:39.782][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.783][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.791][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-29 19:21:39.793][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-29 19:21:39.794][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.796][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.805][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-29 19:21:39.807][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-29 19:21:39.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.810][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.819][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-29 19:21:39.820][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-29 19:21:39.821][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.822][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.829][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-29 19:21:39.830][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-29 19:21:39.831][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.832][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.839][ef$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-29 19:21:39.841][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-29 19:21:39.842][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.843][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.852][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:39.854][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:39.856][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.857][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.866][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-29 19:21:39.868][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-29 19:21:39.869][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.871][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.880][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-29 19:21:39.882][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-29 19:21:39.883][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.885][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.894][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-29 19:21:39.896][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-29 19:21:39.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.899][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.906][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-29 19:21:39.908][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-29 19:21:39.909][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.910][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.918][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-29 19:21:39.920][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-29 19:21:39.921][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.921][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.929][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:39.930][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:39.932][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.933][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.942][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-29 19:21:39.943][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-29 19:21:39.944][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.946][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.953][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:39.955][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:39.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.966][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:39.973][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-05-29 19:21:39.975][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-29 19:21:39.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:39.977][ef$get] fields variable is a list.
biodb.INFO [2024-05-29 19:21:39.991][biodb::testThat]
biodb.INFO [2024-05-29 19:21:39.993][biodb::testThat] Running test function test.rt.unit (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-05-29 19:21:39.995][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-29 19:21:39.996][biodb::testThat]
biodb.DEBUG[2024-05-29 19:21:40.011][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2024-05-29 19:21:40.019][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-05-29 19:21:40.024][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-29 19:21:40.025][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-05-29 19:21:40.031][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2024-05-29 19:21:40.033][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-29 19:21:40.058][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2024-05-29 19:21:40.060][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-05-29 19:21:40.093][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-05-29 19:21:40.095][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-05-29 19:21:40.098][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-29 19:21:40.099][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-29 19:21:40.101][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-29 19:21:40.110][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:40.111][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:40.112][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:40.113][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-29 19:21:40.118][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:40.120][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:40.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.123][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.125][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:40.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:40.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.132][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:40.133][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:40.135][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.136][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.138][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:40.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:40.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.143][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-29 19:21:40.144][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-29 19:21:40.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.147][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.149][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-29 19:21:40.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-29 19:21:40.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.154][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-29 19:21:40.155][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-29 19:21:40.156][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.157][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.158][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-29 19:21:40.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-29 19:21:40.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.164][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-29 19:21:40.165][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-29 19:21:40.166][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.167][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.169][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-29 19:21:40.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-29 19:21:40.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.174][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-29 19:21:40.175][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-29 19:21:40.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.178][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.179][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-29 19:21:40.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-29 19:21:40.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.191][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-29 19:21:40.193][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-29 19:21:40.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.195][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.197][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-29 19:21:40.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-29 19:21:40.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.203][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-29 19:21:40.204][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-29 19:21:40.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.207][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.209][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-29 19:21:40.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-29 19:21:40.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.216][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-29 19:21:40.217][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-29 19:21:40.219][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.220][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.222][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-29 19:21:40.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-29 19:21:40.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.227][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-29 19:21:40.229][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-29 19:21:40.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.231][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.233][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-29 19:21:40.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-29 19:21:40.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.238][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-29 19:21:40.239][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-29 19:21:40.240][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.241][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.242][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-29 19:21:40.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-29 19:21:40.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.247][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-29 19:21:40.249][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-29 19:21:40.250][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.251][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.253][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-29 19:21:40.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-29 19:21:40.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.258][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-29 19:21:40.259][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-29 19:21:40.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.262][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.264][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-29 19:21:40.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-29 19:21:40.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.269][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-29 19:21:40.270][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-29 19:21:40.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.287][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.289][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-29 19:21:40.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-29 19:21:40.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.294][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:40.295][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:40.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.297][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.299][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:40.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:40.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.303][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:40.305][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:40.305][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.307][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.308][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:40.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:40.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.313][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-05-29 19:21:40.314][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-29 19:21:40.315][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.316][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.317][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-29 19:21:40.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-29 19:21:40.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.321][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-05-29 19:21:40.323][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-29 19:21:40.324][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.325][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.326][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-05-29 19:21:40.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-29 19:21:40.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.332][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:40.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:40.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.337][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:40.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:40.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.342][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:40.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:40.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.346][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-29 19:21:40.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-29 19:21:40.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.350][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-29 19:21:40.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-29 19:21:40.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.356][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-29 19:21:40.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-29 19:21:40.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.361][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-29 19:21:40.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-29 19:21:40.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.364][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-29 19:21:40.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-29 19:21:40.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.368][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-29 19:21:40.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-29 19:21:40.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.373][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-29 19:21:40.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-29 19:21:40.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.385][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-29 19:21:40.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-29 19:21:40.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.389][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-29 19:21:40.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-29 19:21:40.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.396][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-29 19:21:40.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-29 19:21:40.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.401][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-29 19:21:40.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-29 19:21:40.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.406][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-29 19:21:40.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-29 19:21:40.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.411][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-29 19:21:40.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-29 19:21:40.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.416][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-29 19:21:40.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-29 19:21:40.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.420][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-29 19:21:40.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-29 19:21:40.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.425][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-29 19:21:40.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-29 19:21:40.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.430][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-29 19:21:40.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-29 19:21:40.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.435][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-29 19:21:40.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-29 19:21:40.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.440][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-29 19:21:40.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-29 19:21:40.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.444][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-29 19:21:40.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-29 19:21:40.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.449][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-29 19:21:40.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-29 19:21:40.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.454][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:40.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:40.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.458][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:40.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:40.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.463][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:40.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:40.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.467][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-29 19:21:40.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-29 19:21:40.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.471][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-29 19:21:40.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-29 19:21:40.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.477][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-29 19:21:40.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-29 19:21:40.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.482][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-29 19:21:40.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-29 19:21:40.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.488][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-29 19:21:40.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-29 19:21:40.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.493][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-29 19:21:40.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-29 19:21:40.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.499][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-29 19:21:40.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-29 19:21:40.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.503][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-29 19:21:40.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-29 19:21:40.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.508][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-29 19:21:40.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-29 19:21:40.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.513][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-29 19:21:40.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-29 19:21:40.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.517][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-29 19:21:40.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-29 19:21:40.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.521][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-29 19:21:40.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-29 19:21:40.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.526][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-29 19:21:40.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-29 19:21:40.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.537][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-29 19:21:40.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-29 19:21:40.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.542][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-29 19:21:40.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-29 19:21:40.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.547][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:40.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:40.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.552][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:40.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:40.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.563][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:40.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:40.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.569][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-29 19:21:40.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-29 19:21:40.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.573][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-29 19:21:40.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-29 19:21:40.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.579][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-29 19:21:40.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-29 19:21:40.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.585][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:40.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:40.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.589][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:40.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:40.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.593][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:40.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:40.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.598][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-29 19:21:40.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-29 19:21:40.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.603][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-29 19:21:40.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-29 19:21:40.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.607][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-29 19:21:40.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-29 19:21:40.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.611][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-05-29 19:21:40.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-29 19:21:40.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.617][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-29 19:21:40.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-29 19:21:40.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.622][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-29 19:21:40.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-29 19:21:40.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.626][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-29 19:21:40.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-29 19:21:40.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.631][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-05-29 19:21:40.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-29 19:21:40.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.636][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:40.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:40.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.641][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:40.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:40.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.646][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:40.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:40.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.652][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:40.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:40.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.656][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:40.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:40.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.661][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-29 19:21:40.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-29 19:21:40.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.666][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-29 19:21:40.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-29 19:21:40.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.672][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:40.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:40.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.677][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-29 19:21:40.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-29 19:21:40.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.683][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:40.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:40.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.687][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:40.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:40.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:40.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:40.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:40.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:40.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:40.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:40.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:40.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:40.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-29 19:21:40.708][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2024-05-29 19:21:40.709][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-05-29 19:21:40.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-05-29 19:21:40.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.713][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-05-29 19:21:40.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-05-29 19:21:40.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.717][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-05-29 19:21:40.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-05-29 19:21:40.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-05-29 19:21:40.743][biodb::testThat]
biodb.INFO [2024-05-29 19:21:40.744][biodb::testThat] Running test function test.searchForEntries (" We can search for an entry by searchable field ").
biodb.INFO [2024-05-29 19:21:40.746][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-29 19:21:40.747][biodb::testThat]
biodb.TRACE[2024-05-29 19:21:40.751][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:40.753][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:40.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.755][ef$get] fields variable is a list.
biodb.DEBUG[2024-05-29 19:21:40.756][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "name".
biodb.TRACE[2024-05-29 19:21:40.796][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:40.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:40.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.803][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:40.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:40.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.808][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:40.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:40.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-29 19:21:40.816][function(conn, opt)] With value "1-Methylhistidine".
biodb.DEBUG[2024-05-29 19:21:40.818][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2024-05-29 19:21:40.819][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-05-29 19:21:40.820][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-05-29 19:21:40.823][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-29 19:21:40.824][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-29 19:21:40.826][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-05-29 19:21:40.828][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-29 19:21:40.830][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-05-29 19:21:40.831][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-05-29 19:21:40.833][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-05-29 19:21:40.834][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-05-29 19:21:40.836][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-05-29 19:21:40.837][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-05-29 19:21:40.838][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-05-29 19:21:40.840][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:40.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:40.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.845][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:40.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:40.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.850][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:40.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:40.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.855][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:40.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:40.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-29 19:21:40.860][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-05-29 19:21:40.862][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-05-29 19:21:40.863][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2024-05-29 19:21:40.884][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:40.886][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:40.888][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.889][ef$get] fields variable is a list.
biodb.DEBUG[2024-05-29 19:21:40.891][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "description".
biodb.TRACE[2024-05-29 19:21:40.913][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:40.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:40.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.920][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:40.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:40.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:40.924][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:40.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:40.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:40.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-29 19:21:40.934][function(conn, opt)] With value "1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.".
biodb.DEBUG[2024-05-29 19:21:41.017][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-05-29 19:21:41.019][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2024-05-29 19:21:41.020][private$doSearchForEntries] fields VALUES = 1-Methylhistidine, also known as 1-MHis, belongs to the class of organic compounds known as histidine and derivatives. Histidine and derivatives are compounds containing cysteine or a derivative thereof resulting from a reaction of cysteine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom. 1-Methylhistidine is derived mainly from the anserine of dietary flesh sources, especially poultry. The enzyme, carnosinase, splits anserine into beta-alanine and 1-MHis. High levels of 1-MHis tend to inhibit the enzyme carnosinase and increase anserine levels. Conversely, genetic variants with deficient carnosinase activity in plasma show increased 1-MHis excretions when they consume a high meat diet. Reduced serum carnosinase activity is also found in patients with Parkinson's disease and multiple sclerosis and patients following a cerebrovascular accident. Vitamin E deficiency can lead to 1-methylhistidinuria from increased oxidative effects in skeletal muscle. 1-Methylhistidine is a biomarker for the consumption of meat, especially red meat.
biodb.DEBUG[2024-05-29 19:21:41.038][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-29 19:21:41.039][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-29 19:21:41.042][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-05-29 19:21:41.044][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-29 19:21:41.045][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-05-29 19:21:41.068][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-05-29 19:21:41.070][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-05-29 19:21:41.072][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-05-29 19:21:41.074][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-05-29 19:21:41.076][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-05-29 19:21:41.077][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-05-29 19:21:41.080][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:41.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:41.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:41.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:41.085][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:41.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:41.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:41.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:41.091][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:41.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:41.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:41.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:41.096][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:41.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:41.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:41.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-29 19:21:41.101][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-05-29 19:21:41.108][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-05-29 19:21:41.110][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.TRACE[2024-05-29 19:21:41.131][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:41.132][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:41.134][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:41.135][ef$get] fields variable is a list.
biodb.DEBUG[2024-05-29 19:21:41.137][function(conn, opt)] Testing searchForEntries() with entry "HMDB0000001" and field "secondary.accessions".
biodb.TRACE[2024-05-29 19:21:41.158][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:41.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:41.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:41.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:41.164][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:41.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:41.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:41.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:41.169][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:41.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:41.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:41.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-29 19:21:41.178][function(conn, opt)] With value "HMDB00001".
biodb.DEBUG[2024-05-29 19:21:41.180][private$doSearchForEntries] fields NAMES = secondary.accessions
biodb.DEBUG[2024-05-29 19:21:41.182][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2024-05-29 19:21:41.183][private$doSearchForEntries] fields VALUES = HMDB00001
biodb.DEBUG[2024-05-29 19:21:41.186][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-29 19:21:41.188][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-29 19:21:41.190][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-05-29 19:21:41.192][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-29 19:21:41.193][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-05-29 19:21:41.194][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-05-29 19:21:41.196][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-05-29 19:21:41.197][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-05-29 19:21:41.198][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-05-29 19:21:41.200][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-05-29 19:21:41.201][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-05-29 19:21:41.203][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:41.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:41.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:41.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:41.208][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:41.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:41.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:41.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:41.212][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:41.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:41.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:41.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:41.216][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:41.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:41.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:41.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-29 19:21:41.219][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-05-29 19:21:41.221][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-05-29 19:21:41.222][function(conn, opt)] With found IDs [1]: "HMDB0000001".
biodb.INFO [2024-05-29 19:21:41.248][biodb::testThat]
biodb.INFO [2024-05-29 19:21:41.249][biodb::testThat] Running test function test.searchByName (" We can search for an entry by name. ").
biodb.INFO [2024-05-29 19:21:41.252][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-29 19:21:41.253][biodb::testThat]
biodb.TRACE[2024-05-29 19:21:41.271][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:41.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:41.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:41.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:41.277][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:41.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:41.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:41.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:41.283][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:41.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:41.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:41.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-29 19:21:41.302][private$doSearchForEntries] fields NAMES = name
biodb.DEBUG[2024-05-29 19:21:41.303][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-05-29 19:21:41.304][private$doSearchForEntries] fields VALUES = 1-Methylhistidine
biodb.DEBUG[2024-05-29 19:21:41.306][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-29 19:21:41.308][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-29 19:21:41.310][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-05-29 19:21:41.312][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-29 19:21:41.313][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-05-29 19:21:41.315][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-05-29 19:21:41.316][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-05-29 19:21:41.318][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-05-29 19:21:41.319][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-05-29 19:21:41.328][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-05-29 19:21:41.329][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-05-29 19:21:41.331][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:41.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:41.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:41.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:41.335][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:41.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:41.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:41.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:41.359][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:41.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:41.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:41.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:41.365][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:41.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:41.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:41.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-29 19:21:41.370][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-05-29 19:21:41.371][private$doSearchForEntries] COUNT IDS = 1
biodb.INFO [2024-05-29 19:21:41.402][biodb::testThat]
biodb.INFO [2024-05-29 19:21:41.404][biodb::testThat] Running test function testEntryLoading (" We can load an entry from the database. ").
biodb.INFO [2024-05-29 19:21:41.405][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-29 19:21:41.407][biodb::testThat]
biodb.TRACE[2024-05-29 19:21:41.437][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-29 19:21:41.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-29 19:21:41.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:41.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:41.443][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-29 19:21:41.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-29 19:21:41.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:41.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:41.447][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-29 19:21:41.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-29 19:21:41.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:41.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:41.453][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-29 19:21:41.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-29 19:21:41.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:41.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:41.517][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-29 19:21:41.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-29 19:21:41.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:41.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:41.524][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-29 19:21:41.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-29 19:21:41.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:41.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:41.536][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-29 19:21:41.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-29 19:21:41.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:41.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:41.542][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-29 19:21:41.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-29 19:21:41.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:41.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-05-29 19:21:41.565][biodb::testThat]
biodb.INFO [2024-05-29 19:21:41.566][biodb::testThat] Running test function test.entry.page.url (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-05-29 19:21:41.568][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-29 19:21:41.569][biodb::testThat]
biodb.INFO [2024-05-29 19:21:41.580][biodb::testThat]
biodb.INFO [2024-05-29 19:21:41.581][biodb::testThat] Running test function test.entry.image.url (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-05-29 19:21:41.582][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-29 19:21:41.583][biodb::testThat]
biodb.INFO [2024-05-29 19:21:41.596][biodb::testThat]
biodb.INFO [2024-05-29 19:21:41.598][biodb::testThat] Running test function test.entry.page.url.download (" The entry page URL can be downloaded. ").
biodb.INFO [2024-05-29 19:21:41.599][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-29 19:21:41.600][biodb::testThat]
biodb.DEBUG[2024-05-29 19:21:41.606][function(conn, opt)] Trying to download "http://www.hmdb.ca/metabolites/HMDB0000001".
biodb.DEBUG[2024-05-29 19:21:42.735][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/metabolites/HMDB0000001.
biodb.INFO [2024-05-29 19:21:42.779][biodb::testThat]
biodb.INFO [2024-05-29 19:21:42.780][biodb::testThat] Running test function test.entry.image.url.download (" The entry image URL can be downloaded. ").
biodb.INFO [2024-05-29 19:21:42.781][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-29 19:21:42.782][biodb::testThat]
biodb.DEBUG[2024-05-29 19:21:42.952][getUrlContent] Use RCurl for downloading content of URL http://www.hmdb.ca/structures/HMDB0000001/image.png.
biodb.TRACE[2024-05-29 19:21:42.974][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:42.976][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:42.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:42.979][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:42.981][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:42.982][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:42.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:42.984][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:42.985][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:42.986][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:42.988][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:42.989][ef$get] fields variable is a list.
biodb.INFO [2024-05-29 19:21:42.990][biodb::testThat]
biodb.INFO [2024-05-29 19:21:42.991][biodb::testThat] Running test function test.wrong.entry (" Wrong entry gives NULL ").
biodb.INFO [2024-05-29 19:21:42.992][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-29 19:21:42.993][biodb::testThat]
biodb.DEBUG[2024-05-29 19:21:42.996][private$loadEntries] Creating entries from ids [1]: "WRONGA".
biodb.DEBUG[2024-05-29 19:21:43.076][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-05-29 19:21:43.079][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-29 19:21:43.080][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-05-29 19:21:43.105][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGA".
biodb.TRACE[2024-05-29 19:21:43.107][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-05-29 19:21:43.108][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-29 19:21:43.109][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-05-29 19:21:43.112][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-29 19:21:43.114][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-05-29 19:21:43.115][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-05-29 19:21:43.118][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-29 19:21:43.119][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-29 19:21:43.120][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-29 19:21:43.127][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:43.129][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:43.130][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:43.132][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-29 19:21:43.134][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-29 19:21:43.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-29 19:21:43.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:43.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:43.138][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-29 19:21:43.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-29 19:21:43.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:43.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:43.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:43.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:43.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:43.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:43.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:43.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:43.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:43.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:43.154][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:43.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:43.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:43.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:43.160][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:43.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:43.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:43.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:43.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:43.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:43.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:43.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:43.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:43.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:43.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:43.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-29 19:21:43.176][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2024-05-29 19:21:43.177][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.INFO [2024-05-29 19:21:43.201][biodb::testThat]
biodb.INFO [2024-05-29 19:21:43.202][biodb::testThat] Running test function test.wrong.entry.among.good.ones (" One wrong entry does not block the retrieval of good ones ").
biodb.INFO [2024-05-29 19:21:43.204][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-29 19:21:43.205][biodb::testThat]
biodb.DEBUG[2024-05-29 19:21:43.248][function(conn, opt)] IDS: [2]: "WRONGB, HMDB0000001"
biodb.DEBUG[2024-05-29 19:21:43.250][private$loadEntries] Creating entries from ids [1]: "WRONGB".
biodb.DEBUG[2024-05-29 19:21:43.251][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-05-29 19:21:43.254][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-29 19:21:43.256][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-05-29 19:21:43.258][cch$loadFileContent] Trying to load 1 files from cache: [1]: "WRONGB".
biodb.TRACE[2024-05-29 19:21:43.260][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-05-29 19:21:43.262][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-29 19:21:43.263][conn$getEntryContent] 0 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-05-29 19:21:43.265][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-29 19:21:43.267][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-05-29 19:21:43.268][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-05-29 19:21:43.270][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-29 19:21:43.271][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-29 19:21:43.271][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-29 19:21:43.279][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:43.280][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:43.282][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:43.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-29 19:21:43.286][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-29 19:21:43.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-29 19:21:43.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:43.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:43.291][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-29 19:21:43.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-29 19:21:43.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:43.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:43.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:43.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:43.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:43.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:43.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:43.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:43.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:43.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:43.305][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:43.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:43.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:43.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:43.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:43.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:43.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:43.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:43.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:43.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:43.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:43.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:43.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:43.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:43.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:43.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-29 19:21:43.325][self$createEntryFromContent] Accession numbers: NA.
biodb.DEBUG[2024-05-29 19:21:43.327][self$createEntryFromContent] Found 1 entry/ies without an accession number. Set it/them to NULL.
biodb.DEBUG[2024-05-29 19:21:43.328][function(conn, opt)] Entries: [2]: "NULL, <environment>"
biodb.INFO [2024-05-29 19:21:43.347][biodb::testThat]
biodb.INFO [2024-05-29 19:21:43.349][biodb::testThat] Running test function test.peak.table (" The peak table is correct. ").
biodb.INFO [2024-05-29 19:21:43.351][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-29 19:21:43.352][biodb::testThat]
biodb.INFO [2024-05-29 19:21:43.383][biodb::testThat]
biodb.INFO [2024-05-29 19:21:43.384][biodb::testThat] Running test function test.nb.entries (" Nb entries is positive. ").
biodb.INFO [2024-05-29 19:21:43.386][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-29 19:21:43.387][biodb::testThat]
biodb.DEBUG[2024-05-29 19:21:43.391][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-29 19:21:43.394][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-29 19:21:43.402][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-05-29 19:21:43.404][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-29 19:21:43.406][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-05-29 19:21:43.408][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-05-29 19:21:43.409][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-05-29 19:21:43.411][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-05-29 19:21:43.413][private$doGetEntryIds] COUNT IDS = 2
biodb.INFO [2024-05-29 19:21:43.426][biodb::testThat]
biodb.INFO [2024-05-29 19:21:43.427][biodb::testThat] Running test function test.entry.ids (" We can get a list of entry ids. ").
biodb.INFO [2024-05-29 19:21:43.428][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-29 19:21:43.428][biodb::testThat]
biodb.DEBUG[2024-05-29 19:21:43.432][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-29 19:21:43.434][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-29 19:21:43.436][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-05-29 19:21:43.438][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-29 19:21:43.439][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-05-29 19:21:43.441][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-05-29 19:21:43.442][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-05-29 19:21:43.443][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-05-29 19:21:43.445][private$doGetEntryIds] COUNT IDS = 2
biodb.TRACE[2024-05-29 19:21:43.458][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:43.460][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:43.461][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:43.462][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:43.463][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:43.465][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:43.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:43.467][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:43.468][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:43.469][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:43.470][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:43.471][ef$get] fields variable is a list.
biodb.INFO [2024-05-29 19:21:43.473][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-05-29 19:21:43.474][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-05-29 19:21:43.485][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-05-29 19:21:43.486][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-05-29 19:21:43.488][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-29 19:21:43.489][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-29 19:21:43.491][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:43.492][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:43.493][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:43.494][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-05-29 19:21:43.499][biodb::testContext]
biodb.INFO [2024-05-29 19:21:43.500][biodb::testContext] ********************************************************************************
biodb.INFO [2024-05-29 19:21:43.502][biodb::testContext] Test context - Test retrieval of entries
biodb.INFO [2024-05-29 19:21:43.503][biodb::testContext] ********************************************************************************
biodb.INFO [2024-05-29 19:21:43.504][biodb::testContext]
biodb.INFO [2024-05-29 19:21:43.510][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.12.0.
biodb.DEBUG[2024-05-29 19:21:43.511][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-05-29 19:21:43.518][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-29 19:21:43.519][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-05-29 19:21:43.520][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-05-29 19:21:43.521][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:43.522][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:43.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:43.523][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-05-29 19:21:43.525][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-05-29 19:21:43.526][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:43.528][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:43.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:43.530][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-05-29 19:21:43.532][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-05-29 19:21:43.533][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:43.535][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:43.536][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:43.538][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-05-29 19:21:43.539][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-05-29 19:21:43.540][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-05-29 19:21:43.541][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:43.542][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:43.543][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:43.544][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-05-29 19:21:43.545][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-05-29 19:21:43.547][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-05-29 19:21:43.548][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:43.549][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:43.550][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:43.551][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-05-29 19:21:43.552][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-05-29 19:21:43.553][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:43.554][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:43.556][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:43.564][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-05-29 19:21:43.565][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-05-29 19:21:43.567][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-05-29 19:21:43.568][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:43.570][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:43.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:43.572][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-05-29 19:21:43.573][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-05-29 19:21:43.575][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:43.576][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:43.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:43.578][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-05-29 19:21:43.579][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-05-29 19:21:43.580][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-05-29 19:21:43.582][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:43.583][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:43.584][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:43.585][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-05-29 19:21:43.586][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-05-29 19:21:43.587][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-05-29 19:21:43.588][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-05-29 19:21:43.589][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-05-29 19:21:43.590][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-05-29 19:21:43.591][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:43.593][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:43.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:43.596][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-05-29 19:21:43.598][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-05-29 19:21:43.599][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:43.600][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:43.601][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:43.602][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-05-29 19:21:43.604][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-05-29 19:21:43.605][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:43.606][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:43.607][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:43.608][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-05-29 19:21:43.610][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-05-29 19:21:43.610][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:43.611][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:43.612][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:43.613][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-05-29 19:21:43.615][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-05-29 19:21:43.616][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:43.617][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:43.618][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:43.620][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-05-29 19:21:43.621][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-05-29 19:21:43.622][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:43.623][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:43.624][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:43.625][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-05-29 19:21:43.626][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-05-29 19:21:43.648][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-05-29 19:21:43.655][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:43.656][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:43.657][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:43.657][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-05-29 19:21:43.658][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-05-29 19:21:43.659][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-05-29 19:21:43.660][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:43.661][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:43.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:43.664][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-05-29 19:21:43.666][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-29 19:21:43.669][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-05-29 19:21:43.675][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-29 19:21:43.680][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-29 19:21:43.682][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-29 19:21:43.684][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-29 19:21:43.685][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-29 19:21:43.687][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-29 19:21:43.688][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-05-29 19:21:43.690][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-29 19:21:43.691][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-29 19:21:43.692][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-05-29 19:21:43.694][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-29 19:21:43.695][self$setPropertyValue]
biodb.DEBUG[2024-05-29 19:21:43.697][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-29 19:21:43.698][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-29 19:21:43.698][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-05-29 19:21:43.698][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-05-29 19:21:43.698][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-05-29 19:21:43.698][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-05-29 19:21:43.699][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-29 19:21:43.700][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-29 19:21:43.702][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-29 19:21:43.703][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-29 19:21:43.705][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-29 19:21:43.706][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-29 19:21:43.707][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-29 19:21:43.708][self$setPropertyValue]
biodb.DEBUG[2024-05-29 19:21:43.710][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-29 19:21:43.711][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-29 19:21:43.713][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-29 19:21:43.714][self$setPropertyValue]
biodb.DEBUG[2024-05-29 19:21:43.715][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-05-29 19:21:43.718][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-29 19:21:43.719][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-05-29 19:21:43.720][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-29 19:21:43.721][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-29 19:21:43.723][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-29 19:21:43.724][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-29 19:21:43.725][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-29 19:21:43.726][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-29 19:21:43.727][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-05-29 19:21:43.728][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-29 19:21:43.730][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-29 19:21:43.731][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-05-29 19:21:43.732][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-29 19:21:43.733][self$setPropertyValue]
biodb.DEBUG[2024-05-29 19:21:43.735][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-29 19:21:43.741][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-29 19:21:43.741][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-05-29 19:21:43.741][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-05-29 19:21:43.741][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-05-29 19:21:43.741][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-05-29 19:21:43.742][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-29 19:21:43.744][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-29 19:21:43.745][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-29 19:21:43.746][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-29 19:21:43.747][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-29 19:21:43.748][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-29 19:21:43.749][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-29 19:21:43.750][self$setPropertyValue]
biodb.DEBUG[2024-05-29 19:21:43.751][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-29 19:21:43.752][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-29 19:21:43.753][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-29 19:21:43.754][self$setPropertyValue]
biodb.DEBUG[2024-05-29 19:21:43.756][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-05-29 19:21:43.758][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-29 19:21:43.760][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-05-29 19:21:43.761][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-29 19:21:43.762][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-29 19:21:43.763][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-29 19:21:43.765][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-29 19:21:43.766][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-29 19:21:43.767][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-29 19:21:43.768][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-05-29 19:21:43.770][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-29 19:21:43.771][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-05-29 19:21:43.773][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-05-29 19:21:43.774][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-29 19:21:43.775][self$setPropertyValue]
biodb.DEBUG[2024-05-29 19:21:43.776][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-29 19:21:43.777][self$setPropertyValue]
biodb.DEBUG[2024-05-29 19:21:43.778][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-29 19:21:43.780][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-29 19:21:43.781][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-29 19:21:43.782][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-29 19:21:43.783][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-29 19:21:43.784][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-29 19:21:43.785][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-29 19:21:43.786][self$setPropertyValue]
biodb.DEBUG[2024-05-29 19:21:43.787][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-29 19:21:43.789][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-29 19:21:43.790][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-29 19:21:43.791][self$setPropertyValue]
biodb.DEBUG[2024-05-29 19:21:43.793][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-05-29 19:21:43.796][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-29 19:21:43.797][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-05-29 19:21:43.798][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-29 19:21:43.799][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-29 19:21:43.800][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-29 19:21:43.801][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-29 19:21:43.802][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-29 19:21:43.803][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-29 19:21:43.805][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-05-29 19:21:43.806][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-29 19:21:43.808][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-05-29 19:21:43.809][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-05-29 19:21:43.810][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-29 19:21:43.811][self$setPropertyValue]
biodb.DEBUG[2024-05-29 19:21:43.812][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-29 19:21:43.814][self$setPropertyValue]
biodb.DEBUG[2024-05-29 19:21:43.815][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-29 19:21:43.816][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-29 19:21:43.817][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-29 19:21:43.818][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-29 19:21:43.819][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-29 19:21:43.820][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-29 19:21:43.821][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-29 19:21:43.822][self$setPropertyValue]
biodb.DEBUG[2024-05-29 19:21:43.823][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-29 19:21:43.823][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-29 19:21:43.824][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-29 19:21:43.825][self$setPropertyValue]
biodb.DEBUG[2024-05-29 19:21:43.827][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-29 19:21:43.827][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:43.828][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:43.829][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:43.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:43.832][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:43.833][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:43.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:43.835][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:43.836][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:43.837][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:43.838][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:43.839][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:43.840][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:43.841][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:43.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:43.843][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:43.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:43.845][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:43.847][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:43.848][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:43.849][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:43.850][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:43.851][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:43.852][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:43.853][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:43.854][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:43.855][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:43.856][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:43.857][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:43.858][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:43.859][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:43.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:43.860][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:43.861][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:43.862][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:43.864][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:43.864][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:43.873][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:43.874][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:43.876][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:43.877][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:43.878][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:43.879][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:43.881][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:43.882][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:43.883][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:43.884][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:43.885][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:43.886][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:43.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:43.889][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:43.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:43.891][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:43.893][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:43.894][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:43.896][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:43.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:43.898][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:43.899][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:43.900][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:43.901][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:43.902][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:43.903][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:43.904][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:43.906][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:43.907][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:43.908][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:43.909][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:43.910][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:43.911][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:43.913][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:43.914][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:43.914][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:43.915][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:43.916][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:43.917][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:43.918][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:43.919][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:43.920][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:43.920][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:43.921][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:43.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:43.923][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:43.924][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:43.926][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:43.927][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:43.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:43.929][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-05-29 19:21:43.931][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-05-29 19:21:43.932][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-05-29 19:21:43.934][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-05-29 19:21:43.935][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-05-29 19:21:43.937][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-05-29 19:21:43.939][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-05-29 19:21:43.941][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-05-29 19:21:43.942][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-05-29 19:21:43.944][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-05-29 19:21:43.946][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-05-29 19:21:43.949][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-05-29 19:21:43.950][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-05-29 19:21:43.951][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-05-29 19:21:43.953][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-05-29 19:21:43.955][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-05-29 19:21:43.957][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-05-29 19:21:43.959][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-05-29 19:21:43.961][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-05-29 19:21:43.963][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-05-29 19:21:43.965][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-05-29 19:21:43.967][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-05-29 19:21:43.968][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-05-29 19:21:43.970][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-05-29 19:21:43.972][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-05-29 19:21:43.973][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-05-29 19:21:43.975][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-05-29 19:21:43.977][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-05-29 19:21:43.979][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-05-29 19:21:43.980][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-05-29 19:21:43.982][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-05-29 19:21:43.984][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-05-29 19:21:43.986][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-05-29 19:21:43.988][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-05-29 19:21:43.991][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-05-29 19:21:43.995][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-05-29 19:21:43.996][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-05-29 19:21:43.999][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-05-29 19:21:44.000][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-05-29 19:21:44.002][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-05-29 19:21:44.003][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-05-29 19:21:44.005][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-05-29 19:21:44.007][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-05-29 19:21:44.016][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-05-29 19:21:44.017][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-05-29 19:21:44.020][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-05-29 19:21:44.021][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-05-29 19:21:44.024][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-05-29 19:21:44.026][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-05-29 19:21:44.028][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-05-29 19:21:44.030][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-05-29 19:21:44.032][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-05-29 19:21:44.034][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-05-29 19:21:44.037][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-05-29 19:21:44.038][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-05-29 19:21:44.040][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-05-29 19:21:44.042][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-05-29 19:21:44.043][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-05-29 19:21:44.045][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-05-29 19:21:44.046][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-05-29 19:21:44.048][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-05-29 19:21:44.049][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-05-29 19:21:44.051][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-05-29 19:21:44.052][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-05-29 19:21:44.054][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-05-29 19:21:44.056][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-05-29 19:21:44.058][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-05-29 19:21:44.060][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-05-29 19:21:44.062][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-05-29 19:21:44.064][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-05-29 19:21:44.066][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-05-29 19:21:44.068][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-05-29 19:21:44.069][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-05-29 19:21:44.071][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-05-29 19:21:44.073][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-05-29 19:21:44.075][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-05-29 19:21:44.077][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-05-29 19:21:44.078][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-05-29 19:21:44.081][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-05-29 19:21:44.083][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-05-29 19:21:44.086][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-05-29 19:21:44.088][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-05-29 19:21:44.090][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-05-29 19:21:44.092][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-05-29 19:21:44.094][initialize] This is biodb version 1.12.0.
biodb.DEBUG[2024-05-29 19:21:44.095][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-29 19:21:44.097][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:44.098][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:44.099][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:44.100][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:44.102][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:44.103][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-29 19:21:44.104][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-29 19:21:44.105][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:44.105][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:44.106][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:44.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:44.108][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:44.108][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-29 19:21:44.110][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-29 19:21:44.111][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:44.112][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:44.113][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:44.114][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:44.115][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:44.116][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-29 19:21:44.116][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-29 19:21:44.117][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:44.119][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:44.120][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:44.121][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:44.122][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:44.123][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-29 19:21:44.124][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-29 19:21:44.126][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:44.127][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:44.128][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:44.129][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:44.130][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:44.131][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-29 19:21:44.132][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-29 19:21:44.132][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:44.133][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:44.134][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:44.135][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:44.136][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:44.137][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-29 19:21:44.138][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-29 19:21:44.139][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:44.140][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:44.141][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:44.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:44.144][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:44.145][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-29 19:21:44.152][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-29 19:21:44.153][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:44.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:44.155][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:44.156][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:44.157][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:44.158][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-29 19:21:44.160][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-29 19:21:44.161][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:44.161][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:44.163][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:44.164][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:44.165][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:44.167][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-29 19:21:44.168][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-29 19:21:44.169][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:44.170][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:44.171][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:44.173][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:44.174][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:44.175][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-29 19:21:44.176][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-29 19:21:44.177][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:44.178][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:44.180][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:44.181][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:44.182][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:44.183][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-29 19:21:44.185][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-29 19:21:44.186][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:44.186][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:44.187][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:44.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:44.189][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:44.190][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-29 19:21:44.191][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-29 19:21:44.191][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:44.193][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:44.194][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:44.195][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:44.197][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:44.198][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-29 19:21:44.199][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-29 19:21:44.199][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:44.200][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:44.201][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:44.202][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:44.203][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:44.204][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-29 19:21:44.205][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-29 19:21:44.207][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:44.208][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:44.208][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:44.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:44.210][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:44.211][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-29 19:21:44.212][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-29 19:21:44.213][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:44.213][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:44.214][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:44.215][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:44.216][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:44.217][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-29 19:21:44.218][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-29 19:21:44.220][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:44.221][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:44.222][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:44.223][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:44.224][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:44.226][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-29 19:21:44.227][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-29 19:21:44.229][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:44.230][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:44.231][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:44.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:44.235][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-05-29 19:21:44.237][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-05-29 19:21:44.239][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-29 19:21:44.240][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-05-29 19:21:44.241][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-29 19:21:44.242][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-29 19:21:44.243][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-05-29 19:21:44.245][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-05-29 19:21:44.246][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-05-29 19:21:44.247][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-29 19:21:44.248][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-05-29 19:21:44.249][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-29 19:21:44.251][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-29 19:21:44.253][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-05-29 19:21:44.254][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-29 19:21:44.255][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-05-29 19:21:44.255][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-05-29 19:21:44.255][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-05-29 19:21:44.255][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-05-29 19:21:44.255][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-05-29 19:21:44.255][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-05-29 19:21:44.255][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-05-29 19:21:44.255][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-05-29 19:21:44.255][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-05-29 19:21:44.255][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-05-29 19:21:44.255][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-05-29 19:21:44.255][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-05-29 19:21:44.255][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-05-29 19:21:44.255][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-05-29 19:21:44.255][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-05-29 19:21:44.255][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-05-29 19:21:44.255][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-05-29 19:21:44.255][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-05-29 19:21:44.257][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-05-29 19:21:44.258][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-29 19:21:44.258][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-05-29 19:21:44.258][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-05-29 19:21:44.259][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-05-29 19:21:44.260][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-29 19:21:44.261][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-29 19:21:44.262][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-29 19:21:44.263][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-29 19:21:44.264][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-29 19:21:44.266][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-29 19:21:44.267][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-05-29 19:21:44.267][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-05-29 19:21:44.269][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-29 19:21:44.270][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-29 19:21:44.271][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-05-29 19:21:44.272][self$setPropertyValue]
biodb.DEBUG[2024-05-29 19:21:44.274][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-05-29 19:21:44.276][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-05-29 19:21:44.278][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-05-29 19:21:44.279][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-05-29 19:21:44.287][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-05-29 19:21:44.290][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-05-29 19:21:44.291][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-05-29 19:21:44.293][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-05-29 19:21:44.296][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-05-29 19:21:44.297][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-29 19:21:44.299][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-29 19:21:44.301][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-05-29 19:21:44.302][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-05-29 19:21:44.304][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-05-29 19:21:44.304][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-05-29 19:21:44.306][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-29 19:21:44.307][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-29 19:21:44.308][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-05-29 19:21:44.309][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-05-29 19:21:44.310][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-05-29 19:21:44.312][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-05-29 19:21:44.314][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-29 19:21:44.316][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-29 19:21:44.317][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-05-29 19:21:44.318][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-29 19:21:44.319][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-05-29 19:21:44.321][biodb::testThat]
biodb.INFO [2024-05-29 19:21:44.322][biodb::testThat] Running test function test.hmdbmetabolite.nbentries (" HMDB metabolite returns enough entries. ").
biodb.INFO [2024-05-29 19:21:44.323][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-29 19:21:44.324][biodb::testThat]
biodb.DEBUG[2024-05-29 19:21:44.328][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-29 19:21:44.331][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-29 19:21:44.332][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-05-29 19:21:44.333][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-29 19:21:44.335][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-05-29 19:21:44.336][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-05-29 19:21:44.338][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-05-29 19:21:44.339][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-05-29 19:21:44.340][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-05-29 19:21:44.344][conn$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.INFO [2024-05-29 19:21:44.352][biodb::testThat]
biodb.INFO [2024-05-29 19:21:44.353][biodb::testThat] Running test function test.old.accession (" We can retrieve entries using old accession numbers. ").
biodb.INFO [2024-05-29 19:21:44.354][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-29 19:21:44.355][biodb::testThat]
biodb.DEBUG[2024-05-29 19:21:44.357][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2024-05-29 19:21:44.358][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-05-29 19:21:44.360][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-29 19:21:44.362][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-05-29 19:21:44.365][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2024-05-29 19:21:44.366][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-29 19:21:44.368][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2024-05-29 19:21:44.370][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-05-29 19:21:44.371][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-05-29 19:21:44.372][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-05-29 19:21:44.373][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-29 19:21:44.375][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-29 19:21:44.376][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-29 19:21:44.383][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:44.384][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:44.385][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:44.386][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-29 19:21:44.388][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:44.390][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:44.391][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.393][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:44.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:44.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.399][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:44.401][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:44.402][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.403][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.404][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:44.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:44.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.410][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-29 19:21:44.411][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-29 19:21:44.412][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.414][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.416][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-29 19:21:44.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-29 19:21:44.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.421][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-29 19:21:44.422][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-29 19:21:44.424][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.425][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.427][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-29 19:21:44.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-29 19:21:44.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.440][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-29 19:21:44.441][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-29 19:21:44.442][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.444][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.445][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-29 19:21:44.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-29 19:21:44.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.451][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-29 19:21:44.453][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-29 19:21:44.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.455][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.456][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-29 19:21:44.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-29 19:21:44.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.461][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-29 19:21:44.462][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-29 19:21:44.463][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.464][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.465][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-29 19:21:44.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-29 19:21:44.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.471][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-29 19:21:44.472][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-29 19:21:44.473][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.474][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.476][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-29 19:21:44.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-29 19:21:44.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.481][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-29 19:21:44.481][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-29 19:21:44.482][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.483][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.484][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-29 19:21:44.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-29 19:21:44.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.490][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-29 19:21:44.492][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-29 19:21:44.493][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.495][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.496][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-29 19:21:44.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-29 19:21:44.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.502][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-29 19:21:44.503][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-29 19:21:44.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.506][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.507][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-29 19:21:44.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-29 19:21:44.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.512][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-29 19:21:44.513][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-29 19:21:44.513][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.514][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.515][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-29 19:21:44.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-29 19:21:44.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.521][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-29 19:21:44.523][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-29 19:21:44.524][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.525][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.527][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-29 19:21:44.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-29 19:21:44.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.532][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-29 19:21:44.533][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-29 19:21:44.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.536][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.537][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-29 19:21:44.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-29 19:21:44.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.542][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:44.543][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:44.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.546][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.547][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:44.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:44.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.552][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:44.553][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:44.554][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.555][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.556][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:44.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:44.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.561][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-05-29 19:21:44.562][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-29 19:21:44.563][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.564][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.574][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-29 19:21:44.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-29 19:21:44.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.579][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-05-29 19:21:44.581][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-29 19:21:44.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.583][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.585][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-05-29 19:21:44.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-29 19:21:44.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.590][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:44.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:44.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.594][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:44.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:44.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.599][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:44.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:44.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.604][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-29 19:21:44.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-29 19:21:44.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.610][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-29 19:21:44.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-29 19:21:44.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.616][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-29 19:21:44.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-29 19:21:44.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.620][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-29 19:21:44.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-29 19:21:44.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.627][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-29 19:21:44.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-29 19:21:44.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.632][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-29 19:21:44.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-29 19:21:44.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.665][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-29 19:21:44.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-29 19:21:44.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.671][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-29 19:21:44.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-29 19:21:44.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.679][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-29 19:21:44.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-29 19:21:44.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.686][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-29 19:21:44.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-29 19:21:44.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.692][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-29 19:21:44.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-29 19:21:44.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.695][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-29 19:21:44.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-29 19:21:44.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.700][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-29 19:21:44.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-29 19:21:44.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.705][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-29 19:21:44.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-29 19:21:44.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.711][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-29 19:21:44.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-29 19:21:44.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.717][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-29 19:21:44.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-29 19:21:44.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.722][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-29 19:21:44.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-29 19:21:44.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.726][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-29 19:21:44.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-29 19:21:44.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.731][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-29 19:21:44.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-29 19:21:44.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.736][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-29 19:21:44.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-29 19:21:44.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.748][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-29 19:21:44.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-29 19:21:44.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.756][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:44.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:44.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.761][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:44.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:44.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.766][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:44.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:44.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.771][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-29 19:21:44.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-29 19:21:44.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.777][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-29 19:21:44.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-29 19:21:44.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.780][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-29 19:21:44.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-29 19:21:44.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.785][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-29 19:21:44.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-29 19:21:44.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.790][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-29 19:21:44.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-29 19:21:44.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.796][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-29 19:21:44.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-29 19:21:44.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.800][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-29 19:21:44.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-29 19:21:44.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.805][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-29 19:21:44.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-29 19:21:44.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.809][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-29 19:21:44.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-29 19:21:44.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.815][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-29 19:21:44.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-29 19:21:44.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.819][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-29 19:21:44.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-29 19:21:44.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.823][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-29 19:21:44.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-29 19:21:44.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.827][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-29 19:21:44.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-29 19:21:44.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.831][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-29 19:21:44.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-29 19:21:44.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.836][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-29 19:21:44.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-29 19:21:44.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.841][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:44.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:44.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.847][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:44.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:44.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.852][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:44.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:44.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.856][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-29 19:21:44.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-29 19:21:44.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.862][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-29 19:21:44.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-29 19:21:44.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.866][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-29 19:21:44.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-29 19:21:44.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.872][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:44.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:44.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.877][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:44.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:44.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.888][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:44.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:44.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.893][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-29 19:21:44.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-29 19:21:44.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.899][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-29 19:21:44.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-29 19:21:44.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.903][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-29 19:21:44.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-29 19:21:44.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.908][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-05-29 19:21:44.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-29 19:21:44.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.912][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-29 19:21:44.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-29 19:21:44.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.916][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-29 19:21:44.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-29 19:21:44.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.919][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-29 19:21:44.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-29 19:21:44.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.924][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-05-29 19:21:44.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-29 19:21:44.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.930][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:44.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:44.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.936][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:44.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:44.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.939][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:44.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:44.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.943][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:44.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:44.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.948][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:44.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:44.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.953][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-29 19:21:44.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-29 19:21:44.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.959][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-29 19:21:44.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-29 19:21:44.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:44.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:44.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.968][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-29 19:21:44.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-29 19:21:44.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.972][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:44.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:44.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.977][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:44.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:44.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.981][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:44.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:44.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.987][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:44.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:44.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:44.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:44.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:44.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:44.997][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:44.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:44.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:45.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-29 19:21:45.002][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2024-05-29 19:21:45.005][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:45.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:45.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:45.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:45.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:45.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:45.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:45.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:45.020][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:45.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:45.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:45.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-05-29 19:21:45.032][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-05-29 19:21:45.034][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-05-29 19:21:45.036][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-05-29 19:21:45.037][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-05-29 19:21:45.039][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-29 19:21:45.040][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-29 19:21:45.041][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:45.042][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:45.043][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:45.044][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-05-29 19:21:45.049][biodb::testContext]
biodb.INFO [2024-05-29 19:21:45.050][biodb::testContext] ********************************************************************************
biodb.INFO [2024-05-29 19:21:45.051][biodb::testContext] Test context - Test search of entries
biodb.INFO [2024-05-29 19:21:45.052][biodb::testContext] ********************************************************************************
biodb.INFO [2024-05-29 19:21:45.054][biodb::testContext]
biodb.INFO [2024-05-29 19:21:45.060][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.12.0.
biodb.DEBUG[2024-05-29 19:21:45.062][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-05-29 19:21:45.066][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-29 19:21:45.068][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-05-29 19:21:45.069][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-05-29 19:21:45.070][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:45.071][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:45.072][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:45.073][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-05-29 19:21:45.075][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-05-29 19:21:45.076][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:45.077][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:45.078][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:45.079][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-05-29 19:21:45.079][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-05-29 19:21:45.080][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:45.081][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:45.082][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:45.083][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-05-29 19:21:45.084][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-05-29 19:21:45.085][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-05-29 19:21:45.086][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:45.087][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:45.088][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:45.090][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-05-29 19:21:45.091][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-05-29 19:21:45.092][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-05-29 19:21:45.093][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:45.094][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:45.095][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:45.096][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-05-29 19:21:45.097][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-05-29 19:21:45.097][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:45.098][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:45.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:45.100][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-05-29 19:21:45.101][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-05-29 19:21:45.103][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-05-29 19:21:45.104][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:45.105][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:45.106][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:45.106][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-05-29 19:21:45.107][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-05-29 19:21:45.108][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:45.109][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:45.110][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:45.112][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-05-29 19:21:45.113][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-05-29 19:21:45.114][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-05-29 19:21:45.115][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:45.116][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:45.116][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:45.117][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-05-29 19:21:45.118][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-05-29 19:21:45.119][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-05-29 19:21:45.121][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-05-29 19:21:45.122][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-05-29 19:21:45.123][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-05-29 19:21:45.125][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:45.126][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:45.127][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:45.128][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-05-29 19:21:45.129][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-05-29 19:21:45.130][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:45.132][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:45.133][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:45.134][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-05-29 19:21:45.136][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-05-29 19:21:45.137][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:45.137][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:45.138][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:45.140][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-05-29 19:21:45.141][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-05-29 19:21:45.141][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:45.142][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:45.148][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:45.150][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-05-29 19:21:45.152][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-05-29 19:21:45.153][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:45.154][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:45.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:45.157][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-05-29 19:21:45.158][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-05-29 19:21:45.159][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:45.160][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:45.161][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:45.162][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-05-29 19:21:45.164][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-05-29 19:21:45.185][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-05-29 19:21:45.186][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:45.188][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:45.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:45.190][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-05-29 19:21:45.192][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-05-29 19:21:45.193][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-05-29 19:21:45.194][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:45.196][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:45.197][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:45.199][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-05-29 19:21:45.201][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-29 19:21:45.202][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-05-29 19:21:45.203][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-29 19:21:45.204][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-29 19:21:45.205][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-29 19:21:45.206][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-29 19:21:45.207][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-29 19:21:45.208][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-29 19:21:45.209][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-05-29 19:21:45.210][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-29 19:21:45.212][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-29 19:21:45.213][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-05-29 19:21:45.214][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-29 19:21:45.215][self$setPropertyValue]
biodb.DEBUG[2024-05-29 19:21:45.216][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-29 19:21:45.218][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-29 19:21:45.218][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-05-29 19:21:45.218][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-05-29 19:21:45.218][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-05-29 19:21:45.218][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-05-29 19:21:45.219][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-29 19:21:45.220][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-29 19:21:45.221][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-29 19:21:45.222][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-29 19:21:45.224][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-29 19:21:45.225][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-29 19:21:45.226][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-29 19:21:45.228][self$setPropertyValue]
biodb.DEBUG[2024-05-29 19:21:45.230][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-29 19:21:45.231][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-29 19:21:45.232][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-29 19:21:45.234][self$setPropertyValue]
biodb.DEBUG[2024-05-29 19:21:45.235][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-05-29 19:21:45.238][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-29 19:21:45.239][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-05-29 19:21:45.241][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-29 19:21:45.242][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-29 19:21:45.243][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-29 19:21:45.245][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-29 19:21:45.246][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-29 19:21:45.247][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-29 19:21:45.248][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-05-29 19:21:45.249][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-29 19:21:45.250][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-29 19:21:45.251][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-05-29 19:21:45.252][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-29 19:21:45.253][self$setPropertyValue]
biodb.DEBUG[2024-05-29 19:21:45.254][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-29 19:21:45.255][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-29 19:21:45.255][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-05-29 19:21:45.255][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-05-29 19:21:45.255][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-05-29 19:21:45.255][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-05-29 19:21:45.257][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-29 19:21:45.258][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-29 19:21:45.259][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-29 19:21:45.260][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-29 19:21:45.261][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-29 19:21:45.262][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-29 19:21:45.263][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-29 19:21:45.264][self$setPropertyValue]
biodb.DEBUG[2024-05-29 19:21:45.266][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-29 19:21:45.266][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-29 19:21:45.268][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-29 19:21:45.269][self$setPropertyValue]
biodb.DEBUG[2024-05-29 19:21:45.271][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-05-29 19:21:45.273][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-29 19:21:45.274][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-05-29 19:21:45.275][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-29 19:21:45.276][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-29 19:21:45.277][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-29 19:21:45.278][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-29 19:21:45.280][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-29 19:21:45.281][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-29 19:21:45.282][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-05-29 19:21:45.284][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-29 19:21:45.285][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-05-29 19:21:45.286][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-05-29 19:21:45.287][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-29 19:21:45.288][self$setPropertyValue]
biodb.DEBUG[2024-05-29 19:21:45.290][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-29 19:21:45.291][self$setPropertyValue]
biodb.DEBUG[2024-05-29 19:21:45.293][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-29 19:21:45.294][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-29 19:21:45.295][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-29 19:21:45.296][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-29 19:21:45.305][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-29 19:21:45.306][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-29 19:21:45.308][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-29 19:21:45.309][self$setPropertyValue]
biodb.DEBUG[2024-05-29 19:21:45.310][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-29 19:21:45.311][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-29 19:21:45.312][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-29 19:21:45.314][self$setPropertyValue]
biodb.DEBUG[2024-05-29 19:21:45.315][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-05-29 19:21:45.317][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-29 19:21:45.318][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-05-29 19:21:45.319][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-29 19:21:45.319][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-29 19:21:45.321][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-29 19:21:45.322][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-29 19:21:45.324][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-29 19:21:45.325][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-29 19:21:45.326][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-05-29 19:21:45.328][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-29 19:21:45.329][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-05-29 19:21:45.330][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-05-29 19:21:45.331][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-29 19:21:45.332][self$setPropertyValue]
biodb.DEBUG[2024-05-29 19:21:45.333][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-29 19:21:45.334][self$setPropertyValue]
biodb.DEBUG[2024-05-29 19:21:45.336][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-29 19:21:45.337][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-29 19:21:45.338][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-29 19:21:45.339][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-29 19:21:45.341][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-29 19:21:45.342][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-29 19:21:45.344][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-29 19:21:45.345][self$setPropertyValue]
biodb.DEBUG[2024-05-29 19:21:45.347][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-29 19:21:45.348][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-29 19:21:45.349][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-29 19:21:45.350][self$setPropertyValue]
biodb.DEBUG[2024-05-29 19:21:45.352][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-29 19:21:45.352][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:45.353][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:45.354][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:45.355][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:45.356][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:45.357][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:45.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:45.359][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:45.360][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:45.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:45.363][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:45.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:45.365][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:45.366][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:45.368][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:45.369][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:45.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:45.371][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:45.371][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:45.372][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:45.373][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:45.374][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:45.375][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:45.376][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:45.377][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:45.378][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:45.379][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:45.380][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:45.381][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:45.383][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:45.384][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:45.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:45.387][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:45.388][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:45.390][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:45.391][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:45.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:45.393][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:45.394][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:45.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:45.397][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:45.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:45.399][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:45.400][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:45.401][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:45.402][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:45.403][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:45.404][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:45.406][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:45.407][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:45.408][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:45.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:45.410][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:45.411][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:45.413][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:45.414][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:45.415][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:45.416][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:45.418][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:45.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:45.420][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:45.421][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:45.423][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:45.424][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:45.424][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:45.425][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:45.426][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:45.428][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:45.428][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:45.430][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:45.431][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:45.437][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:45.439][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:45.441][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:45.442][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:45.443][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:45.445][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:45.446][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:45.447][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:45.448][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:45.449][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:45.450][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:45.451][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:45.452][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:45.453][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:45.454][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:45.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:45.456][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-05-29 19:21:45.457][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-05-29 19:21:45.459][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-05-29 19:21:45.461][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-05-29 19:21:45.463][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-05-29 19:21:45.465][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-05-29 19:21:45.467][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-05-29 19:21:45.469][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-05-29 19:21:45.471][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-05-29 19:21:45.473][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-05-29 19:21:45.475][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-05-29 19:21:45.477][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-05-29 19:21:45.479][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-05-29 19:21:45.481][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-05-29 19:21:45.483][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-05-29 19:21:45.484][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-05-29 19:21:45.485][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-05-29 19:21:45.487][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-05-29 19:21:45.489][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-05-29 19:21:45.491][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-05-29 19:21:45.493][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-05-29 19:21:45.495][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-05-29 19:21:45.497][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-05-29 19:21:45.498][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-05-29 19:21:45.500][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-05-29 19:21:45.502][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-05-29 19:21:45.504][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-05-29 19:21:45.506][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-05-29 19:21:45.508][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-05-29 19:21:45.510][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-05-29 19:21:45.511][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-05-29 19:21:45.513][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-05-29 19:21:45.515][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-05-29 19:21:45.517][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-05-29 19:21:45.518][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-05-29 19:21:45.520][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-05-29 19:21:45.521][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-05-29 19:21:45.523][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-05-29 19:21:45.524][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-05-29 19:21:45.526][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-05-29 19:21:45.528][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-05-29 19:21:45.530][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-05-29 19:21:45.532][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-05-29 19:21:45.533][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-05-29 19:21:45.535][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-05-29 19:21:45.537][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-05-29 19:21:45.539][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-05-29 19:21:45.540][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-05-29 19:21:45.542][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-05-29 19:21:45.543][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-05-29 19:21:45.545][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-05-29 19:21:45.546][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-05-29 19:21:45.548][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-05-29 19:21:45.549][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-05-29 19:21:45.552][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-05-29 19:21:45.553][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-05-29 19:21:45.555][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-05-29 19:21:45.558][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-05-29 19:21:45.559][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-05-29 19:21:45.560][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-05-29 19:21:45.561][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-05-29 19:21:45.569][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-05-29 19:21:45.572][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-05-29 19:21:45.573][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-05-29 19:21:45.575][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-05-29 19:21:45.576][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-05-29 19:21:45.577][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-05-29 19:21:45.579][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-05-29 19:21:45.581][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-05-29 19:21:45.583][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-05-29 19:21:45.585][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-05-29 19:21:45.587][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-05-29 19:21:45.588][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-05-29 19:21:45.589][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-05-29 19:21:45.591][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-05-29 19:21:45.593][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-05-29 19:21:45.594][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-05-29 19:21:45.596][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-05-29 19:21:45.597][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-05-29 19:21:45.599][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-05-29 19:21:45.600][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-05-29 19:21:45.601][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-05-29 19:21:45.603][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-05-29 19:21:45.604][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-05-29 19:21:45.606][initialize] This is biodb version 1.12.0.
biodb.DEBUG[2024-05-29 19:21:45.607][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-29 19:21:45.608][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:45.609][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:45.610][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:45.610][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:45.611][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:45.612][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-29 19:21:45.613][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-29 19:21:45.614][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:45.614][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:45.615][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:45.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:45.617][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:45.618][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-29 19:21:45.619][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-29 19:21:45.619][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:45.620][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:45.621][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:45.622][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:45.623][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:45.624][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-29 19:21:45.625][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-29 19:21:45.626][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:45.627][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:45.629][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:45.630][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:45.631][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:45.633][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-29 19:21:45.634][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-29 19:21:45.635][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:45.636][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:45.637][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:45.639][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:45.639][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:45.640][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-29 19:21:45.641][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-29 19:21:45.642][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:45.643][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:45.644][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:45.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:45.646][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:45.647][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-29 19:21:45.648][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-29 19:21:45.649][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:45.650][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:45.652][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:45.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:45.654][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:45.655][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-29 19:21:45.657][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-29 19:21:45.658][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:45.660][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:45.661][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:45.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:45.662][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:45.663][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-29 19:21:45.664][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-29 19:21:45.666][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:45.667][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:45.668][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:45.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:45.670][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:45.672][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-29 19:21:45.673][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-29 19:21:45.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:45.675][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:45.676][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:45.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:45.679][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:45.680][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-29 19:21:45.681][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-29 19:21:45.682][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:45.683][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:45.684][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:45.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:45.694][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:45.696][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-29 19:21:45.698][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-29 19:21:45.700][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:45.701][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:45.701][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:45.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:45.703][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:45.704][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-29 19:21:45.705][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-29 19:21:45.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:45.707][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:45.708][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:45.709][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:45.710][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:45.711][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-29 19:21:45.712][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-29 19:21:45.712][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:45.713][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:45.714][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:45.715][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:45.716][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:45.716][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-29 19:21:45.718][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-29 19:21:45.719][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:45.720][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:45.721][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:45.722][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:45.722][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:45.723][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-29 19:21:45.724][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-29 19:21:45.726][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:45.727][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:45.728][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:45.729][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:45.730][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:45.732][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-29 19:21:45.733][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-29 19:21:45.734][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:45.735][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:45.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:45.737][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:45.738][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-29 19:21:45.739][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-29 19:21:45.740][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-29 19:21:45.741][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:45.742][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:45.742][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:45.743][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:45.745][biodb$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodbHmdb/definitions.yml".
biodb.DEBUG[2024-05-29 19:21:45.747][self$getDbsInfo()$define] Define connector hmdb.metabolites.
biodb.DEBUG[2024-05-29 19:21:45.750][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-29 19:21:45.751][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-05-29 19:21:45.752][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-29 19:21:45.753][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-29 19:21:45.754][self$setPropertyValue] Setting property "downloadable" to "TRUE".
biodb.DEBUG[2024-05-29 19:21:45.755][self$setPropertyValue] Setting property "dwnld.ext" to "zip".
biodb.DEBUG[2024-05-29 19:21:45.756][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-05-29 19:21:45.757][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-29 19:21:45.758][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-05-29 19:21:45.759][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-29 19:21:45.760][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-29 19:21:45.761][self$setPropertyValue] Setting property "name" to "HMDB Metabolites".
biodb.DEBUG[2024-05-29 19:21:45.762][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-29 19:21:45.763][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/accession".
biodb.DEBUG[2024-05-29 19:21:45.763][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/secondary_accessions/accession".
biodb.DEBUG[2024-05-29 19:21:45.763][self$setPropertyValue] Setting property "parsing.expr" to "//average_molecular_weight".
biodb.DEBUG[2024-05-29 19:21:45.763][self$setPropertyValue] Setting property "parsing.expr" to "//cas_registry_number".
biodb.DEBUG[2024-05-29 19:21:45.763][self$setPropertyValue] Setting property "parsing.expr" to "//chebi_id".
biodb.DEBUG[2024-05-29 19:21:45.763][self$setPropertyValue] Setting property "parsing.expr" to "//chemspider_id".
biodb.DEBUG[2024-05-29 19:21:45.763][self$setPropertyValue] Setting property "parsing.expr" to "//kegg_id".
biodb.DEBUG[2024-05-29 19:21:45.763][self$setPropertyValue] Setting property "parsing.expr" to "//pubchem_compound_id".
biodb.DEBUG[2024-05-29 19:21:45.763][self$setPropertyValue] Setting property "parsing.expr" to "//iupac_name".
biodb.DEBUG[2024-05-29 19:21:45.763][self$setPropertyValue] Setting property "parsing.expr" to "//traditional_iupac".
biodb.DEBUG[2024-05-29 19:21:45.763][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/chemical_formula".
biodb.DEBUG[2024-05-29 19:21:45.763][self$setPropertyValue] Setting property "parsing.expr" to "//inchi".
biodb.DEBUG[2024-05-29 19:21:45.763][self$setPropertyValue] Setting property "parsing.expr" to "//inchikey".
biodb.DEBUG[2024-05-29 19:21:45.763][self$setPropertyValue] Setting property "parsing.expr" to "//monisotopic_molecular_weight".
biodb.DEBUG[2024-05-29 19:21:45.763][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/name".
biodb.DEBUG[2024-05-29 19:21:45.763][self$setPropertyValue] Setting property "parsing.expr" to "/metabolite/description".
biodb.DEBUG[2024-05-29 19:21:45.763][self$setPropertyValue] Setting property "parsing.expr" to "//smiles".
biodb.DEBUG[2024-05-29 19:21:45.763][self$setPropertyValue] Setting property "parsing.expr" to "//super_class".
biodb.DEBUG[2024-05-29 19:21:45.764][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-05-29 19:21:45.765][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-29 19:21:45.765][self$setPropertyValue] Setting property "searchable.fields" to "description".
biodb.DEBUG[2024-05-29 19:21:45.765][self$setPropertyValue] Setting property "searchable.fields" to "secondary.accessions".
biodb.DEBUG[2024-05-29 19:21:45.766][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-05-29 19:21:45.768][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-29 19:21:45.769][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-29 19:21:45.770][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-29 19:21:45.771][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-29 19:21:45.772][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-29 19:21:45.772][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-29 19:21:45.773][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-05-29 19:21:45.773][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/system/downloads/current/hmdb_metabolites.zip".
biodb.DEBUG[2024-05-29 19:21:45.775][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-29 19:21:45.776][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-29 19:21:45.777][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-05-29 19:21:45.778][self$setPropertyValue]
biodb.DEBUG[2024-05-29 19:21:45.780][self$getEntryFields()$define] Define field secondary_accessions.
biodb.DEBUG[2024-05-29 19:21:45.783][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-05-29 19:21:45.785][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-05-29 19:21:45.786][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-05-29 19:21:45.788][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-05-29 19:21:45.792][initialize] Initialize connector hmdb.metabolites.
biodb.DEBUG[2024-05-29 19:21:45.793][initialize] Register connector hmdb.metabolites with the request scheduler
biodb.DEBUG[2024-05-29 19:21:45.795][private$bdb$getRequestScheduler()$re ...] Register connector hmdb.metabolites.
biodb.DEBUG[2024-05-29 19:21:45.797][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-05-29 19:21:45.799][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-29 19:21:45.800][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-29 19:21:45.802][rule$addConnector] Connector "hmdb.metabolites" is already listed in rule "www.hmdb.ca".
biodb.DEBUG[2024-05-29 19:21:45.803][biodb$getFactory()$createConn] Creating new connector hmdb.metabolites for database class hmdb.metabolites .
biodb.DEBUG[2024-05-29 19:21:45.805][self$setPropertyValue] Setting property "urls" to "http://www.hmdb.ca/".
biodb.DEBUG[2024-05-29 19:21:45.805][self$setPropertyValue] Setting property "urls" to "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip".
biodb.DEBUG[2024-05-29 19:21:45.806][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-29 19:21:45.808][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-29 19:21:45.809][FUN] Trying to call function notifyConnUrlsUpdated on observer BiodbRequestScheduler.
biodb.DEBUG[2024-05-29 19:21:45.810][FUN] Functions in observer BiodbRequestScheduler: [15]: ".__enclos_env__, clone, getAllRules, unregisterConnector, registerConnector, getConnectorRules, findRule, getUrl, getUrlString, notifyConnSchedulerFrequencyUpdated, notifyConnUrlsUpdated, downloadFile, sendRequest, sendSoapRequest, initialize".
biodb.DEBUG[2024-05-29 19:21:45.811][self$registerConnector] Register connector hmdb.metabolites.
biodb.DEBUG[2024-05-29 19:21:45.817][private$addConnectorRules] Create new rule for URL "www.hmdb.ca" of connector "hmdb.metabolites".
biodb.DEBUG[2024-05-29 19:21:45.819][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-29 19:21:45.821][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-29 19:21:45.823][private$addConnectorRules] Create new rule for URL "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodbHmdb/extdata/generated/hmdb_extract.zip" of connector "hmdb.metabolites".
biodb.DEBUG[2024-05-29 19:21:45.824][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-29 19:21:45.825][self$setFrequency] t=1.000000, n=3.000000
biodb.INFO [2024-05-29 19:21:45.827][biodb::testThat]
biodb.INFO [2024-05-29 19:21:45.828][biodb::testThat] Running test function test.searchMultipleWordsInDescription (" We can search for multiple words inside description field. ").
biodb.INFO [2024-05-29 19:21:45.829][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-29 19:21:45.830][biodb::testThat]
biodb.DEBUG[2024-05-29 19:21:45.832][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-05-29 19:21:45.833][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2024-05-29 19:21:45.834][private$doSearchForEntries] fields VALUES = and
biodb.DEBUG[2024-05-29 19:21:45.837][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-29 19:21:45.839][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-29 19:21:45.841][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-05-29 19:21:45.843][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-29 19:21:45.844][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-05-29 19:21:45.846][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-05-29 19:21:45.848][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-05-29 19:21:45.849][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-05-29 19:21:45.850][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-05-29 19:21:45.851][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-05-29 19:21:45.852][private$doSearchForEntries] Total number of IDs = 2
biodb.DEBUG[2024-05-29 19:21:45.854][private$loadEntries] Creating entries from ids [1]: "HMDB0000001".
biodb.DEBUG[2024-05-29 19:21:45.855][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-05-29 19:21:45.857][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-29 19:21:45.859][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-05-29 19:21:45.862][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000001".
biodb.TRACE[2024-05-29 19:21:45.864][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-29 19:21:45.866][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000001.xml".
biodb.DEBUG[2024-05-29 19:21:45.868][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-05-29 19:21:45.869][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-05-29 19:21:45.871][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-05-29 19:21:45.873][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-29 19:21:45.873][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-29 19:21:45.874][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-29 19:21:45.882][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:45.883][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:45.885][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:45.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-29 19:21:45.891][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:45.892][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:45.894][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:45.895][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:45.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:45.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:45.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:45.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:45.904][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:45.905][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:45.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:45.907][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:45.908][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:45.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:45.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:45.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:45.914][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-29 19:21:45.916][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-29 19:21:45.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:45.918][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:45.919][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-29 19:21:45.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-29 19:21:45.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:45.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:45.924][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-29 19:21:45.925][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-29 19:21:45.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:45.927][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:45.929][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-29 19:21:45.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-29 19:21:45.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:45.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:45.933][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-29 19:21:45.934][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-29 19:21:45.935][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:45.936][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:45.938][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-29 19:21:45.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-29 19:21:45.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:45.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:45.942][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-29 19:21:45.943][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-29 19:21:45.944][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:45.945][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:45.946][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-29 19:21:45.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-29 19:21:45.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:45.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:45.959][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-29 19:21:45.960][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-29 19:21:45.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:45.962][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:45.964][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-29 19:21:45.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-29 19:21:45.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:45.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:45.968][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-29 19:21:45.970][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-29 19:21:45.972][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:45.973][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:45.974][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-29 19:21:45.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-29 19:21:45.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:45.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:45.979][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-29 19:21:45.981][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-29 19:21:45.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:45.983][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:45.985][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-29 19:21:45.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-29 19:21:45.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:45.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:45.990][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-29 19:21:45.991][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-29 19:21:45.993][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:45.994][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:45.996][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-29 19:21:45.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-29 19:21:45.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.001][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-29 19:21:46.002][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-29 19:21:46.004][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.005][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.007][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-29 19:21:46.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-29 19:21:46.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.013][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-29 19:21:46.014][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-29 19:21:46.015][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.016][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.018][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-29 19:21:46.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-29 19:21:46.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.022][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-29 19:21:46.023][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-29 19:21:46.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.025][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.026][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-29 19:21:46.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-29 19:21:46.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.031][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-29 19:21:46.032][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-29 19:21:46.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.033][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.034][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-29 19:21:46.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-29 19:21:46.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.038][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:46.039][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:46.040][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.041][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.042][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:46.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:46.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.047][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:46.048][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:46.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.051][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.053][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:46.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:46.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.057][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-05-29 19:21:46.058][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-29 19:21:46.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.061][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.062][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-29 19:21:46.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-29 19:21:46.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.066][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-05-29 19:21:46.067][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-29 19:21:46.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.069][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.071][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-05-29 19:21:46.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-29 19:21:46.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:46.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:46.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:46.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:46.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.087][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:46.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:46.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.090][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-29 19:21:46.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-29 19:21:46.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.094][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-29 19:21:46.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-29 19:21:46.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.098][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-29 19:21:46.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-29 19:21:46.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.101][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-29 19:21:46.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-29 19:21:46.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.106][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-29 19:21:46.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-29 19:21:46.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.112][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-29 19:21:46.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-29 19:21:46.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.117][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-29 19:21:46.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-29 19:21:46.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.123][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-29 19:21:46.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-29 19:21:46.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.126][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-29 19:21:46.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-29 19:21:46.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.131][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-29 19:21:46.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-29 19:21:46.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.135][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-29 19:21:46.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-29 19:21:46.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.139][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-29 19:21:46.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-29 19:21:46.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.143][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-29 19:21:46.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-29 19:21:46.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.147][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-29 19:21:46.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-29 19:21:46.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.151][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-29 19:21:46.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-29 19:21:46.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.157][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-29 19:21:46.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-29 19:21:46.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.180][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-29 19:21:46.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-29 19:21:46.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.185][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-29 19:21:46.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-29 19:21:46.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.189][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-29 19:21:46.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-29 19:21:46.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.193][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-29 19:21:46.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-29 19:21:46.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.199][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-29 19:21:46.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-29 19:21:46.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.203][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:46.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:46.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.208][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:46.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:46.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.222][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:46.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:46.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.230][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-29 19:21:46.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-29 19:21:46.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.235][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-29 19:21:46.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-29 19:21:46.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.239][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-29 19:21:46.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-29 19:21:46.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.243][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-29 19:21:46.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-29 19:21:46.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.247][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-29 19:21:46.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-29 19:21:46.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.250][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-29 19:21:46.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-29 19:21:46.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.255][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-29 19:21:46.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-29 19:21:46.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.260][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-29 19:21:46.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-29 19:21:46.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.266][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-29 19:21:46.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-29 19:21:46.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.272][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-29 19:21:46.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-29 19:21:46.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.275][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-29 19:21:46.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-29 19:21:46.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.280][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-29 19:21:46.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-29 19:21:46.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.284][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-29 19:21:46.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-29 19:21:46.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.288][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-29 19:21:46.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-29 19:21:46.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.293][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-29 19:21:46.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-29 19:21:46.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.298][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:46.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:46.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.301][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:46.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:46.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.306][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:46.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:46.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.310][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-29 19:21:46.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-29 19:21:46.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.315][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-29 19:21:46.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-29 19:21:46.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.319][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-29 19:21:46.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-29 19:21:46.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.324][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:46.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:46.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.329][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:46.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:46.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.335][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:46.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:46.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.341][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-29 19:21:46.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-29 19:21:46.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.347][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-29 19:21:46.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-29 19:21:46.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.362][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-29 19:21:46.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-29 19:21:46.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.367][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-05-29 19:21:46.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-29 19:21:46.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.372][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-29 19:21:46.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-29 19:21:46.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.376][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-29 19:21:46.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-29 19:21:46.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.379][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-29 19:21:46.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-29 19:21:46.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.383][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-05-29 19:21:46.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-29 19:21:46.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.388][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:46.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:46.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.392][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:46.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:46.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.397][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:46.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:46.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.402][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:46.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:46.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.411][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:46.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:46.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.417][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-29 19:21:46.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-29 19:21:46.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.422][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-29 19:21:46.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-29 19:21:46.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.427][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:46.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:46.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.433][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-29 19:21:46.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-29 19:21:46.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.438][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:46.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:46.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.442][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:46.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:46.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.446][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:46.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:46.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:46.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:46.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.454][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:46.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:46.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:46.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:46.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-29 19:21:46.464][self$createEntryFromContent] Accession numbers: HMDB0000001.
biodb.TRACE[2024-05-29 19:21:46.466][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:46.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:46.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.472][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:46.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:46.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.477][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:46.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:46.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.483][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:46.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:46.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-29 19:21:46.495][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-05-29 19:21:46.497][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-05-29 19:21:46.499][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-29 19:21:46.500][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-29 19:21:46.502][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-29 19:21:46.509][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:46.511][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:46.512][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:46.512][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:46.514][private$loadEntries] Creating entries from ids [1]: "HMDB0000002".
biodb.DEBUG[2024-05-29 19:21:46.515][conn$getEntryContent] Get HMDB Metabolites entry content(s) for 1 id(s)...
biodb.DEBUG[2024-05-29 19:21:46.517][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-29 19:21:46.518][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.TRACE[2024-05-29 19:21:46.520][cch$loadFileContent] Trying to load 1 files from cache: [1]: "HMDB0000002".
biodb.TRACE[2024-05-29 19:21:46.522][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-29 19:21:46.523][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34/HMDB0000002.xml".
biodb.DEBUG[2024-05-29 19:21:46.525][conn$getEntryContent] 1 HMDB Metabolites entry content(s) loaded from cache.
biodb.DEBUG[2024-05-29 19:21:46.526][self$createEntryFromContent] Creating HMDB Metabolites entries from 1 content(s).
biodb.DEBUG[2024-05-29 19:21:46.528][self$createEntryFromContent] Parsing 1 HMDB Metabolites entries.
biodb.DEBUG[2024-05-29 19:21:46.530][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-29 19:21:46.531][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-29 19:21:46.532][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-29 19:21:46.540][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:46.541][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:46.542][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:46.544][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-29 19:21:46.547][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:46.549][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:46.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.552][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:46.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:46.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.558][ef$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:46.559][ef$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:46.561][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.562][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.564][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:46.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:46.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.569][ef$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-29 19:21:46.571][ef$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-29 19:21:46.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.573][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.574][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-29 19:21:46.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-29 19:21:46.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.579][ef$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-29 19:21:46.580][ef$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-29 19:21:46.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.583][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.585][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-29 19:21:46.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-29 19:21:46.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.590][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-29 19:21:46.592][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-29 19:21:46.593][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.593][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.595][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-29 19:21:46.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-29 19:21:46.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.600][ef$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-29 19:21:46.602][ef$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-29 19:21:46.603][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.604][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.605][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-29 19:21:46.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-29 19:21:46.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.611][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-29 19:21:46.612][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-29 19:21:46.614][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.614][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.616][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-29 19:21:46.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-29 19:21:46.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.619][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-29 19:21:46.621][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-29 19:21:46.622][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.623][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.624][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-29 19:21:46.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-29 19:21:46.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.629][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-29 19:21:46.631][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-29 19:21:46.632][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.634][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.641][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-29 19:21:46.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-29 19:21:46.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.648][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-29 19:21:46.649][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-29 19:21:46.650][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.651][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.652][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-29 19:21:46.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-29 19:21:46.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.657][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-29 19:21:46.658][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-29 19:21:46.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.660][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.661][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-29 19:21:46.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-29 19:21:46.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.666][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-29 19:21:46.667][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-29 19:21:46.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.669][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.670][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-29 19:21:46.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-29 19:21:46.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.676][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-29 19:21:46.677][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-29 19:21:46.678][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.680][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.681][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-29 19:21:46.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-29 19:21:46.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.687][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-29 19:21:46.689][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-29 19:21:46.690][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.691][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.692][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-29 19:21:46.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-29 19:21:46.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.695][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:46.697][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:46.698][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.699][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.700][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:46.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:46.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.705][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:46.706][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:46.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.709][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.711][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:46.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:46.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.715][ef$get] Asked field names are: smiles.
biodb.TRACE[2024-05-29 19:21:46.717][ef$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-29 19:21:46.718][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.719][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.720][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-29 19:21:46.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-29 19:21:46.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.724][ef$get] Asked field names are: super.class.
biodb.TRACE[2024-05-29 19:21:46.725][ef$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-29 19:21:46.727][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.728][ef$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.730][self$getBiodb()$getEntryFields()$get] Asked field names are: super.class.
biodb.TRACE[2024-05-29 19:21:46.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-29 19:21:46.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.734][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:46.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:46.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.739][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:46.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:46.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.744][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:46.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:46.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.748][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-29 19:21:46.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-29 19:21:46.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.752][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-29 19:21:46.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-29 19:21:46.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.757][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-29 19:21:46.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-29 19:21:46.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.761][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-29 19:21:46.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-29 19:21:46.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.771][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-29 19:21:46.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-29 19:21:46.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.776][self$getBiodb()$getEntryFields()$get] Asked field names are: cas.id.
biodb.TRACE[2024-05-29 19:21:46.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: cas.id.
biodb.TRACE[2024-05-29 19:21:46.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.781][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-29 19:21:46.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-29 19:21:46.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.785][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-29 19:21:46.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-29 19:21:46.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.789][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-29 19:21:46.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-29 19:21:46.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.793][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-29 19:21:46.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-29 19:21:46.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.796][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-29 19:21:46.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-29 19:21:46.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.800][self$getBiodb()$getEntryFields()$get] Asked field names are: chemspider.id.
biodb.TRACE[2024-05-29 19:21:46.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chemspider.id.
biodb.TRACE[2024-05-29 19:21:46.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.805][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-29 19:21:46.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-29 19:21:46.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.809][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-29 19:21:46.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-29 19:21:46.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.813][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-29 19:21:46.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-29 19:21:46.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.819][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-29 19:21:46.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-29 19:21:46.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.824][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-29 19:21:46.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-29 19:21:46.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.829][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-29 19:21:46.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-29 19:21:46.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.834][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-29 19:21:46.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-29 19:21:46.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.839][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-29 19:21:46.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-29 19:21:46.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.844][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.super.class.
biodb.TRACE[2024-05-29 19:21:46.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.super.class.
biodb.TRACE[2024-05-29 19:21:46.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.849][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:46.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:46.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.854][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:46.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:46.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.858][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:46.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:46.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.864][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-29 19:21:46.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-29 19:21:46.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.868][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-29 19:21:46.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-29 19:21:46.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.873][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-29 19:21:46.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-29 19:21:46.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.877][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-29 19:21:46.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-29 19:21:46.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.882][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-29 19:21:46.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-29 19:21:46.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.888][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-29 19:21:46.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-29 19:21:46.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.900][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-29 19:21:46.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-29 19:21:46.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.907][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-29 19:21:46.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-29 19:21:46.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.914][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-29 19:21:46.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-29 19:21:46.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.919][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-29 19:21:46.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-29 19:21:46.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.923][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-29 19:21:46.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-29 19:21:46.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.928][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-29 19:21:46.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-29 19:21:46.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.932][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-29 19:21:46.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-29 19:21:46.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.937][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-29 19:21:46.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-29 19:21:46.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.943][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-29 19:21:46.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-29 19:21:46.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.947][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:46.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:46.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.951][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:46.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:46.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.956][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:46.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:46.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.960][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-29 19:21:46.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-29 19:21:46.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.966][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-29 19:21:46.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-29 19:21:46.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.971][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-29 19:21:46.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-29 19:21:46.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.975][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:46.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:46.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.980][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:46.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:46.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.985][self$getBiodb()$getEntryFields()$get] Asked field names are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:46.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: secondary.accessions.
biodb.TRACE[2024-05-29 19:21:46.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.990][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-29 19:21:46.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-29 19:21:46.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:46.995][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-29 19:21:46.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-29 19:21:46.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:46.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:47.000][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.
biodb.TRACE[2024-05-29 19:21:47.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.
biodb.TRACE[2024-05-29 19:21:47.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:47.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:47.004][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-05-29 19:21:47.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-29 19:21:47.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:47.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:47.010][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-29 19:21:47.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-29 19:21:47.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:47.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:47.015][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-29 19:21:47.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-29 19:21:47.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:47.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:47.021][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-29 19:21:47.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-29 19:21:47.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:47.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:47.025][self$getBiodb()$getEntryFields()$get] Asked field names are: INCHIKEY.
biodb.TRACE[2024-05-29 19:21:47.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-29 19:21:47.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:47.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:47.035][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:47.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:47.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:47.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:47.041][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:47.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:47.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:47.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:47.045][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:47.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:47.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:47.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:47.050][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:47.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:47.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:47.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:47.056][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-29 19:21:47.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-29 19:21:47.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:47.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:47.060][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-29 19:21:47.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-29 19:21:47.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:47.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:47.066][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-29 19:21:47.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-29 19:21:47.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:47.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:47.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:47.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:47.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:47.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:47.077][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-29 19:21:47.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-29 19:21:47.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:47.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:47.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:47.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:47.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:47.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:47.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:47.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:47.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:47.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:47.092][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:47.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:47.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:47.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:47.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:47.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:47.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:47.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:47.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:47.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:47.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:47.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:47.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-29 19:21:47.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-29 19:21:47.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:47.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-29 19:21:47.110][self$createEntryFromContent] Accession numbers: HMDB0000002.
biodb.TRACE[2024-05-29 19:21:47.111][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:47.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:47.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:47.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:47.116][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:47.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:47.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:47.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:47.121][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:47.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:47.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:47.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:47.126][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:47.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:47.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:47.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-29 19:21:47.131][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-05-29 19:21:47.132][private$doSearchForEntries] COUNT IDS = 2
biodb.DEBUG[2024-05-29 19:21:47.133][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-29 19:21:47.134][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-29 19:21:47.135][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-29 19:21:47.142][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:47.143][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:47.144][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:47.145][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:47.153][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-05-29 19:21:47.154][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2024-05-29 19:21:47.156][private$doSearchForEntries] fields VALUES = c("histidine", "cerebrovascular")
biodb.DEBUG[2024-05-29 19:21:47.159][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-29 19:21:47.161][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-29 19:21:47.164][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-05-29 19:21:47.166][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-29 19:21:47.167][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-05-29 19:21:47.169][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-05-29 19:21:47.170][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-05-29 19:21:47.179][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-05-29 19:21:47.182][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-05-29 19:21:47.183][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-05-29 19:21:47.185][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-05-29 19:21:47.189][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:47.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:47.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:47.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:47.195][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:47.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:47.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:47.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:47.200][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:47.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:47.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:47.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:47.205][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:47.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:47.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:47.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:47.211][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:47.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:47.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:47.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:47.216][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:47.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:47.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:47.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:47.221][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:47.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:47.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:47.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-29 19:21:47.226][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-05-29 19:21:47.227][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-05-29 19:21:47.228][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-29 19:21:47.229][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-29 19:21:47.230][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-29 19:21:47.239][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:47.241][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:47.242][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:47.243][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-29 19:21:47.244][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:47.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:47.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:47.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:47.250][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:47.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:47.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:47.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:47.256][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:47.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:47.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:47.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:47.260][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:47.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:47.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:47.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:47.265][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:47.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:47.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:47.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:47.270][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:47.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:47.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:47.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:47.274][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:47.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:47.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:47.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-29 19:21:47.278][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2024-05-29 19:21:47.279][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-05-29 19:21:47.280][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-29 19:21:47.281][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-29 19:21:47.283][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-29 19:21:47.291][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:47.292][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:47.293][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:47.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-29 19:21:47.300][private$doSearchForEntries] fields NAMES = description
biodb.DEBUG[2024-05-29 19:21:47.302][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2024-05-29 19:21:47.303][private$doSearchForEntries] fields VALUES = c("monoalkylamines", "shiitakes")
biodb.DEBUG[2024-05-29 19:21:47.306][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-29 19:21:47.308][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-29 19:21:47.310][private$doGetEntryIds] .doGetEntryIds 10
biodb.DEBUG[2024-05-29 19:21:47.312][self$isDownloaded] Database hmdb.metabolites has already been downloaded.
biodb.DEBUG[2024-05-29 19:21:47.313][private$doGetEntryIds] .doGetEntryIds 11
biodb.DEBUG[2024-05-29 19:21:47.315][private$doListFiles] List files in /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^.*\.xml$.
biodb.DEBUG[2024-05-29 19:21:47.317][cch$listFiles] Extracting accession number from file names associated with hmdb.metabolites-9e094cf1e5980f9ac69d952373fb6d34 using pattern ^(.*)\.xml$
biodb.DEBUG[2024-05-29 19:21:47.318][cch$listFiles] files = HMDB0000001.xml, HMDB0000002.xml
biodb.DEBUG[2024-05-29 19:21:47.320][private$doGetEntryIds] COUNT IDS = 2
biodb.DEBUG[2024-05-29 19:21:47.321][private$doSearchForEntries] All IDs = [2]: "HMDB0000001, HMDB0000002"
biodb.DEBUG[2024-05-29 19:21:47.323][private$doSearchForEntries] Total number of IDs = 2
biodb.TRACE[2024-05-29 19:21:47.331][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:47.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:47.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:47.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:47.338][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:47.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:47.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:47.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:47.343][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:47.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:47.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:47.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:47.349][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:47.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:47.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:47.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:47.354][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:47.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:47.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:47.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:47.359][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:47.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:47.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:47.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:47.364][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:47.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:47.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:47.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-29 19:21:47.369][private$doSearchForEntries] MATCHED = FALSE
biodb.DEBUG[2024-05-29 19:21:47.370][private$doSearchForEntries] COUNT IDS = 0
biodb.DEBUG[2024-05-29 19:21:47.371][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-29 19:21:47.372][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-29 19:21:47.373][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-29 19:21:47.380][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:47.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:47.383][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:47.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-29 19:21:47.385][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:47.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:47.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:47.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:47.389][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:47.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:47.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:47.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:47.394][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:47.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:47.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:47.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:47.400][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:47.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:47.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:47.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:47.405][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:47.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:47.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:47.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:47.410][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:47.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:47.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:47.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-29 19:21:47.416][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-29 19:21:47.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-29 19:21:47.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-29 19:21:47.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-29 19:21:47.420][private$doSearchForEntries] MATCHED = TRUE
biodb.DEBUG[2024-05-29 19:21:47.421][private$doSearchForEntries] COUNT IDS = 1
biodb.DEBUG[2024-05-29 19:21:47.423][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-29 19:21:47.424][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-29 19:21:47.426][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-29 19:21:47.434][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:47.435][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:47.436][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:47.438][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-05-29 19:21:47.449][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-05-29 19:21:47.451][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector hmdb.metabolites from the request scheduler
biodb.INFO [2024-05-29 19:21:47.452][self$deleteConn] Connector "hmdb.metabolites" deleted.
biodb.DEBUG[2024-05-29 19:21:47.453][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-05-29 19:21:47.454][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-29 19:21:47.455][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-29 19:21:47.456][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-29 19:21:47.458][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-29 19:21:47.459][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-05-29 19:21:47.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 243 ]
>
> proc.time()
user system elapsed
10.964 0.826 13.535